Wall clock time and date at job start Wed Apr 1 2020 02:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48498 * 109.47332 * 270.00398 * 3 2 1 5 5 H 1.48503 * 109.47122 * 29.99949 * 3 2 1 6 6 H 1.48493 * 109.47369 * 149.99895 * 3 2 1 7 7 C 1.38814 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99790 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99954 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.99751 * 33.79884 * 10 9 7 12 12 C 1.52920 * 109.99926 * 273.17917 * 10 9 7 13 13 C 1.52533 * 111.78394 * 183.07181 * 12 10 9 14 14 C 1.53847 * 111.65494 * 53.85862 * 13 12 10 15 15 C 1.51439 * 107.04142 * 302.79834 * 14 13 12 16 16 H 1.08996 * 109.86934 * 305.81731 * 15 14 13 17 17 C 1.52296 * 117.93294 * 179.17711 * 15 14 13 18 18 N 1.48243 * 105.87927 * 214.69165 * 17 15 14 19 19 C 1.34781 * 125.78801 * 183.10170 * 18 17 15 20 20 O 1.21561 * 120.00352 * 179.68526 * 19 18 17 21 21 C 1.47715 * 119.99256 * 359.68365 * 19 18 17 22 22 C 1.41511 * 126.51367 * 180.02562 * 21 19 18 23 23 C 1.35358 * 105.50131 * 180.02562 * 22 21 19 24 24 C 1.50700 * 126.38428 * 180.02562 * 23 22 21 25 25 C 1.53002 * 117.49814 * 213.74351 * 24 23 22 26 26 C 1.53005 * 117.49631 * 145.08237 * 24 23 22 27 27 N 1.35034 * 107.22943 * 359.97438 * 23 22 21 28 28 H 0.97005 * 124.88216 * 179.73710 * 27 23 22 29 29 N 1.28465 * 110.23160 * 359.97438 * 27 23 22 30 30 C 1.48665 * 108.43087 * 2.82966 * 18 17 15 31 31 C 1.51619 * 109.94005 * 155.00259 * 10 9 7 32 32 H 1.09006 * 111.26649 * 63.74124 * 31 10 9 33 33 H 0.96996 * 120.00685 * 359.97438 * 1 2 3 34 34 H 0.97002 * 120.00166 * 0.02562 * 9 7 2 35 35 H 1.08998 * 109.14452 * 62.37453 * 12 10 9 36 36 H 1.08997 * 108.78144 * 303.52670 * 12 10 9 37 37 H 1.08999 * 109.04071 * 293.30110 * 13 12 10 38 38 H 1.08996 * 108.98189 * 174.37443 * 13 12 10 39 39 H 1.08993 * 109.94068 * 183.41483 * 14 13 12 40 40 H 1.08998 * 110.00841 * 62.22048 * 14 13 12 41 41 H 1.08990 * 110.27242 * 95.53052 * 17 15 14 42 42 H 1.09000 * 110.06165 * 333.73266 * 17 15 14 43 43 H 1.08002 * 127.24621 * 0.04184 * 22 21 19 44 44 H 1.08991 * 115.55340 * 359.41984 * 24 23 22 45 45 H 1.08995 * 117.49850 * 359.97438 * 25 24 23 46 46 H 1.09001 * 117.49845 * 145.02699 * 25 24 23 47 47 H 1.09001 * 117.49996 * 214.97595 * 26 24 23 48 48 H 1.08995 * 117.50177 * 359.97438 * 26 24 23 49 49 H 1.09003 * 110.62469 * 143.09692 * 30 18 17 50 50 H 1.08991 * 110.62735 * 265.95688 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9822 -3.5542 0.5674 12 6 2.3877 -4.0692 -1.4369 13 6 3.0857 -5.4243 -1.4904 14 6 2.2790 -6.5079 -0.7543 15 6 2.0858 -6.0275 0.6688 16 1 3.0515 -5.7850 1.1123 17 6 1.2931 -6.9144 1.6198 18 7 0.5515 -5.9914 2.5120 19 6 -0.2327 -6.3551 3.5461 20 8 -0.7894 -5.5062 4.2147 21 6 -0.4157 -7.7854 3.8667 22 6 -1.2032 -8.3194 4.9141 23 6 -1.0678 -9.6629 4.8197 24 6 -1.7131 -10.6914 5.7124 25 6 -0.9241 -11.9698 6.0025 26 6 -2.1394 -12.0143 5.0727 27 7 -0.2476 -9.9099 3.7758 28 1 0.0258 -10.7930 3.4819 29 7 0.1226 -8.8069 3.2311 30 6 0.8248 -4.5964 2.0770 31 6 1.1986 -4.7507 0.6008 32 1 0.3089 -4.9318 -0.0024 33 1 -0.4851 0.8400 0.0004 34 1 0.3557 -2.3881 -0.0005 35 1 3.0369 -3.3169 -1.8849 36 1 1.4608 -4.1240 -2.0078 37 1 4.0686 -5.3366 -1.0273 38 1 3.2086 -5.7189 -2.5325 39 1 2.8301 -7.4482 -0.7575 40 1 1.3105 -6.6434 -1.2356 41 1 1.9680 -7.5401 2.2036 42 1 0.5953 -7.5353 1.0579 43 1 -1.7892 -7.7706 5.6365 44 1 -2.3389 -10.2941 6.5114 45 1 0.0615 -12.0671 5.5473 46 1 -1.0312 -12.4137 6.9922 47 1 -3.0454 -12.4874 5.4512 48 1 -1.9535 -12.1405 4.0062 49 1 -0.0670 -3.9789 2.1847 50 1 1.6542 -4.1730 2.6434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992820231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:23 Heat of formation + Delta-G solvation = 76.315807 kcal Electronic energy + Delta-G solvation = -30180.894000 eV Core-core repulsion = 26210.386662 eV Total energy + Delta-G solvation = -3970.507338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.95634 -40.19250 -38.38284 -37.63247 -35.46654 -33.91780 -32.15319 -31.46411 -31.08308 -30.09012 -28.83117 -26.70446 -25.32032 -24.01877 -23.42489 -23.00643 -22.48293 -21.32746 -20.78168 -20.21741 -19.67439 -18.79007 -18.06812 -17.13163 -16.64637 -16.12566 -15.94224 -15.59597 -15.02147 -14.82393 -14.48521 -14.18297 -14.15570 -13.88750 -13.73831 -13.56349 -12.97989 -12.86800 -12.59570 -12.37098 -12.32417 -12.21974 -12.04944 -11.82738 -11.59084 -11.43080 -11.13573 -10.94816 -10.89963 -10.84028 -10.68436 -10.45697 -10.18061 -10.15154 -10.08571 -9.92922 -9.72180 -9.56701 -9.39517 -9.05574 -8.84063 -8.40453 -6.91174 -5.70961 -2.99948 1.42852 1.81950 2.52659 3.09593 3.34086 3.47343 3.50589 3.52563 3.54453 3.90414 4.17339 4.23862 4.34705 4.52363 4.61262 4.64013 4.88819 4.93137 5.00007 5.10914 5.24528 5.35114 5.38527 5.42324 5.43921 5.48699 5.57524 5.62672 5.65019 5.68003 5.72762 5.83951 5.94716 5.97326 5.98358 6.12414 6.14891 6.19452 6.24941 6.33417 6.42747 6.50330 6.61390 6.67680 6.69241 6.72371 6.91858 7.14604 7.58839 7.71988 7.75074 8.32671 8.46950 9.58372 10.15502 10.50245 11.51448 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002369 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.877028 B =11818.589962 C =13072.870228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.196 3.804 11 H 0.051 0.949 12 C -0.138 4.138 13 C -0.114 4.114 14 C -0.098 4.098 15 C -0.110 4.110 16 H 0.080 0.920 17 C 0.125 3.875 18 N -0.609 5.609 19 C 0.611 3.389 20 O -0.532 6.532 21 C 0.002 3.998 22 C -0.169 4.169 23 C 0.043 3.957 24 C -0.085 4.085 25 C -0.174 4.174 26 C -0.174 4.174 27 N -0.385 5.385 28 H 0.441 0.559 29 N -0.251 5.251 30 C 0.125 3.875 31 C -0.101 4.101 32 H 0.080 0.920 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.163 0.837 44 H 0.133 0.867 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -28.485 7.318 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.086 3.914 11 H 0.069 0.931 12 C -0.178 4.178 13 C -0.152 4.152 14 C -0.136 4.136 15 C -0.130 4.130 16 H 0.099 0.901 17 C 0.002 3.998 18 N -0.343 5.343 19 C 0.397 3.603 20 O -0.407 6.407 21 C -0.160 4.160 22 C -0.197 4.197 23 C -0.082 4.082 24 C -0.105 4.105 25 C -0.212 4.212 26 C -0.211 4.211 27 N -0.099 5.099 28 H 0.285 0.715 29 N -0.087 5.087 30 C 0.004 3.996 31 C -0.121 4.121 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.181 0.819 44 H 0.151 0.849 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.112 0.888 49 H 0.104 0.896 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.543 -28.051 6.881 28.888 hybrid contribution -0.200 0.591 0.364 0.723 sum 0.344 -27.459 7.245 28.401 Atomic orbital electron populations 1.69655 1.05059 1.25612 1.57580 1.24734 0.95473 0.97621 1.03062 0.86229 0.78685 0.84111 0.77390 1.21864 1.21834 1.20808 1.19209 0.90919 0.84090 1.42695 0.91232 1.42407 1.05778 0.99632 1.88409 1.19777 0.93789 0.85129 0.92753 0.93139 1.22163 1.00245 0.94824 1.00614 1.21550 0.98917 0.95392 0.99358 1.21252 1.00608 0.97921 0.93774 1.21909 0.99315 0.96219 0.95517 0.90121 1.21680 0.94839 0.91763 0.91518 1.49039 1.46305 1.09152 1.29772 1.16476 0.78845 0.85199 0.79795 1.90823 1.48726 1.50735 1.50392 1.21948 1.02558 0.93203 0.98247 1.21454 1.04682 0.91655 1.01905 1.20414 0.99118 0.95055 0.93644 1.20526 1.02981 0.86754 1.00242 1.23108 0.96232 0.99963 1.01868 1.23111 0.99667 0.99244 0.99119 1.43254 1.35496 1.08262 1.22845 0.71521 1.73715 1.21377 0.91605 1.21959 1.22008 1.02182 0.81076 0.94331 1.22368 0.98798 0.95953 0.95020 0.90134 0.93532 0.78176 0.91987 0.92782 0.92565 0.92757 0.92217 0.91765 0.91052 0.91278 0.81901 0.84872 0.88809 0.87532 0.87529 0.88773 0.89584 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 22.63 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.24 -6.53 9.95 -15.06 -0.15 -6.68 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.74 5.08 -54.15 -0.27 -18.01 16 10 C 0.20 3.75 2.46 -68.67 -0.17 3.58 16 11 H 0.05 1.00 7.93 -51.93 -0.41 0.58 16 12 C -0.14 -2.35 5.44 -27.01 -0.15 -2.50 16 13 C -0.11 -1.49 5.83 -26.53 -0.15 -1.64 16 14 C -0.10 -1.14 5.73 -27.08 -0.16 -1.29 16 15 C -0.11 -1.45 2.28 -90.37 -0.21 -1.65 16 16 H 0.08 1.07 7.93 -51.93 -0.41 0.65 16 17 C 0.12 1.63 5.27 -3.44 -0.02 1.61 16 18 N -0.61 -9.83 3.38 -172.05 -0.58 -10.41 16 19 C 0.61 10.56 7.87 -12.39 -0.10 10.47 16 20 O -0.53 -10.97 17.22 5.31 0.09 -10.88 16 21 C 0.00 0.02 6.98 -82.76 -0.58 -0.56 16 22 C -0.17 -2.01 10.73 -39.36 -0.42 -2.43 16 23 C 0.04 0.38 6.64 -82.21 -0.55 -0.17 16 24 C -0.09 -0.48 6.26 -91.77 -0.57 -1.05 16 25 C -0.17 -0.68 10.22 -26.69 -0.27 -0.95 16 26 C -0.17 -0.69 10.23 -26.69 -0.27 -0.96 16 27 N -0.38 -3.22 6.80 33.50 0.23 -3.00 16 28 H 0.44 2.15 8.96 -190.44 -1.71 0.44 16 29 N -0.25 -2.94 9.81 33.42 0.33 -2.61 16 30 C 0.12 2.23 6.49 -2.82 -0.02 2.21 16 31 C -0.10 -1.67 2.02 -89.89 -0.18 -1.85 16 32 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 33 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.38 10.20 7.81 -40.82 -0.32 9.88 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 41 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 42 H 0.07 0.87 7.85 -51.93 -0.41 0.47 16 43 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.09 1.76 8.07 -51.93 -0.42 1.34 16 50 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 402.11 15.07 6.06 6.06 Total: -1.00 -33.59 402.11 -12.03 -45.62 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -9.53 Total: 7.61 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -4.06 Total: -4.34 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.42 Total: -61.67 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.59 -12.03 -45.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992820231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.938 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds