Wall clock time and date at job start Wed Apr 1 2020 02:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48493 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46886 * 300.00148 * 3 2 1 6 6 H 1.48502 * 109.47276 * 59.99812 * 3 2 1 7 7 C 1.38815 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99972 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99665 * 359.72440 * 7 2 1 10 10 C 1.46496 * 119.99710 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.92644 * 329.74246 * 10 9 7 12 12 C 1.53846 * 109.93955 * 208.58333 * 10 9 7 13 13 C 1.52522 * 111.66319 * 297.81387 * 12 10 9 14 14 C 1.53814 * 111.70114 * 305.95545 * 13 12 10 15 15 C 1.51622 * 107.02120 * 57.53833 * 14 13 12 16 16 H 1.09002 * 110.50294 * 55.18871 * 15 14 13 17 17 C 1.53053 * 116.68044 * 182.59703 * 15 14 13 18 18 N 1.48659 * 103.44535 * 155.89133 * 17 15 14 19 19 C 1.34772 * 125.78422 * 155.62394 * 18 17 15 20 20 O 1.21573 * 119.99880 * 179.97438 * 19 18 17 21 21 C 1.47711 * 120.00130 * 359.97035 * 19 18 17 22 22 C 1.41510 * 126.51756 * 180.02562 * 21 19 18 23 23 C 1.35362 * 105.50020 * 180.02562 * 22 21 19 24 24 C 1.50698 * 126.38229 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.49722 * 213.74443 * 24 23 22 26 26 C 1.52998 * 117.49891 * 145.08720 * 24 23 22 27 27 N 1.35035 * 107.22949 * 359.97438 * 23 22 21 28 28 H 0.97003 * 124.88058 * 180.02562 * 27 23 22 29 29 N 1.28463 * 110.23063 * 359.72960 * 27 23 22 30 30 C 1.48240 * 108.42954 * 335.61915 * 18 17 15 31 31 C 1.51438 * 109.94255 * 90.89782 * 10 9 7 32 32 H 1.08998 * 109.87368 * 173.57030 * 31 10 9 33 33 H 0.97000 * 120.00371 * 359.97438 * 1 2 3 34 34 H 0.97000 * 119.99978 * 359.97438 * 9 7 2 35 35 H 1.09001 * 109.04045 * 58.37394 * 12 10 9 36 36 H 1.08996 * 109.04167 * 177.32188 * 12 10 9 37 37 H 1.08997 * 109.03703 * 66.52883 * 13 12 10 38 38 H 1.09007 * 109.03328 * 185.38736 * 13 12 10 39 39 H 1.09004 * 109.94310 * 176.91457 * 14 13 12 40 40 H 1.09000 * 109.94545 * 298.15850 * 14 13 12 41 41 H 1.09008 * 110.62511 * 274.37752 * 17 15 14 42 42 H 1.08998 * 110.63037 * 37.24000 * 17 15 14 43 43 H 1.07998 * 127.24734 * 0.02562 * 22 21 19 44 44 H 1.09005 * 115.55575 * 359.41806 * 24 23 22 45 45 H 1.08999 * 117.49867 * 0.02562 * 25 24 23 46 46 H 1.09007 * 117.49676 * 145.01880 * 25 24 23 47 47 H 1.09005 * 117.49997 * 214.97382 * 26 24 23 48 48 H 1.09003 * 117.50427 * 359.97438 * 26 24 23 49 49 H 1.09001 * 110.17126 * 115.92116 * 30 18 17 50 50 H 1.09002 * 110.16867 * 237.71796 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0068 10 6 2.0580 -3.6567 0.0079 11 1 3.0084 -3.5374 -0.5124 12 6 1.2180 -4.7482 -0.6775 13 6 -0.0876 -5.0051 0.0680 14 6 0.1583 -5.3234 1.5526 15 6 0.9149 -4.1476 2.1392 16 1 0.3705 -3.2191 1.9668 17 6 1.3312 -4.2619 3.6076 18 7 2.4926 -3.3396 3.7103 19 6 2.9223 -2.7358 4.8360 20 8 3.8884 -1.9987 4.7996 21 6 2.2194 -2.9696 6.1140 22 6 2.5496 -2.4102 7.3712 23 6 1.6367 -2.9064 8.2388 24 6 1.5548 -2.6134 9.7148 25 6 1.0691 -3.7374 10.6322 26 6 0.1622 -2.5385 10.3439 27 7 0.8131 -3.7127 7.5352 28 1 0.0632 -4.2017 7.9087 29 7 1.1619 -3.7342 6.2990 30 6 3.0980 -3.1967 2.3647 31 6 2.3024 -4.1108 1.4318 32 1 2.7449 -5.1069 1.4323 33 1 -0.4851 0.8400 0.0004 34 1 0.3555 -2.3880 0.0112 35 1 0.9900 -4.4343 -1.6961 36 1 1.7949 -5.6724 -0.7111 37 1 -0.7193 -4.1200 -0.0058 38 1 -0.6019 -5.8470 -0.3956 39 1 -0.7936 -5.4479 2.0688 40 1 0.7538 -6.2318 1.6445 41 1 0.5230 -3.9359 4.2624 42 1 1.6272 -5.2838 3.8444 43 1 3.3593 -1.7306 7.5919 44 1 2.3196 -1.9412 10.1039 45 1 0.8092 -4.6888 10.1682 46 1 1.5142 -3.8045 11.6250 47 1 0.0109 -1.8173 11.1472 48 1 -0.6949 -2.7006 9.6903 49 1 3.0063 -2.1672 2.0187 50 1 4.1467 -3.4930 2.3911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992820230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:20 Heat of formation + Delta-G solvation = 82.070679 kcal Electronic energy + Delta-G solvation = -31013.647946 eV Core-core repulsion = 27043.390158 eV Total energy + Delta-G solvation = -3970.257788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.79288 -39.97691 -38.24197 -37.50975 -35.28702 -33.57775 -31.97301 -31.29843 -30.92875 -29.91652 -28.78982 -26.77515 -25.10761 -23.87670 -23.42511 -22.89886 -22.36585 -21.18600 -20.73855 -20.57575 -18.63181 -18.58779 -17.95395 -17.10945 -16.51868 -15.93260 -15.80591 -15.41876 -14.85551 -14.68385 -14.42666 -14.33217 -13.88642 -13.73972 -13.61858 -13.46744 -12.85628 -12.64450 -12.50841 -12.25949 -12.17218 -12.11162 -11.78571 -11.47979 -11.47329 -11.34691 -11.08527 -10.99643 -10.81319 -10.70662 -10.69171 -10.30660 -10.21087 -10.01030 -9.80822 -9.70854 -9.43708 -9.38762 -9.27376 -8.90789 -8.82644 -8.10270 -6.91889 -5.72681 -2.99954 1.59897 1.98923 2.69090 3.33551 3.46222 3.49723 3.57336 3.58161 3.71971 4.03758 4.29243 4.42298 4.46065 4.65520 4.72912 4.83883 5.08564 5.10386 5.19222 5.24975 5.35563 5.50249 5.54393 5.54833 5.57485 5.59429 5.68075 5.75976 5.82442 5.83834 5.88031 5.99074 6.05689 6.11147 6.14887 6.17960 6.31958 6.32780 6.42634 6.47144 6.65264 6.67442 6.74563 6.83053 6.88596 6.95167 6.98265 7.17682 7.76542 7.77542 7.96758 8.46063 8.56015 9.58496 10.14941 10.49626 11.49712 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.003320 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.422052 B = 8431.116117 C = 9818.201638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.071 0.929 9 N -0.715 5.715 10 C 0.189 3.811 11 H 0.054 0.946 12 C -0.121 4.121 13 C -0.115 4.115 14 C -0.097 4.097 15 C -0.107 4.107 16 H 0.103 0.897 17 C 0.116 3.884 18 N -0.598 5.598 19 C 0.609 3.391 20 O -0.539 6.539 21 C 0.005 3.995 22 C -0.170 4.170 23 C 0.042 3.958 24 C -0.084 4.084 25 C -0.175 4.175 26 C -0.174 4.174 27 N -0.386 5.386 28 H 0.440 0.560 29 N -0.251 5.251 30 C 0.117 3.883 31 C -0.117 4.117 32 H 0.060 0.940 33 H 0.253 0.747 34 H 0.385 0.615 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.162 0.838 44 H 0.133 0.867 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.099 0.901 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -13.353 17.459 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.357 5.357 10 C 0.078 3.922 11 H 0.072 0.928 12 C -0.159 4.159 13 C -0.152 4.152 14 C -0.135 4.135 15 C -0.127 4.127 16 H 0.122 0.878 17 C -0.006 4.006 18 N -0.330 5.330 19 C 0.395 3.605 20 O -0.415 6.415 21 C -0.156 4.156 22 C -0.198 4.198 23 C -0.084 4.084 24 C -0.104 4.104 25 C -0.212 4.212 26 C -0.211 4.211 27 N -0.099 5.099 28 H 0.284 0.716 29 N -0.086 5.086 30 C -0.004 4.004 31 C -0.139 4.139 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.220 0.780 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.180 0.820 44 H 0.151 0.849 45 H 0.112 0.888 46 H 0.124 0.876 47 H 0.124 0.876 48 H 0.113 0.887 49 H 0.117 0.883 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.198 -13.441 16.853 21.590 hybrid contribution 0.179 1.191 0.755 1.422 sum -1.020 -12.250 17.608 21.474 Atomic orbital electron populations 1.69652 1.05054 1.25427 1.57845 1.24676 0.95431 0.97548 1.02978 0.86211 0.79116 0.84504 0.77025 1.20408 1.22039 1.21950 1.19253 0.90972 0.84051 1.42310 0.91069 1.42437 1.05739 0.99482 1.87993 1.19878 0.94816 0.86606 0.90911 0.92773 1.21802 0.96280 0.98234 0.99586 1.21458 0.98044 1.01162 0.94554 1.21268 0.99427 0.96967 0.95865 1.22150 0.97267 1.00759 0.92480 0.87841 1.22159 0.88293 0.92532 0.97637 1.48875 1.30939 1.45323 1.07901 1.16459 0.83124 0.80022 0.80852 1.90786 1.27638 1.37820 1.85212 1.21981 0.96483 1.01371 0.95740 1.21434 1.02567 1.05289 0.90504 1.20394 0.95251 0.98731 0.93976 1.20510 0.99718 1.03419 0.86726 1.23097 1.03729 0.93399 1.00991 1.23108 0.93179 1.01412 1.03447 1.43273 1.25687 1.35844 1.05130 0.71608 1.73727 1.14851 1.21416 0.98652 1.21869 0.95203 1.03559 0.79800 1.22732 0.94861 0.97808 0.98475 0.92150 0.93701 0.78045 0.91848 0.92842 0.91465 0.92979 0.92380 0.92434 0.89581 0.92256 0.81999 0.84943 0.88834 0.87620 0.87570 0.88735 0.88307 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.90 23.04 29.55 -169.99 -5.02 18.01 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 7 C -0.23 -6.31 8.21 -15.06 -0.12 -6.43 16 8 H 0.07 1.90 7.68 -52.48 -0.40 1.50 16 9 N -0.72 -16.80 3.94 -53.77 -0.21 -17.01 16 10 C 0.19 3.55 3.03 -68.28 -0.21 3.34 16 11 H 0.05 1.05 8.06 -51.93 -0.42 0.63 16 12 C -0.12 -1.88 5.51 -26.54 -0.15 -2.03 16 13 C -0.11 -1.68 5.58 -26.55 -0.15 -1.82 16 14 C -0.10 -1.34 5.71 -27.01 -0.15 -1.49 16 15 C -0.11 -1.79 2.35 -89.80 -0.21 -2.00 16 16 H 0.10 2.15 6.71 -51.93 -0.35 1.80 16 17 C 0.12 1.87 5.83 -2.82 -0.02 1.85 16 18 N -0.60 -11.32 3.38 -171.66 -0.58 -11.90 16 19 C 0.61 12.14 7.87 -12.39 -0.10 12.04 16 20 O -0.54 -12.28 17.27 5.30 0.09 -12.19 16 21 C 0.01 0.09 6.98 -82.76 -0.58 -0.49 16 22 C -0.17 -2.38 10.73 -39.36 -0.42 -2.80 16 23 C 0.04 0.44 6.64 -82.21 -0.55 -0.10 16 24 C -0.08 -0.60 6.26 -91.77 -0.57 -1.18 16 25 C -0.17 -0.90 10.22 -26.70 -0.27 -1.18 16 26 C -0.17 -0.96 10.23 -26.70 -0.27 -1.24 16 27 N -0.39 -4.04 6.80 33.50 0.23 -3.81 16 28 H 0.44 3.00 8.96 -190.44 -1.71 1.30 16 29 N -0.25 -3.56 9.36 33.42 0.31 -3.24 16 30 C 0.12 2.29 6.63 -3.12 -0.02 2.27 16 31 C -0.12 -2.01 2.17 -89.95 -0.20 -2.21 16 32 H 0.06 0.93 7.92 -51.93 -0.41 0.52 16 33 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.38 9.65 6.03 -40.82 -0.25 9.40 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.14 7.04 -51.93 -0.37 0.77 16 38 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.71 7.98 -51.93 -0.41 0.30 16 41 H 0.09 1.39 6.25 -51.92 -0.32 1.07 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 44 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.10 2.33 6.01 -51.93 -0.31 2.02 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -33.14 392.69 -11.78 -44.92 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -9.16 Total: 10.24 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -4.08 Total: -3.85 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.47 Total: -63.05 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.14 -11.78 -44.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992820230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.993 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds