Wall clock time and date at job start Wed Apr 1 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00073 * 2 1 4 4 H 1.48493 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46886 * 300.00148 * 3 2 1 6 6 H 1.48502 * 109.47276 * 59.99812 * 3 2 1 7 7 C 1.38815 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99972 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99665 * 359.72440 * 7 2 1 10 10 C 1.46496 * 119.99710 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.92644 * 329.74246 * 10 9 7 12 12 C 1.53846 * 109.93955 * 208.58333 * 10 9 7 13 13 C 1.52522 * 111.66319 * 297.81387 * 12 10 9 14 14 C 1.53814 * 111.70114 * 305.95545 * 13 12 10 15 15 C 1.51622 * 107.02120 * 57.53833 * 14 13 12 16 16 H 1.09002 * 110.50294 * 55.18871 * 15 14 13 17 17 C 1.53053 * 116.68044 * 182.59703 * 15 14 13 18 18 N 1.48659 * 103.44535 * 155.89133 * 17 15 14 19 19 C 1.34772 * 125.78422 * 155.62394 * 18 17 15 20 20 O 1.21573 * 119.99880 * 179.97438 * 19 18 17 21 21 C 1.47711 * 120.00130 * 359.97035 * 19 18 17 22 22 C 1.41510 * 126.51756 * 180.02562 * 21 19 18 23 23 C 1.35362 * 105.50020 * 180.02562 * 22 21 19 24 24 C 1.50698 * 126.38229 * 179.97438 * 23 22 21 25 25 C 1.52999 * 117.49722 * 213.74443 * 24 23 22 26 26 C 1.52998 * 117.49891 * 145.08720 * 24 23 22 27 27 N 1.35035 * 107.22949 * 359.97438 * 23 22 21 28 28 H 0.97003 * 124.88058 * 180.02562 * 27 23 22 29 29 N 1.28463 * 110.23063 * 359.72960 * 27 23 22 30 30 C 1.48240 * 108.42954 * 335.61915 * 18 17 15 31 31 C 1.51438 * 109.94255 * 90.89782 * 10 9 7 32 32 H 1.08998 * 109.87368 * 173.57030 * 31 10 9 33 33 H 0.97000 * 120.00371 * 359.97438 * 1 2 3 34 34 H 0.97000 * 119.99978 * 359.97438 * 9 7 2 35 35 H 1.09001 * 109.04045 * 58.37394 * 12 10 9 36 36 H 1.08996 * 109.04167 * 177.32188 * 12 10 9 37 37 H 1.08997 * 109.03703 * 66.52883 * 13 12 10 38 38 H 1.09007 * 109.03328 * 185.38736 * 13 12 10 39 39 H 1.09004 * 109.94310 * 176.91457 * 14 13 12 40 40 H 1.09000 * 109.94545 * 298.15850 * 14 13 12 41 41 H 1.09008 * 110.62511 * 274.37752 * 17 15 14 42 42 H 1.08998 * 110.63037 * 37.24000 * 17 15 14 43 43 H 1.07998 * 127.24734 * 0.02562 * 22 21 19 44 44 H 1.09005 * 115.55575 * 359.41806 * 24 23 22 45 45 H 1.08999 * 117.49867 * 0.02562 * 25 24 23 46 46 H 1.09007 * 117.49676 * 145.01880 * 25 24 23 47 47 H 1.09005 * 117.49997 * 214.97382 * 26 24 23 48 48 H 1.09003 * 117.50427 * 359.97438 * 26 24 23 49 49 H 1.09001 * 110.17126 * 115.92116 * 30 18 17 50 50 H 1.09002 * 110.16867 * 237.71796 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0068 10 6 2.0580 -3.6567 0.0079 11 1 3.0084 -3.5374 -0.5124 12 6 1.2180 -4.7482 -0.6775 13 6 -0.0876 -5.0051 0.0680 14 6 0.1583 -5.3234 1.5526 15 6 0.9149 -4.1476 2.1392 16 1 0.3705 -3.2191 1.9668 17 6 1.3312 -4.2619 3.6076 18 7 2.4926 -3.3396 3.7103 19 6 2.9223 -2.7358 4.8360 20 8 3.8884 -1.9987 4.7996 21 6 2.2194 -2.9696 6.1140 22 6 2.5496 -2.4102 7.3712 23 6 1.6367 -2.9064 8.2388 24 6 1.5548 -2.6134 9.7148 25 6 1.0691 -3.7374 10.6322 26 6 0.1622 -2.5385 10.3439 27 7 0.8131 -3.7127 7.5352 28 1 0.0632 -4.2017 7.9087 29 7 1.1619 -3.7342 6.2990 30 6 3.0980 -3.1967 2.3647 31 6 2.3024 -4.1108 1.4318 32 1 2.7449 -5.1069 1.4323 33 1 -0.4851 0.8400 0.0004 34 1 0.3555 -2.3880 0.0112 35 1 0.9900 -4.4343 -1.6961 36 1 1.7949 -5.6724 -0.7111 37 1 -0.7193 -4.1200 -0.0058 38 1 -0.6019 -5.8470 -0.3956 39 1 -0.7936 -5.4479 2.0688 40 1 0.7538 -6.2318 1.6445 41 1 0.5230 -3.9359 4.2624 42 1 1.6272 -5.2838 3.8444 43 1 3.3593 -1.7306 7.5919 44 1 2.3196 -1.9412 10.1039 45 1 0.8092 -4.6888 10.1682 46 1 1.5142 -3.8045 11.6250 47 1 0.0109 -1.8173 11.1472 48 1 -0.6949 -2.7006 9.6903 49 1 3.0063 -2.1672 2.0187 50 1 4.1467 -3.4930 2.3911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992820230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:19 Heat of formation + Delta-G solvation = 61.143308 kcal Electronic energy + Delta-G solvation = -31014.555424 eV Core-core repulsion = 27043.390158 eV Total energy + Delta-G solvation = -3971.165267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.81680 -41.42054 -39.72360 -38.08066 -36.84593 -35.35433 -33.17014 -32.99782 -32.01322 -31.17173 -30.49809 -28.24307 -26.49578 -25.49552 -24.57796 -23.61524 -23.28217 -22.19891 -22.05143 -21.88623 -20.10012 -19.96437 -19.14592 -18.83751 -17.67490 -17.19841 -16.82472 -16.60498 -16.38614 -16.17826 -15.87407 -15.58866 -15.28940 -15.19577 -15.02277 -14.50796 -14.37296 -14.13739 -13.76028 -13.61758 -13.18409 -13.15675 -13.13139 -12.89761 -12.72175 -12.58377 -12.47365 -12.46502 -12.11752 -12.06421 -11.90945 -11.81307 -11.58699 -11.44329 -11.32624 -11.19521 -11.09854 -10.88140 -10.55772 -10.50912 -9.79578 -9.63065 -8.93663 -7.92532 -5.15413 0.43847 0.95644 1.39914 1.43867 1.50517 1.69705 2.06423 2.28938 2.55406 2.99024 3.18198 3.40825 3.42217 3.51206 3.75282 3.81491 3.85613 4.03192 4.04260 4.15182 4.16834 4.31602 4.38820 4.42467 4.52771 4.57587 4.67727 4.69454 4.73876 4.74767 4.75805 4.80740 4.90345 4.98398 4.99233 5.10852 5.12072 5.14027 5.16613 5.18847 5.23006 5.32887 5.40566 5.48523 5.51350 5.58370 5.59576 5.77301 6.02227 6.31504 6.47012 6.73660 7.06906 7.39173 8.18026 8.39836 9.30922 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.003320 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.422052 B = 8431.116117 C = 9818.201638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.073 4.073 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.305 1.305 7 C -0.215 4.215 8 H 0.068 0.932 9 N -0.721 5.721 10 C 0.179 3.821 11 H 0.047 0.953 12 C -0.112 4.112 13 C -0.112 4.112 14 C -0.088 4.088 15 C -0.099 4.099 16 H 0.055 0.945 17 C 0.123 3.877 18 N -0.603 5.603 19 C 0.599 3.401 20 O -0.584 6.584 21 C -0.027 4.027 22 C -0.200 4.200 23 C 0.070 3.930 24 C -0.107 4.107 25 C -0.158 4.158 26 C -0.167 4.167 27 N -0.364 5.364 28 H 0.459 0.541 29 N -0.254 5.254 30 C 0.116 3.884 31 C -0.108 4.108 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.376 0.624 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.159 0.841 44 H 0.141 0.859 45 H 0.100 0.900 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.096 0.904 49 H 0.049 0.951 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.946 -16.776 19.469 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.265 4.265 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.233 1.233 7 C -0.347 4.347 8 H 0.086 0.914 9 N -0.361 5.361 10 C 0.070 3.930 11 H 0.065 0.935 12 C -0.151 4.151 13 C -0.150 4.150 14 C -0.125 4.125 15 C -0.118 4.118 16 H 0.074 0.926 17 C 0.001 3.999 18 N -0.334 5.334 19 C 0.387 3.613 20 O -0.464 6.464 21 C -0.187 4.187 22 C -0.228 4.228 23 C -0.056 4.056 24 C -0.127 4.127 25 C -0.195 4.195 26 C -0.204 4.204 27 N -0.081 5.081 28 H 0.307 0.693 29 N -0.091 5.091 30 C -0.006 4.006 31 C -0.129 4.129 32 H 0.115 0.885 33 H 0.055 0.945 34 H 0.209 0.791 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.177 0.823 44 H 0.159 0.841 45 H 0.119 0.881 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.115 0.885 49 H 0.068 0.932 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.954 -16.934 18.854 25.417 hybrid contribution 0.429 2.182 0.239 2.237 sum -1.525 -14.751 19.093 24.176 Atomic orbital electron populations 1.69769 1.06027 1.25265 1.60574 1.25258 0.96154 1.00089 1.04981 0.85408 0.78469 0.81735 0.76347 1.19698 1.21709 1.23280 1.19491 0.90940 0.85394 1.38885 0.91408 1.42554 1.05430 1.00373 1.87766 1.20190 0.94746 0.85827 0.92287 0.93489 1.21724 0.96708 0.98107 0.98526 1.21445 0.97068 1.00940 0.95519 1.21260 1.00221 0.96325 0.94718 1.22024 0.96597 1.00272 0.92928 0.92644 1.22271 0.87257 0.93188 0.97141 1.49025 1.31541 1.45557 1.07307 1.17036 0.82877 0.79299 0.82136 1.90731 1.29726 1.39764 1.86187 1.21613 0.98084 1.03955 0.95008 1.21572 1.04134 1.06623 0.90447 1.20728 0.93180 0.96432 0.95243 1.20657 1.01666 1.05801 0.84592 1.23226 1.02297 0.93059 1.00938 1.23226 0.91980 1.01917 1.03275 1.43330 1.25634 1.34994 1.04110 0.69320 1.73603 1.14044 1.21160 1.00302 1.21753 0.96288 1.01394 0.81175 1.22595 0.95152 0.98537 0.96644 0.88500 0.94470 0.79084 0.92912 0.89229 0.94736 0.89887 0.90854 0.89330 0.89725 0.89353 0.82290 0.84140 0.88117 0.86015 0.86267 0.88526 0.93213 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.16 13.06 21.65 0.28 -59.88 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.95 49.36 29.55 68.60 2.03 51.38 16 4 H -0.27 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 6 H -0.30 -16.31 7.11 99.48 0.71 -15.60 16 7 C -0.21 -12.00 8.21 84.03 0.69 -11.31 16 8 H 0.07 3.77 7.68 -2.91 -0.02 3.75 16 9 N -0.72 -34.99 3.94 -324.02 -1.28 -36.27 16 10 C 0.18 6.64 3.03 44.77 0.14 6.77 16 11 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 12 C -0.11 -3.24 5.51 30.72 0.17 -3.07 16 13 C -0.11 -2.99 5.58 30.71 0.17 -2.82 16 14 C -0.09 -2.10 5.71 30.42 0.17 -1.92 16 15 C -0.10 -3.19 2.35 -10.26 -0.02 -3.21 16 16 H 0.06 2.36 6.71 -2.39 -0.02 2.35 16 17 C 0.12 3.80 5.83 85.98 0.50 4.30 16 18 N -0.60 -23.36 3.38 -815.29 -2.76 -26.12 16 19 C 0.60 24.96 7.87 86.75 0.68 25.64 16 20 O -0.58 -28.46 17.27 -3.94 -0.07 -28.53 16 21 C -0.03 -0.93 6.98 42.46 0.30 -0.63 16 22 C -0.20 -5.68 10.73 22.41 0.24 -5.44 16 23 C 0.07 1.40 6.64 41.40 0.28 1.67 16 24 C -0.11 -1.28 6.26 -11.54 -0.07 -1.35 16 25 C -0.16 -1.05 10.22 30.62 0.31 -0.74 16 26 C -0.17 -1.29 10.23 30.62 0.31 -0.98 16 27 N -0.36 -6.88 6.80 -47.93 -0.33 -7.20 16 28 H 0.46 4.84 8.96 -219.99 -1.97 2.87 16 29 N -0.25 -6.95 9.36 -48.17 -0.45 -7.41 16 30 C 0.12 4.68 6.63 86.02 0.57 5.25 16 31 C -0.11 -3.60 2.17 -10.36 -0.02 -3.62 16 32 H 0.10 2.62 7.92 -2.39 -0.02 2.60 16 33 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.38 19.66 6.03 -92.71 -0.56 19.10 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.03 1.15 7.04 -2.39 -0.02 1.13 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.09 1.67 7.98 -2.39 -0.02 1.65 16 41 H 0.08 2.67 6.25 -2.38 -0.01 2.65 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.16 4.43 8.06 -2.91 -0.02 4.40 16 44 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 47 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.05 2.49 6.01 -2.39 -0.01 2.48 16 50 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -78.29 392.69 0.75 -77.54 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: -1.56 Total: 31.76 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 4.88 Total: 4.72 kcal Atomic # 7 Polarization: -132.34 SS G_CDS: -4.53 Total: -136.87 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.07 Total: -28.53 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 2.03 Total: 51.38 kcal Total: -78.29 0.75 -77.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992820230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.680 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds