Wall clock time and date at job start Wed Apr 1 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99945 * 2 1 4 4 H 1.48502 * 109.47037 * 269.99730 * 3 2 1 5 5 H 1.48497 * 109.46926 * 29.99685 * 3 2 1 6 6 H 1.48497 * 109.47166 * 150.00189 * 3 2 1 7 7 C 1.38809 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00088 * 183.34201 * 7 2 1 9 9 N 1.36935 * 119.99996 * 3.34496 * 7 2 1 10 10 C 1.47013 * 121.37252 * 327.39602 * 9 7 2 11 11 C 1.50327 * 109.16350 * 222.96561 * 10 9 7 12 12 C 1.29451 * 123.65145 * 349.02704 * 11 10 9 13 13 C 1.50703 * 117.69178 * 180.85620 * 12 11 10 14 14 N 1.46497 * 109.47258 * 94.99825 * 13 12 11 15 15 C 1.34769 * 120.00151 * 180.02562 * 14 13 12 16 16 O 1.21631 * 119.99870 * 355.49138 * 15 14 13 17 17 C 1.47172 * 120.00248 * 175.50059 * 15 14 13 18 18 C 1.38403 * 126.88099 * 5.80250 * 17 15 14 19 19 C 1.39672 * 105.35616 * 179.97438 * 18 17 15 20 20 N 1.30859 * 107.86257 * 0.34980 * 19 18 17 21 21 N 1.28447 * 110.92901 * 359.77770 * 20 19 18 22 22 C 1.46495 * 125.19092 * 179.97438 * 21 20 19 23 23 C 1.54267 * 110.03488 * 63.26315 * 22 21 20 24 24 C 1.54959 * 104.15855 * 217.13562 * 23 22 21 25 25 C 1.54884 * 102.78096 * 37.88958 * 24 23 22 26 26 C 1.53878 * 110.03342 * 306.04600 * 22 21 20 27 27 C 1.49963 * 124.61476 * 1.13359 * 12 11 10 28 28 C 1.47340 * 121.37721 * 147.41607 * 9 7 2 29 29 H 0.97005 * 119.99958 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.52017 * 103.06218 * 10 9 7 31 31 H 1.08992 * 109.52087 * 342.87395 * 10 9 7 32 32 H 1.08007 * 118.16956 * 168.99904 * 11 10 9 33 33 H 1.09007 * 109.46707 * 334.99791 * 13 12 11 34 34 H 1.08992 * 109.47107 * 215.00029 * 13 12 11 35 35 H 0.97002 * 119.99923 * 359.72109 * 14 13 12 36 36 H 1.08001 * 127.32219 * 0.03691 * 18 17 15 37 37 H 1.07999 * 126.06895 * 180.09956 * 19 18 17 38 38 H 1.08999 * 110.01524 * 184.66024 * 22 21 20 39 39 H 1.08995 * 110.48287 * 335.78623 * 23 22 21 40 40 H 1.08999 * 110.48416 * 98.42359 * 23 22 21 41 41 H 1.09002 * 110.72261 * 279.56826 * 24 23 22 42 42 H 1.09005 * 110.76574 * 156.22311 * 24 23 22 43 43 H 1.09001 * 110.48651 * 203.40185 * 25 24 23 44 44 H 1.09004 * 110.60138 * 80.81282 * 25 24 23 45 45 H 1.09000 * 110.03409 * 238.57689 * 26 22 21 46 46 H 1.09001 * 110.03192 * 359.95480 * 26 22 21 47 47 H 1.08996 * 109.31510 * 101.00894 * 27 12 11 48 48 H 1.08999 * 109.31614 * 220.43955 * 27 12 11 49 49 H 1.08998 * 109.77763 * 237.78925 * 28 9 7 50 50 H 1.08993 * 109.77729 * 358.60078 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0889 -1.2028 0.0551 9 7 1.3273 -2.3870 -0.0681 10 6 -0.0035 -2.5396 0.5376 11 6 -0.0735 -3.8626 1.2481 12 6 0.8217 -4.7899 1.1275 13 6 0.6070 -6.0736 1.8872 14 7 -0.0440 -7.0542 1.0150 15 6 -0.3369 -8.2834 1.4836 16 8 0.0122 -8.6065 2.6031 17 6 -1.0790 -9.2347 0.6409 18 6 -1.4455 -9.0616 -0.6824 19 6 -2.1243 -10.2305 -1.0342 20 7 -2.1501 -11.0111 0.0158 21 7 -1.5502 -10.4625 1.0102 22 6 -1.3955 -11.0618 2.3380 23 6 -0.5490 -12.3479 2.2419 24 6 -1.2001 -13.3079 3.2693 25 6 -2.7108 -13.0046 3.1120 26 6 -2.7694 -11.4790 2.8914 27 6 2.0602 -4.6745 0.2898 28 6 1.8962 -3.5618 -0.7517 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7647 -2.5040 -0.2418 31 1 -0.1735 -1.7335 1.2512 32 1 -0.9176 -4.0495 1.8955 33 1 -0.0258 -5.8814 2.7538 34 1 1.5687 -6.4645 2.2191 35 1 -0.2683 -6.8173 0.1014 36 1 -1.2477 -8.2052 -1.3100 37 1 -2.5552 -10.4494 -2.0000 38 1 -0.9204 -10.3517 3.0148 39 1 -0.6062 -12.7681 1.2378 40 1 0.4870 -12.1438 2.5126 41 1 -0.8630 -13.0776 4.2800 42 1 -0.9864 -14.3467 3.0171 43 1 -3.2515 -13.2802 4.0175 44 1 -3.1199 -13.5308 2.2495 45 1 -2.9606 -10.9719 3.8371 46 1 -3.5513 -11.2348 2.1723 47 1 2.9107 -4.4487 0.9330 48 1 2.2393 -5.6205 -0.2211 49 1 1.2230 -3.8893 -1.5440 50 1 2.8682 -3.3078 -1.1742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000743457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:16 Heat of formation + Delta-G solvation = 72.673248 kcal Electronic energy + Delta-G solvation = -29738.261200 eV Core-core repulsion = 25767.595910 eV Total energy + Delta-G solvation = -3970.665291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.76756 -39.53205 -38.25786 -37.74478 -35.08276 -33.12647 -32.43665 -31.39317 -30.55883 -29.71515 -29.15928 -27.92546 -27.01535 -24.55486 -23.07927 -22.66897 -22.43214 -21.20809 -21.12209 -20.75610 -19.70595 -18.26714 -17.63779 -16.55132 -16.12383 -15.97142 -15.89764 -15.66452 -15.16762 -14.91249 -14.65240 -14.44195 -14.09670 -13.89632 -13.75074 -13.62189 -13.48094 -13.24563 -12.96539 -12.28982 -12.20293 -12.07167 -11.95497 -11.63150 -11.56003 -11.51086 -11.42554 -11.31353 -10.98718 -10.92217 -10.88357 -10.83734 -10.39913 -10.35199 -10.07084 -9.93096 -9.64382 -9.42316 -9.19869 -9.01898 -8.71569 -8.10355 -6.66102 -5.85944 -3.33308 1.11563 2.12631 2.45867 2.60633 3.09927 3.34707 3.41395 3.41941 3.42529 4.04147 4.15032 4.43996 4.48137 4.50349 4.59000 4.91877 4.99025 5.03299 5.07778 5.10661 5.15475 5.24466 5.29885 5.38787 5.40919 5.45466 5.50035 5.52871 5.57988 5.65206 5.74876 5.76731 5.82842 5.89006 5.93846 6.04098 6.13122 6.28300 6.30577 6.37606 6.49065 6.60767 6.71619 6.84748 7.14248 7.26155 7.29007 7.41056 7.72375 7.80380 7.90780 8.03419 8.40407 9.17634 9.76212 10.38336 11.23910 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.001936 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.867980 B =14457.985003 C =14710.899607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.192 3.808 11 C -0.120 4.120 12 C -0.171 4.171 13 C 0.159 3.841 14 N -0.701 5.701 15 C 0.588 3.412 16 O -0.548 6.548 17 C -0.038 4.038 18 C -0.188 4.188 19 C -0.007 4.007 20 N -0.275 5.275 21 N -0.248 5.248 22 C 0.130 3.870 23 C -0.130 4.130 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.090 4.090 28 C 0.144 3.856 29 H 0.255 0.745 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.161 0.839 37 H 0.185 0.815 38 H 0.138 0.862 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.024 0.976 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.878 -24.087 2.582 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.320 5.320 10 C 0.067 3.933 11 C -0.141 4.141 12 C -0.172 4.172 13 C 0.037 3.963 14 N -0.352 5.352 15 C 0.373 3.627 16 O -0.427 6.427 17 C -0.166 4.166 18 C -0.217 4.217 19 C -0.182 4.182 20 N -0.108 5.108 21 N -0.036 5.036 22 C 0.029 3.971 23 C -0.168 4.168 24 C -0.159 4.159 25 C -0.158 4.158 26 C -0.169 4.169 27 C -0.129 4.129 28 C 0.017 3.983 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.241 0.759 36 H 0.179 0.821 37 H 0.202 0.798 38 H 0.156 0.844 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.082 -25.208 3.929 26.014 hybrid contribution 0.488 1.829 -0.811 2.060 sum -4.594 -23.379 3.118 24.029 Atomic orbital electron populations 1.69907 1.05306 1.25615 1.54567 1.25278 0.95612 0.98282 0.99991 0.86243 0.79088 0.83429 0.77736 1.21277 1.21654 1.20443 1.19129 0.90644 0.82890 1.45273 0.91620 1.44053 1.17690 1.08596 1.61614 1.19882 0.87180 0.90686 0.95517 1.23409 0.96091 0.97958 0.96638 1.20455 0.99030 0.94388 1.03311 1.20541 0.97347 0.86500 0.91900 1.45913 1.60464 1.11785 1.16989 1.16969 0.78835 0.81495 0.85387 1.90715 1.54537 1.77234 1.20227 1.21469 1.08183 0.90779 0.96215 1.22308 1.04260 1.01299 0.93875 1.23563 1.03990 0.92444 0.98231 1.73109 1.16106 1.25797 0.95771 1.45948 1.36705 1.10665 1.10285 1.22852 0.98174 0.97414 0.78629 1.22737 0.99160 0.93744 1.01133 1.22481 0.95124 0.99248 0.99067 1.22327 0.96549 0.94892 1.02024 1.22480 0.95631 0.97089 1.01673 1.20789 0.95059 0.99081 0.97999 1.21013 0.97423 0.87652 0.92190 0.93449 0.94140 0.88304 0.88862 0.91400 0.91194 0.75911 0.82150 0.79769 0.84427 0.90220 0.90521 0.90893 0.90846 0.91166 0.91039 0.90379 0.90404 0.91781 0.92931 0.95817 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.46 10.74 55.49 0.60 -24.86 16 2 C 0.01 0.18 5.33 -17.43 -0.09 0.09 16 3 Si 0.91 21.24 29.56 -169.99 -5.02 16.22 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.25 -6.68 9.66 -15.06 -0.15 -6.82 16 8 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 9 N -0.60 -14.43 3.00 -173.55 -0.52 -14.95 16 10 C 0.19 4.40 5.16 -5.10 -0.03 4.37 16 11 C -0.12 -2.19 9.47 -35.78 -0.34 -2.53 16 12 C -0.17 -2.79 5.22 -100.99 -0.53 -3.32 16 13 C 0.16 2.26 5.67 -5.19 -0.03 2.23 16 14 N -0.70 -8.91 5.54 -62.65 -0.35 -9.26 16 15 C 0.59 8.07 7.79 -12.64 -0.10 7.97 16 16 O -0.55 -8.74 14.43 5.25 0.08 -8.66 16 17 C -0.04 -0.47 6.96 -82.06 -0.57 -1.05 16 18 C -0.19 -1.97 10.50 -38.99 -0.41 -2.38 16 19 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 20 N -0.28 -3.26 11.04 30.59 0.34 -2.92 16 21 N -0.25 -3.00 3.06 -49.61 -0.15 -3.15 16 22 C 0.13 1.38 3.57 -66.81 -0.24 1.14 16 23 C -0.13 -1.18 6.52 -25.03 -0.16 -1.34 16 24 C -0.12 -0.84 6.91 -24.70 -0.17 -1.01 16 25 C -0.12 -0.86 6.83 -25.08 -0.17 -1.03 16 26 C -0.13 -1.17 6.46 -25.61 -0.17 -1.34 16 27 C -0.09 -1.50 5.95 -28.09 -0.17 -1.67 16 28 C 0.14 2.85 6.59 -3.43 -0.02 2.83 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 2.55 6.46 -51.93 -0.34 2.21 16 32 H 0.09 1.53 7.73 -52.48 -0.41 1.12 16 33 H 0.07 0.99 7.78 -51.93 -0.40 0.58 16 34 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.41 4.54 7.50 -40.82 -0.31 4.24 16 36 H 0.16 1.30 7.59 -52.49 -0.40 0.90 16 37 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.14 1.68 5.43 -51.93 -0.28 1.39 16 39 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.79 7.60 -51.93 -0.39 0.40 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 LS Contribution 398.88 15.07 6.01 6.01 Total: -1.00 -30.43 398.88 -10.53 -40.96 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.96 Total: 4.75 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.55 Total: -4.12 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.09 Total: -55.15 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.43 -10.53 -40.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000743457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.631 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds