Wall clock time and date at job start Wed Apr 1 2020 02:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99945 * 2 1 4 4 H 1.48502 * 109.47037 * 269.99730 * 3 2 1 5 5 H 1.48497 * 109.46926 * 29.99685 * 3 2 1 6 6 H 1.48497 * 109.47166 * 150.00189 * 3 2 1 7 7 C 1.38809 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00088 * 183.34201 * 7 2 1 9 9 N 1.36935 * 119.99996 * 3.34496 * 7 2 1 10 10 C 1.47013 * 121.37252 * 327.39602 * 9 7 2 11 11 C 1.50327 * 109.16350 * 222.96561 * 10 9 7 12 12 C 1.29451 * 123.65145 * 349.02704 * 11 10 9 13 13 C 1.50703 * 117.69178 * 180.85620 * 12 11 10 14 14 N 1.46497 * 109.47258 * 94.99825 * 13 12 11 15 15 C 1.34769 * 120.00151 * 180.02562 * 14 13 12 16 16 O 1.21631 * 119.99870 * 355.49138 * 15 14 13 17 17 C 1.47172 * 120.00248 * 175.50059 * 15 14 13 18 18 C 1.38403 * 126.88099 * 5.80250 * 17 15 14 19 19 C 1.39672 * 105.35616 * 179.97438 * 18 17 15 20 20 N 1.30859 * 107.86257 * 0.34980 * 19 18 17 21 21 N 1.28447 * 110.92901 * 359.77770 * 20 19 18 22 22 C 1.46495 * 125.19092 * 179.97438 * 21 20 19 23 23 C 1.54267 * 110.03488 * 63.26315 * 22 21 20 24 24 C 1.54959 * 104.15855 * 217.13562 * 23 22 21 25 25 C 1.54884 * 102.78096 * 37.88958 * 24 23 22 26 26 C 1.53878 * 110.03342 * 306.04600 * 22 21 20 27 27 C 1.49963 * 124.61476 * 1.13359 * 12 11 10 28 28 C 1.47340 * 121.37721 * 147.41607 * 9 7 2 29 29 H 0.97005 * 119.99958 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.52017 * 103.06218 * 10 9 7 31 31 H 1.08992 * 109.52087 * 342.87395 * 10 9 7 32 32 H 1.08007 * 118.16956 * 168.99904 * 11 10 9 33 33 H 1.09007 * 109.46707 * 334.99791 * 13 12 11 34 34 H 1.08992 * 109.47107 * 215.00029 * 13 12 11 35 35 H 0.97002 * 119.99923 * 359.72109 * 14 13 12 36 36 H 1.08001 * 127.32219 * 0.03691 * 18 17 15 37 37 H 1.07999 * 126.06895 * 180.09956 * 19 18 17 38 38 H 1.08999 * 110.01524 * 184.66024 * 22 21 20 39 39 H 1.08995 * 110.48287 * 335.78623 * 23 22 21 40 40 H 1.08999 * 110.48416 * 98.42359 * 23 22 21 41 41 H 1.09002 * 110.72261 * 279.56826 * 24 23 22 42 42 H 1.09005 * 110.76574 * 156.22311 * 24 23 22 43 43 H 1.09001 * 110.48651 * 203.40185 * 25 24 23 44 44 H 1.09004 * 110.60138 * 80.81282 * 25 24 23 45 45 H 1.09000 * 110.03409 * 238.57689 * 26 22 21 46 46 H 1.09001 * 110.03192 * 359.95480 * 26 22 21 47 47 H 1.08996 * 109.31510 * 101.00894 * 27 12 11 48 48 H 1.08999 * 109.31614 * 220.43955 * 27 12 11 49 49 H 1.08998 * 109.77763 * 237.78925 * 28 9 7 50 50 H 1.08993 * 109.77729 * 358.60078 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0889 -1.2028 0.0551 9 7 1.3273 -2.3870 -0.0681 10 6 -0.0035 -2.5396 0.5376 11 6 -0.0735 -3.8626 1.2481 12 6 0.8217 -4.7899 1.1275 13 6 0.6070 -6.0736 1.8872 14 7 -0.0440 -7.0542 1.0150 15 6 -0.3369 -8.2834 1.4836 16 8 0.0122 -8.6065 2.6031 17 6 -1.0790 -9.2347 0.6409 18 6 -1.4455 -9.0616 -0.6824 19 6 -2.1243 -10.2305 -1.0342 20 7 -2.1501 -11.0111 0.0158 21 7 -1.5502 -10.4625 1.0102 22 6 -1.3955 -11.0618 2.3380 23 6 -0.5490 -12.3479 2.2419 24 6 -1.2001 -13.3079 3.2693 25 6 -2.7108 -13.0046 3.1120 26 6 -2.7694 -11.4790 2.8914 27 6 2.0602 -4.6745 0.2898 28 6 1.8962 -3.5618 -0.7517 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7647 -2.5040 -0.2418 31 1 -0.1735 -1.7335 1.2512 32 1 -0.9176 -4.0495 1.8955 33 1 -0.0258 -5.8814 2.7538 34 1 1.5687 -6.4645 2.2191 35 1 -0.2683 -6.8173 0.1014 36 1 -1.2477 -8.2052 -1.3100 37 1 -2.5552 -10.4494 -2.0000 38 1 -0.9204 -10.3517 3.0148 39 1 -0.6062 -12.7681 1.2378 40 1 0.4870 -12.1438 2.5126 41 1 -0.8630 -13.0776 4.2800 42 1 -0.9864 -14.3467 3.0171 43 1 -3.2515 -13.2802 4.0175 44 1 -3.1199 -13.5308 2.2495 45 1 -2.9606 -10.9719 3.8371 46 1 -3.5513 -11.2348 2.1723 47 1 2.9107 -4.4487 0.9330 48 1 2.2393 -5.6205 -0.2211 49 1 1.2230 -3.8893 -1.5440 50 1 2.8682 -3.3078 -1.1742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000743457.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:15 Heat of formation + Delta-G solvation = 55.874779 kcal Electronic energy + Delta-G solvation = -29738.989637 eV Core-core repulsion = 25767.595910 eV Total energy + Delta-G solvation = -3971.393727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.60949 -40.65733 -39.26634 -38.93401 -36.47961 -34.67333 -33.26713 -32.82524 -31.78887 -31.32856 -29.82603 -28.70551 -28.48358 -26.14257 -24.46569 -23.98724 -23.22472 -22.76209 -21.77796 -21.66293 -20.64574 -19.51040 -19.08736 -17.59826 -17.30327 -17.08439 -16.99891 -16.72864 -16.64852 -16.01010 -15.81771 -15.43800 -15.33007 -15.21002 -15.06172 -14.75292 -14.45677 -14.39543 -14.11250 -13.88374 -13.62895 -13.28489 -12.96572 -12.91650 -12.71969 -12.67248 -12.62852 -12.23430 -12.18527 -12.14921 -12.07778 -12.00005 -11.79115 -11.75409 -11.56331 -11.25675 -11.09281 -10.67892 -10.41618 -10.06405 -9.96508 -9.65154 -8.59859 -7.88780 -5.38514 0.19269 1.07075 1.46941 1.48163 1.48851 1.57254 1.65057 2.11587 2.33196 2.50324 3.30092 3.32790 3.47345 3.53442 3.65977 3.79343 3.88057 3.91763 3.98385 4.12867 4.29240 4.36646 4.38240 4.44872 4.46173 4.56053 4.59595 4.64789 4.68275 4.74658 4.75438 4.86027 4.87480 4.92260 4.94910 5.05953 5.11492 5.13425 5.15434 5.24189 5.27728 5.36153 5.43663 5.55794 5.58043 5.63944 5.77657 5.79015 6.19035 6.35985 6.41003 6.97245 7.10339 7.17452 7.84128 8.41058 9.18857 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.001936 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.867980 B =14457.985003 C =14710.899607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.047 4.047 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.617 5.617 10 C 0.203 3.797 11 C -0.138 4.138 12 C -0.142 4.142 13 C 0.170 3.830 14 N -0.693 5.693 15 C 0.590 3.410 16 O -0.574 6.574 17 C -0.064 4.064 18 C -0.178 4.178 19 C -0.009 4.009 20 N -0.289 5.289 21 N -0.255 5.255 22 C 0.123 3.877 23 C -0.126 4.126 24 C -0.115 4.115 25 C -0.115 4.115 26 C -0.128 4.128 27 C -0.085 4.085 28 C 0.139 3.861 29 H 0.250 0.750 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.415 0.585 36 H 0.185 0.815 37 H 0.216 0.784 38 H 0.120 0.880 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.030 0.970 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -26.038 2.281 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.341 5.341 10 C 0.078 3.922 11 C -0.159 4.159 12 C -0.143 4.143 13 C 0.047 3.953 14 N -0.343 5.343 15 C 0.376 3.624 16 O -0.455 6.455 17 C -0.192 4.192 18 C -0.207 4.207 19 C -0.184 4.184 20 N -0.122 5.122 21 N -0.043 5.043 22 C 0.022 3.978 23 C -0.165 4.165 24 C -0.153 4.153 25 C -0.153 4.153 26 C -0.166 4.166 27 C -0.123 4.123 28 C 0.014 3.986 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.252 0.748 36 H 0.202 0.798 37 H 0.232 0.768 38 H 0.138 0.862 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.048 0.952 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.578 -27.185 3.611 27.803 hybrid contribution 0.364 2.370 -0.778 2.521 sum -4.214 -24.815 2.832 25.329 Atomic orbital electron populations 1.70093 1.06513 1.25786 1.55845 1.26001 0.96409 1.01353 1.00482 0.85260 0.78057 0.79529 0.77538 1.21101 1.22084 1.19505 1.19430 0.90939 0.84182 1.44488 0.91592 1.44328 1.17932 1.09243 1.62621 1.19487 0.86248 0.92134 0.94295 1.23054 0.98258 0.96260 0.98296 1.20548 0.97648 0.94554 1.01544 1.20323 0.97795 0.85502 0.91644 1.45700 1.60186 1.11243 1.17209 1.17104 0.78479 0.81657 0.85111 1.90708 1.55622 1.77777 1.21421 1.21487 1.09520 0.91161 0.97050 1.22669 1.02961 1.01981 0.93122 1.24158 1.03373 0.91949 0.98930 1.73107 1.16385 1.26450 0.96249 1.46088 1.36866 1.10685 1.10680 1.22924 0.99201 0.97462 0.78181 1.22707 0.98932 0.93554 1.01261 1.22489 0.94597 0.99400 0.98798 1.22314 0.96926 0.93301 1.02715 1.22470 0.94211 0.98586 1.01325 1.20728 0.94943 0.99352 0.97303 1.21191 0.97271 0.87080 0.93094 0.94026 0.96787 0.92082 0.87032 0.91448 0.90753 0.74804 0.79782 0.76752 0.86207 0.91217 0.90922 0.90058 0.89470 0.89474 0.91304 0.89883 0.91790 0.91950 0.89450 0.95160 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.09 10.74 21.65 0.23 -53.86 16 2 C -0.05 -2.59 5.33 84.86 0.45 -2.14 16 3 Si 0.97 44.23 29.56 68.60 2.03 46.26 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.26 -14.05 9.66 84.03 0.81 -13.24 16 8 H 0.07 3.48 7.83 -2.91 -0.02 3.45 16 9 N -0.62 -30.13 3.00 -703.00 -2.11 -32.24 16 10 C 0.20 9.57 5.16 85.42 0.44 10.01 16 11 C -0.14 -4.96 9.47 27.11 0.26 -4.70 16 12 C -0.14 -4.37 5.22 -15.14 -0.08 -4.45 16 13 C 0.17 4.45 5.67 85.63 0.49 4.94 16 14 N -0.69 -16.08 5.54 -470.37 -2.60 -18.68 16 15 C 0.59 15.44 7.79 86.59 0.67 16.12 16 16 O -0.57 -17.97 14.43 -4.13 -0.06 -18.03 16 17 C -0.06 -1.52 6.96 40.79 0.28 -1.24 16 18 C -0.18 -3.31 10.50 22.66 0.24 -3.07 16 19 C -0.01 -0.16 12.03 85.18 1.02 0.86 16 20 N -0.29 -6.48 11.04 -57.14 -0.63 -7.11 16 21 N -0.25 -5.99 3.06 -310.88 -0.95 -6.94 16 22 C 0.12 2.58 3.57 45.72 0.16 2.74 16 23 C -0.13 -2.22 6.52 31.69 0.21 -2.01 16 24 C -0.12 -1.41 6.91 31.91 0.22 -1.19 16 25 C -0.11 -1.47 6.83 31.67 0.22 -1.25 16 26 C -0.13 -2.22 6.46 31.32 0.20 -2.01 16 27 C -0.08 -2.61 5.95 29.72 0.18 -2.44 16 28 C 0.14 5.35 6.59 86.32 0.57 5.92 16 29 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 30 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 3.30 6.46 -2.39 -0.02 3.29 16 32 H 0.11 3.57 7.73 -2.91 -0.02 3.55 16 33 H 0.07 1.83 7.78 -2.38 -0.02 1.81 16 34 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 35 H 0.41 8.14 7.50 -92.71 -0.70 7.44 16 36 H 0.18 2.37 7.59 -2.91 -0.02 2.35 16 37 H 0.22 2.30 8.06 -2.91 -0.02 2.28 16 38 H 0.12 2.96 5.43 -2.39 -0.01 2.95 16 39 H 0.07 1.36 7.79 -2.39 -0.02 1.34 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 45 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 Total: -1.00 -67.24 398.88 2.49 -64.75 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.25 Total: 23.01 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 6.34 Total: 2.84 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -6.07 Total: -118.83 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.06 Total: -18.03 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -67.24 2.49 -64.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000743457.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.623 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds