Wall clock time and date at job start Wed Apr 1 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99876 * 2 1 4 4 H 1.48498 * 109.47332 * 270.00398 * 3 2 1 5 5 H 1.48503 * 109.47122 * 29.99949 * 3 2 1 6 6 H 1.48493 * 109.47369 * 149.99895 * 3 2 1 7 7 C 1.38814 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99790 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99954 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.99751 * 33.79884 * 10 9 7 12 12 C 1.52920 * 109.99926 * 273.17917 * 10 9 7 13 13 C 1.52533 * 111.78394 * 183.07181 * 12 10 9 14 14 C 1.53847 * 111.65494 * 53.85862 * 13 12 10 15 15 C 1.51439 * 107.04142 * 302.79834 * 14 13 12 16 16 H 1.08996 * 109.86934 * 305.81731 * 15 14 13 17 17 C 1.52296 * 117.93294 * 179.17711 * 15 14 13 18 18 N 1.48243 * 105.87927 * 214.69165 * 17 15 14 19 19 C 1.34781 * 125.78801 * 183.10170 * 18 17 15 20 20 O 1.21561 * 120.00352 * 179.68526 * 19 18 17 21 21 C 1.47715 * 119.99256 * 359.68365 * 19 18 17 22 22 C 1.41511 * 126.51367 * 180.02562 * 21 19 18 23 23 C 1.35358 * 105.50131 * 180.02562 * 22 21 19 24 24 C 1.50700 * 126.38428 * 180.02562 * 23 22 21 25 25 C 1.53002 * 117.49814 * 213.74351 * 24 23 22 26 26 C 1.53005 * 117.49631 * 145.08237 * 24 23 22 27 27 N 1.35034 * 107.22943 * 359.97438 * 23 22 21 28 28 H 0.97005 * 124.88216 * 179.73710 * 27 23 22 29 29 N 1.28465 * 110.23160 * 359.97438 * 27 23 22 30 30 C 1.48665 * 108.43087 * 2.82966 * 18 17 15 31 31 C 1.51619 * 109.94005 * 155.00259 * 10 9 7 32 32 H 1.09006 * 111.26649 * 63.74124 * 31 10 9 33 33 H 0.96996 * 120.00685 * 359.97438 * 1 2 3 34 34 H 0.97002 * 120.00166 * 0.02562 * 9 7 2 35 35 H 1.08998 * 109.14452 * 62.37453 * 12 10 9 36 36 H 1.08997 * 108.78144 * 303.52670 * 12 10 9 37 37 H 1.08999 * 109.04071 * 293.30110 * 13 12 10 38 38 H 1.08996 * 108.98189 * 174.37443 * 13 12 10 39 39 H 1.08993 * 109.94068 * 183.41483 * 14 13 12 40 40 H 1.08998 * 110.00841 * 62.22048 * 14 13 12 41 41 H 1.08990 * 110.27242 * 95.53052 * 17 15 14 42 42 H 1.09000 * 110.06165 * 333.73266 * 17 15 14 43 43 H 1.08002 * 127.24621 * 0.04184 * 22 21 19 44 44 H 1.08991 * 115.55340 * 359.41984 * 24 23 22 45 45 H 1.08995 * 117.49850 * 359.97438 * 25 24 23 46 46 H 1.09001 * 117.49845 * 145.02699 * 25 24 23 47 47 H 1.09001 * 117.49996 * 214.97595 * 26 24 23 48 48 H 1.08995 * 117.50177 * 359.97438 * 26 24 23 49 49 H 1.09003 * 110.62469 * 143.09692 * 30 18 17 50 50 H 1.08991 * 110.62735 * 265.95688 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9822 -3.5542 0.5674 12 6 2.3877 -4.0692 -1.4369 13 6 3.0857 -5.4243 -1.4904 14 6 2.2790 -6.5079 -0.7543 15 6 2.0858 -6.0275 0.6688 16 1 3.0515 -5.7850 1.1123 17 6 1.2931 -6.9144 1.6198 18 7 0.5515 -5.9914 2.5120 19 6 -0.2327 -6.3551 3.5461 20 8 -0.7894 -5.5062 4.2147 21 6 -0.4157 -7.7854 3.8667 22 6 -1.2032 -8.3194 4.9141 23 6 -1.0678 -9.6629 4.8197 24 6 -1.7131 -10.6914 5.7124 25 6 -0.9241 -11.9698 6.0025 26 6 -2.1394 -12.0143 5.0727 27 7 -0.2476 -9.9099 3.7758 28 1 0.0258 -10.7930 3.4819 29 7 0.1226 -8.8069 3.2311 30 6 0.8248 -4.5964 2.0770 31 6 1.1986 -4.7507 0.6008 32 1 0.3089 -4.9318 -0.0024 33 1 -0.4851 0.8400 0.0004 34 1 0.3557 -2.3881 -0.0005 35 1 3.0369 -3.3169 -1.8849 36 1 1.4608 -4.1240 -2.0078 37 1 4.0686 -5.3366 -1.0273 38 1 3.2086 -5.7189 -2.5325 39 1 2.8301 -7.4482 -0.7575 40 1 1.3105 -6.6434 -1.2356 41 1 1.9680 -7.5401 2.2036 42 1 0.5953 -7.5353 1.0579 43 1 -1.7892 -7.7706 5.6365 44 1 -2.3389 -10.2941 6.5114 45 1 0.0615 -12.0671 5.5473 46 1 -1.0312 -12.4137 6.9922 47 1 -3.0454 -12.4874 5.4512 48 1 -1.9535 -12.1405 4.0062 49 1 -0.0670 -3.9789 2.1847 50 1 1.6542 -4.1730 2.6434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992820231.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:22 Heat of formation + Delta-G solvation = 54.895179 kcal Electronic energy + Delta-G solvation = -30181.822868 eV Core-core repulsion = 26210.386662 eV Total energy + Delta-G solvation = -3971.436206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.80619 -41.50225 -39.72933 -38.06603 -36.97986 -35.58714 -33.32255 -33.07407 -32.04685 -31.18190 -30.47786 -28.09570 -26.62560 -25.46510 -24.54506 -23.59425 -23.26805 -22.10636 -22.08645 -21.51839 -21.03570 -19.98785 -19.10824 -18.78336 -17.71207 -17.28564 -16.88466 -16.62521 -16.39507 -16.19364 -15.69975 -15.56515 -15.25736 -15.13485 -15.01541 -14.73385 -14.45732 -14.17025 -13.82673 -13.62599 -13.45548 -13.26980 -13.12985 -12.86171 -12.80491 -12.60240 -12.45765 -12.20540 -12.05375 -12.00736 -11.92987 -11.86690 -11.72810 -11.48612 -11.43429 -11.28398 -11.22107 -10.87558 -10.82152 -10.50361 -9.78367 -9.73429 -8.97615 -7.91397 -5.19460 0.43356 0.96316 1.46350 1.48276 1.56365 1.64823 2.02135 2.25960 2.57144 3.00503 3.13492 3.35977 3.41342 3.43216 3.66140 3.75474 3.78406 4.02324 4.04401 4.11400 4.18801 4.21425 4.26993 4.44436 4.51004 4.54799 4.56802 4.60364 4.68492 4.73313 4.76302 4.76502 4.81996 4.85249 4.92334 5.00518 5.08885 5.11852 5.14981 5.20315 5.26625 5.28577 5.35630 5.39895 5.42765 5.51719 5.54281 5.71569 6.01721 6.30189 6.40594 6.73502 7.02816 7.35953 8.12800 8.35199 9.32190 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002369 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.877028 B =11818.589962 C =13072.870228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.231 4.231 8 H 0.077 0.923 9 N -0.736 5.736 10 C 0.192 3.808 11 H 0.047 0.953 12 C -0.129 4.129 13 C -0.107 4.107 14 C -0.091 4.091 15 C -0.094 4.094 16 H 0.087 0.913 17 C 0.130 3.870 18 N -0.609 5.609 19 C 0.603 3.397 20 O -0.582 6.582 21 C -0.027 4.027 22 C -0.198 4.198 23 C 0.070 3.930 24 C -0.108 4.108 25 C -0.162 4.162 26 C -0.164 4.164 27 N -0.362 5.362 28 H 0.460 0.540 29 N -0.248 5.248 30 C 0.128 3.872 31 C -0.096 4.096 32 H 0.073 0.927 33 H 0.248 0.752 34 H 0.370 0.630 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.158 0.842 44 H 0.139 0.861 45 H 0.100 0.900 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.100 0.900 49 H 0.047 0.953 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -32.788 6.944 33.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.083 3.917 11 H 0.065 0.935 12 C -0.169 4.169 13 C -0.145 4.145 14 C -0.128 4.128 15 C -0.113 4.113 16 H 0.105 0.895 17 C 0.009 3.991 18 N -0.342 5.342 19 C 0.391 3.609 20 O -0.460 6.460 21 C -0.186 4.186 22 C -0.226 4.226 23 C -0.057 4.057 24 C -0.127 4.127 25 C -0.200 4.200 26 C -0.201 4.201 27 N -0.079 5.079 28 H 0.308 0.692 29 N -0.086 5.086 30 C 0.006 3.994 31 C -0.116 4.116 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.201 0.799 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.176 0.824 44 H 0.157 0.843 45 H 0.119 0.881 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.118 0.882 49 H 0.065 0.935 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.491 -32.437 6.471 33.170 hybrid contribution -0.781 1.774 0.528 2.009 sum 1.710 -30.663 6.999 31.498 Atomic orbital electron populations 1.69826 1.06642 1.25785 1.60001 1.25542 0.96299 1.01049 1.04308 0.85191 0.77725 0.79857 0.77339 1.21427 1.22683 1.19383 1.19603 0.91363 0.85179 1.40181 0.90527 1.42633 1.05307 1.01029 1.88510 1.20015 0.93472 0.83731 0.94473 0.93484 1.21984 0.99751 0.97222 0.97946 1.21492 0.98914 0.92904 1.01166 1.21256 1.01083 0.98789 0.91692 1.21922 0.98550 0.93829 0.97033 0.89516 1.21823 0.94954 0.91226 0.91094 1.49108 1.46346 1.08757 1.29951 1.17015 0.78094 0.86490 0.79263 1.90776 1.50669 1.52496 1.52097 1.21505 1.05036 0.91888 1.00203 1.21570 1.05650 0.93216 1.02175 1.20686 0.97446 0.94561 0.92969 1.20652 1.04510 0.86908 1.00666 1.23229 0.96496 0.97580 1.02655 1.23229 1.00322 0.96993 0.99578 1.43311 1.34240 1.08369 1.22009 0.69221 1.73596 1.21258 0.91833 1.21875 1.21771 0.99965 0.82104 0.95565 1.22167 0.98978 0.97127 0.93330 0.90909 0.94284 0.79855 0.93917 0.94037 0.91443 0.90685 0.88537 0.91628 0.89272 0.90141 0.82407 0.84300 0.88108 0.86313 0.86371 0.88194 0.93462 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.76 13.06 21.65 0.28 -61.47 16 2 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 3 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.23 -13.02 9.95 84.03 0.84 -12.19 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -37.69 5.08 -325.24 -1.65 -39.34 16 10 C 0.19 7.45 2.46 44.51 0.11 7.56 16 11 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 12 C -0.13 -4.32 5.44 30.41 0.17 -4.15 16 13 C -0.11 -2.44 5.83 30.72 0.18 -2.26 16 14 C -0.09 -1.76 5.73 30.37 0.17 -1.59 16 15 C -0.09 -2.26 2.28 -10.63 -0.02 -2.29 16 16 H 0.09 2.05 7.93 -2.39 -0.02 2.03 16 17 C 0.13 3.15 5.27 85.81 0.45 3.61 16 18 N -0.61 -20.21 3.38 -816.50 -2.76 -22.97 16 19 C 0.60 21.93 7.87 86.75 0.68 22.61 16 20 O -0.58 -25.96 17.22 -3.91 -0.07 -26.03 16 21 C -0.03 -0.77 6.98 42.46 0.30 -0.47 16 22 C -0.20 -4.74 10.73 22.41 0.24 -4.50 16 23 C 0.07 1.09 6.64 41.40 0.28 1.37 16 24 C -0.11 -0.93 6.26 -11.54 -0.07 -1.01 16 25 C -0.16 -0.68 10.22 30.62 0.31 -0.36 16 26 C -0.16 -0.72 10.23 30.62 0.31 -0.41 16 27 N -0.36 -5.08 6.80 -47.93 -0.33 -5.41 16 28 H 0.46 2.71 8.96 -219.99 -1.97 0.74 16 29 N -0.25 -5.36 9.81 -48.17 -0.47 -5.83 16 30 C 0.13 4.87 6.49 85.98 0.56 5.43 16 31 C -0.10 -3.22 2.02 -10.32 -0.02 -3.25 16 32 H 0.07 2.57 8.04 -2.38 -0.02 2.55 16 33 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.37 20.84 7.81 -92.71 -0.72 20.12 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.06 1.32 8.05 -2.39 -0.02 1.30 16 41 H 0.09 1.91 7.60 -2.39 -0.02 1.89 16 42 H 0.08 1.82 7.85 -2.39 -0.02 1.80 16 43 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 44 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 46 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.05 2.13 8.07 -2.39 -0.02 2.11 16 50 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -78.24 402.11 0.24 -78.00 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: -1.74 Total: 29.53 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 4.95 Total: 3.84 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -4.93 Total: -135.03 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.07 Total: -26.03 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -78.24 0.24 -78.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992820231.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.897 kcal (2) G-P(sol) polarization free energy of solvation -78.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds