Wall clock time and date at job start Wed Apr 1 2020 03:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38554 * 120.01745 * 2 1 4 4 C 1.40068 * 117.82067 * 180.26259 * 3 2 1 5 5 C 1.48135 * 121.15042 * 179.73831 * 4 3 2 6 6 O 1.21520 * 119.99917 * 32.25614 * 5 4 3 7 7 N 1.34770 * 120.00382 * 212.25787 * 5 4 3 8 8 C 1.46928 * 120.63390 * 177.45002 * 7 5 4 9 9 C 1.53190 * 108.77486 * 233.58626 * 8 7 5 10 10 C 1.53040 * 109.31263 * 305.36105 * 9 8 7 11 11 C 1.53001 * 109.46042 * 181.38768 * 10 9 8 12 12 H 1.09000 * 109.99765 * 52.33786 * 11 10 9 13 13 C 1.54313 * 109.77267 * 173.49134 * 11 10 9 14 14 C 1.55157 * 102.86317 * 141.88905 * 13 11 10 15 15 C 1.54919 * 101.57711 * 324.30315 * 14 13 11 16 16 N 1.47019 * 109.88226 * 291.24025 * 11 10 9 17 17 C 1.36942 * 125.64553 * 61.68207 * 16 11 10 18 18 H 1.08000 * 119.99891 * 298.70314 * 17 16 11 19 19 C 1.38811 * 119.99859 * 118.98175 * 17 16 11 20 20 N 1.31624 * 119.99566 * 184.27191 * 19 17 16 21 21 Si 1.86800 * 120.00251 * 4.27266 * 19 17 16 22 22 H 1.48493 * 109.47063 * 94.51740 * 21 19 17 23 23 H 1.48497 * 109.46881 * 214.51929 * 21 19 17 24 24 H 1.48501 * 109.47002 * 334.51907 * 21 19 17 25 25 C 1.53038 * 109.53594 * 61.36538 * 10 9 8 26 26 C 1.46930 * 120.62992 * 357.42483 * 7 5 4 27 27 C 1.39771 * 117.70613 * 359.46764 * 4 3 2 28 28 N 1.31895 * 119.65499 * 0.27345 * 27 4 3 29 29 N 1.28275 * 122.32911 * 0.02562 * 28 27 4 30 30 H 1.08996 * 109.47064 * 270.28373 * 1 2 3 31 31 H 1.09001 * 109.46997 * 30.27892 * 1 2 3 32 32 H 1.08997 * 109.47107 * 150.28275 * 1 2 3 33 33 H 1.08004 * 121.09054 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.58956 * 113.79200 * 8 7 5 35 35 H 1.09000 * 109.58501 * 353.37059 * 8 7 5 36 36 H 1.09002 * 109.49458 * 185.41143 * 9 8 7 37 37 H 1.08994 * 109.52671 * 65.33142 * 9 8 7 38 38 H 1.09001 * 109.46019 * 301.36055 * 10 9 8 39 39 H 1.08997 * 110.92687 * 23.47121 * 13 11 10 40 40 H 1.09004 * 110.59075 * 260.14181 * 13 11 10 41 41 H 1.08997 * 111.00279 * 206.22982 * 14 13 11 42 42 H 1.08997 * 111.04371 * 82.38637 * 14 13 11 43 43 H 1.09001 * 110.36290 * 278.17068 * 15 14 13 44 44 H 1.08995 * 110.45469 * 155.89751 * 15 14 13 45 45 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.49325 * 58.58925 * 25 10 9 47 47 H 1.09001 * 109.49175 * 178.68145 * 25 10 9 48 48 H 1.09001 * 109.58698 * 246.19992 * 26 7 5 49 49 H 1.08996 * 109.58390 * 6.62615 * 26 7 5 50 50 H 1.07993 * 120.17124 * 180.29395 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0057 5 6 4.4141 2.3835 -0.0119 6 8 4.0069 3.3815 0.5492 7 7 5.6064 2.4025 -0.6398 8 6 6.3999 3.6374 -0.7024 9 6 6.7457 3.9276 -2.1663 10 6 7.4365 2.7052 -2.7751 11 6 7.8144 3.0039 -4.2273 12 1 8.3803 3.9339 -4.2815 13 6 8.6540 1.8416 -4.7978 14 6 8.1407 1.7288 -6.2577 15 6 6.6376 2.0619 -6.0854 16 7 6.5995 3.1091 -5.0486 17 6 5.6009 4.0312 -4.8818 18 1 5.0404 4.0592 -3.9590 19 6 5.3051 4.9260 -5.9009 20 7 4.4037 5.8660 -5.7103 21 14 6.1864 4.7961 -7.5429 22 1 5.3673 3.9882 -8.4817 23 1 6.3877 6.1556 -8.1054 24 1 7.5047 4.1414 -7.3467 25 6 6.4865 1.5061 -2.7317 26 6 6.1377 1.1884 -1.2743 27 6 4.2017 -0.1154 0.0005 28 7 3.4484 -1.1980 0.0059 29 7 2.1668 -1.1419 0.0052 30 1 -0.3633 0.0051 1.0276 31 1 -0.3633 0.8875 -0.5182 32 1 -0.3633 -0.8925 -0.5094 33 1 1.6783 2.1453 0.0004 34 1 7.3178 3.5116 -0.1281 35 1 5.8208 4.4650 -0.2928 36 1 7.4143 4.7870 -2.2187 37 1 5.8323 4.1430 -2.7206 38 1 8.3369 2.4756 -2.2054 39 1 8.4642 0.9187 -4.2499 40 1 9.7151 2.0905 -4.7803 41 1 8.2753 0.7179 -6.6421 42 1 8.6310 2.4583 -6.9024 43 1 6.0892 1.1800 -5.7542 44 1 6.2212 2.4379 -7.0199 45 1 4.1967 6.4910 -6.4226 46 1 5.5752 1.7440 -3.2804 47 1 6.9706 0.6419 -3.1866 48 1 7.0343 0.8628 -0.7467 49 1 5.3856 0.4002 -1.2419 50 1 5.2781 -0.2031 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004419364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:15 Heat of formation + Delta-G solvation = 69.708676 kcal Electronic energy + Delta-G solvation = -31719.698185 eV Core-core repulsion = 27748.904340 eV Total energy + Delta-G solvation = -3970.793844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.57351 -39.94661 -38.55873 -36.54517 -34.33007 -33.75971 -32.72372 -32.43953 -30.78981 -29.95244 -28.62362 -28.16773 -25.66438 -24.87637 -24.26661 -23.18700 -22.99540 -21.02178 -20.43987 -19.61935 -18.73392 -18.30099 -17.12692 -16.93530 -16.70928 -16.01740 -15.86167 -15.52973 -14.86485 -14.64701 -14.49702 -13.99406 -13.85978 -13.70479 -13.45537 -13.22613 -13.19120 -12.98137 -12.87011 -12.64849 -12.53913 -12.45624 -11.90500 -11.60359 -11.34191 -11.13167 -11.06570 -11.03472 -10.89759 -10.63350 -10.57151 -10.51288 -10.29620 -10.23744 -9.95417 -9.85515 -9.80173 -9.68461 -9.52121 -9.33726 -8.60153 -8.47920 -6.42909 -5.95027 -3.83322 0.24141 0.62332 2.58720 2.87746 3.28249 3.38034 3.39983 3.46353 3.74461 4.08056 4.18112 4.32769 4.45345 4.63281 4.86496 4.87506 4.98460 5.06032 5.12024 5.22587 5.27957 5.29993 5.34135 5.45404 5.48795 5.55459 5.57040 5.59063 5.61188 5.73445 5.79057 5.81984 5.93723 5.95281 6.09368 6.10300 6.18995 6.23751 6.33362 6.34578 6.54611 6.57999 6.68609 6.77605 6.80817 6.88402 7.00515 7.20757 7.34891 8.02827 8.08742 8.45058 8.49702 8.81355 9.56568 10.31546 11.04864 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.003572 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.720473 B = 7836.961787 C = 8214.069211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.069 3.931 3 C -0.062 4.062 4 C -0.117 4.117 5 C 0.561 3.439 6 O -0.530 6.530 7 N -0.588 5.588 8 C 0.113 3.887 9 C -0.145 4.145 10 C -0.084 4.084 11 C 0.161 3.839 12 H 0.040 0.960 13 C -0.128 4.128 14 C -0.138 4.138 15 C 0.120 3.880 16 N -0.598 5.598 17 C -0.261 4.261 18 H 0.081 0.919 19 C 0.051 3.949 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.256 1.256 25 C -0.120 4.120 26 C 0.073 3.927 27 C 0.045 3.955 28 N -0.239 5.239 29 N -0.235 5.235 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.116 0.884 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.023 0.977 44 H 0.035 0.965 45 H 0.265 0.735 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.072 0.928 49 H 0.096 0.904 50 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 -11.063 9.618 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.075 4.075 3 C -0.091 4.091 4 C -0.131 4.131 5 C 0.347 3.653 6 O -0.407 6.407 7 N -0.319 5.319 8 C -0.008 4.008 9 C -0.182 4.182 10 C -0.105 4.105 11 C 0.055 3.945 12 H 0.058 0.942 13 C -0.166 4.166 14 C -0.176 4.176 15 C -0.004 4.004 16 N -0.325 5.325 17 C -0.389 4.389 18 H 0.098 0.902 19 C -0.152 4.152 20 N -0.537 5.537 21 Si 0.721 3.279 22 H -0.215 1.215 23 H -0.230 1.230 24 H -0.180 1.180 25 C -0.158 4.158 26 C -0.049 4.049 27 C -0.119 4.119 28 N -0.080 5.080 29 N -0.078 5.078 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.178 0.822 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.053 0.947 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.114 0.886 50 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.673 -11.955 9.856 15.584 hybrid contribution 0.619 1.651 -1.164 2.113 sum 2.292 -10.304 8.692 13.674 Atomic orbital electron populations 1.20720 0.86849 1.04539 1.03825 1.22924 0.99407 0.89815 0.95397 1.22468 0.93011 1.00740 0.92931 1.21248 0.95369 0.95566 1.00885 1.17889 0.81055 0.86787 0.79564 1.90793 1.70698 1.34359 1.44813 1.47955 1.18569 1.12481 1.52935 1.21811 0.94269 0.85782 0.98921 1.22402 1.04903 0.97556 0.93351 1.21441 0.96456 0.94622 0.97973 1.21108 0.88524 0.95063 0.89806 0.94176 1.22630 0.98605 0.99073 0.96280 1.22793 0.98068 1.00121 0.96663 1.21879 0.92994 0.92310 0.93261 1.44428 1.19513 1.33863 1.34661 1.18402 1.10166 1.07608 1.02696 0.90233 1.26015 0.96003 0.93843 0.99388 1.69806 1.33695 1.16896 1.33298 0.86611 0.81501 0.76070 0.83738 1.21504 1.23029 1.18035 1.21894 1.02091 0.98430 0.93422 1.22751 0.99399 0.87074 0.95667 1.25074 1.03179 0.88822 0.94834 1.73068 0.99240 1.26694 1.08963 1.72787 1.01965 1.24973 1.08120 0.89618 0.89786 0.89629 0.82164 0.92080 0.89262 0.91432 0.86647 0.92927 0.91563 0.92276 0.92227 0.91757 0.95866 0.94685 0.92556 0.89536 0.91394 0.90939 0.88620 0.79155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.19 36.01 0.37 -0.43 16 2 C 0.07 0.81 6.86 -82.45 -0.57 0.24 16 3 C -0.06 -0.77 9.48 -38.78 -0.37 -1.14 16 4 C -0.12 -1.58 5.57 -104.58 -0.58 -2.16 16 5 C 0.56 8.75 7.50 -12.20 -0.09 8.66 16 6 O -0.53 -9.84 16.29 5.35 0.09 -9.76 16 7 N -0.59 -8.42 2.97 -173.78 -0.52 -8.93 16 8 C 0.11 1.68 6.43 -3.71 -0.02 1.66 16 9 C -0.14 -2.45 4.99 -26.61 -0.13 -2.59 16 10 C -0.08 -1.29 1.90 -90.58 -0.17 -1.47 16 11 C 0.16 2.87 2.93 -66.96 -0.20 2.68 16 12 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 13 C -0.13 -1.89 6.29 -24.90 -0.16 -2.05 16 14 C -0.14 -2.25 6.93 -24.58 -0.17 -2.42 16 15 C 0.12 2.36 6.02 -2.53 -0.02 2.35 16 16 N -0.60 -12.81 1.35 -162.58 -0.22 -13.03 16 17 C -0.26 -6.67 8.72 -15.06 -0.13 -6.80 16 18 H 0.08 2.23 5.56 -52.49 -0.29 1.93 16 19 C 0.05 1.40 5.50 -17.43 -0.10 1.30 16 20 N -0.90 -26.33 13.97 55.49 0.78 -25.55 16 21 Si 0.89 21.57 25.34 -169.99 -4.31 17.26 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.26 -5.88 5.36 56.52 0.30 -5.58 16 25 C -0.12 -1.73 4.92 -26.62 -0.13 -1.87 16 26 C 0.07 0.87 5.01 -3.71 -0.02 0.86 16 27 C 0.04 0.54 8.82 -16.95 -0.15 0.39 16 28 N -0.24 -3.28 11.49 30.46 0.35 -2.93 16 29 N -0.23 -3.20 11.40 33.58 0.38 -2.82 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.16 1.82 8.05 -52.48 -0.42 1.40 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.46 7.02 -51.93 -0.36 1.09 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.12 2.49 4.25 -51.93 -0.22 2.26 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.87 6.18 -51.93 -0.32 0.55 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.12 7.07 -51.93 -0.37 0.75 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.76 4.77 -51.93 -0.25 0.51 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 1.59 7.22 -51.93 -0.37 1.21 16 47 H 0.07 0.89 6.41 -51.93 -0.33 0.56 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 1.07 3.46 -52.84 -0.18 0.89 16 50 H 0.19 1.82 5.36 -52.49 -0.28 1.53 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -31.48 373.62 -7.74 -39.23 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.29 Total: 3.69 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.63 Total: -2.79 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.77 Total: -53.26 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.31 Total: 17.26 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.48 -7.74 -39.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004419364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.934 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds