Wall clock time and date at job start Wed Apr 1 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38554 * 120.01745 * 2 1 4 4 C 1.40068 * 117.82067 * 180.26259 * 3 2 1 5 5 C 1.48135 * 121.15042 * 179.73831 * 4 3 2 6 6 O 1.21520 * 119.99917 * 32.25614 * 5 4 3 7 7 N 1.34770 * 120.00382 * 212.25787 * 5 4 3 8 8 C 1.46928 * 120.63390 * 177.45002 * 7 5 4 9 9 C 1.53190 * 108.77486 * 233.58626 * 8 7 5 10 10 C 1.53040 * 109.31263 * 305.36105 * 9 8 7 11 11 C 1.53001 * 109.46042 * 181.38768 * 10 9 8 12 12 H 1.09000 * 109.99765 * 52.33786 * 11 10 9 13 13 C 1.54313 * 109.77267 * 173.49134 * 11 10 9 14 14 C 1.55157 * 102.86317 * 141.88905 * 13 11 10 15 15 C 1.54919 * 101.57711 * 324.30315 * 14 13 11 16 16 N 1.47019 * 109.88226 * 291.24025 * 11 10 9 17 17 C 1.36942 * 125.64553 * 61.68207 * 16 11 10 18 18 H 1.08000 * 119.99891 * 298.70314 * 17 16 11 19 19 C 1.38811 * 119.99859 * 118.98175 * 17 16 11 20 20 N 1.31624 * 119.99566 * 184.27191 * 19 17 16 21 21 Si 1.86800 * 120.00251 * 4.27266 * 19 17 16 22 22 H 1.48493 * 109.47063 * 94.51740 * 21 19 17 23 23 H 1.48497 * 109.46881 * 214.51929 * 21 19 17 24 24 H 1.48501 * 109.47002 * 334.51907 * 21 19 17 25 25 C 1.53038 * 109.53594 * 61.36538 * 10 9 8 26 26 C 1.46930 * 120.62992 * 357.42483 * 7 5 4 27 27 C 1.39771 * 117.70613 * 359.46764 * 4 3 2 28 28 N 1.31895 * 119.65499 * 0.27345 * 27 4 3 29 29 N 1.28275 * 122.32911 * 0.02562 * 28 27 4 30 30 H 1.08996 * 109.47064 * 270.28373 * 1 2 3 31 31 H 1.09001 * 109.46997 * 30.27892 * 1 2 3 32 32 H 1.08997 * 109.47107 * 150.28275 * 1 2 3 33 33 H 1.08004 * 121.09054 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.58956 * 113.79200 * 8 7 5 35 35 H 1.09000 * 109.58501 * 353.37059 * 8 7 5 36 36 H 1.09002 * 109.49458 * 185.41143 * 9 8 7 37 37 H 1.08994 * 109.52671 * 65.33142 * 9 8 7 38 38 H 1.09001 * 109.46019 * 301.36055 * 10 9 8 39 39 H 1.08997 * 110.92687 * 23.47121 * 13 11 10 40 40 H 1.09004 * 110.59075 * 260.14181 * 13 11 10 41 41 H 1.08997 * 111.00279 * 206.22982 * 14 13 11 42 42 H 1.08997 * 111.04371 * 82.38637 * 14 13 11 43 43 H 1.09001 * 110.36290 * 278.17068 * 15 14 13 44 44 H 1.08995 * 110.45469 * 155.89751 * 15 14 13 45 45 H 0.97001 * 119.99917 * 180.02562 * 20 19 17 46 46 H 1.09001 * 109.49325 * 58.58925 * 25 10 9 47 47 H 1.09001 * 109.49175 * 178.68145 * 25 10 9 48 48 H 1.09001 * 109.58698 * 246.19992 * 26 7 5 49 49 H 1.08996 * 109.58390 * 6.62615 * 26 7 5 50 50 H 1.07993 * 120.17124 * 180.29395 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 -0.0057 5 6 4.4141 2.3835 -0.0119 6 8 4.0069 3.3815 0.5492 7 7 5.6064 2.4025 -0.6398 8 6 6.3999 3.6374 -0.7024 9 6 6.7457 3.9276 -2.1663 10 6 7.4365 2.7052 -2.7751 11 6 7.8144 3.0039 -4.2273 12 1 8.3803 3.9339 -4.2815 13 6 8.6540 1.8416 -4.7978 14 6 8.1407 1.7288 -6.2577 15 6 6.6376 2.0619 -6.0854 16 7 6.5995 3.1091 -5.0486 17 6 5.6009 4.0312 -4.8818 18 1 5.0404 4.0592 -3.9590 19 6 5.3051 4.9260 -5.9009 20 7 4.4037 5.8660 -5.7103 21 14 6.1864 4.7961 -7.5429 22 1 5.3673 3.9882 -8.4817 23 1 6.3877 6.1556 -8.1054 24 1 7.5047 4.1414 -7.3467 25 6 6.4865 1.5061 -2.7317 26 6 6.1377 1.1884 -1.2743 27 6 4.2017 -0.1154 0.0005 28 7 3.4484 -1.1980 0.0059 29 7 2.1668 -1.1419 0.0052 30 1 -0.3633 0.0051 1.0276 31 1 -0.3633 0.8875 -0.5182 32 1 -0.3633 -0.8925 -0.5094 33 1 1.6783 2.1453 0.0004 34 1 7.3178 3.5116 -0.1281 35 1 5.8208 4.4650 -0.2928 36 1 7.4143 4.7870 -2.2187 37 1 5.8323 4.1430 -2.7206 38 1 8.3369 2.4756 -2.2054 39 1 8.4642 0.9187 -4.2499 40 1 9.7151 2.0905 -4.7803 41 1 8.2753 0.7179 -6.6421 42 1 8.6310 2.4583 -6.9024 43 1 6.0892 1.1800 -5.7542 44 1 6.2212 2.4379 -7.0199 45 1 4.1967 6.4910 -6.4226 46 1 5.5752 1.7440 -3.2804 47 1 6.9706 0.6419 -3.1866 48 1 7.0343 0.8628 -0.7467 49 1 5.3856 0.4002 -1.2419 50 1 5.2781 -0.2031 0.0013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004419364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:14 Heat of formation + Delta-G solvation = 49.750071 kcal Electronic energy + Delta-G solvation = -31720.563655 eV Core-core repulsion = 27748.904340 eV Total energy + Delta-G solvation = -3971.659314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.59834 -41.12932 -39.93668 -37.85618 -35.29135 -34.82904 -34.65358 -33.66377 -32.05178 -31.58995 -29.64360 -29.29961 -26.81235 -26.32793 -25.64451 -24.32218 -24.15981 -22.47308 -21.72868 -20.91200 -20.05350 -19.41629 -18.86185 -18.04223 -17.79833 -17.45834 -17.17421 -16.62963 -16.29136 -15.90731 -15.59495 -15.42109 -15.07009 -14.81501 -14.73994 -14.58524 -14.51041 -14.23922 -14.06356 -13.91230 -13.75878 -13.30650 -13.20071 -13.10752 -12.93254 -12.67690 -12.58536 -12.40512 -12.10250 -12.00525 -11.83273 -11.75171 -11.67291 -11.53661 -11.36042 -11.21411 -11.07774 -10.91337 -10.81379 -10.61000 -10.51910 -9.73014 -8.37662 -7.89123 -5.90484 -0.79641 -0.31255 1.31015 1.37660 1.40729 1.51043 1.77182 2.37605 2.42134 2.85138 3.03871 3.10190 3.24745 3.36921 3.48665 3.68061 3.81707 3.94153 4.02027 4.05706 4.15025 4.19229 4.26778 4.32207 4.33870 4.45689 4.47984 4.57539 4.64384 4.71243 4.72978 4.78655 4.82116 4.85376 4.89236 4.94701 4.98910 5.05897 5.10954 5.15946 5.21933 5.30394 5.40001 5.42509 5.49947 5.51621 5.66499 5.79386 6.03893 6.18920 6.47688 6.83351 7.05246 7.47322 7.54429 8.37695 8.99370 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012115 B = 0.003572 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.720473 B = 7836.961787 C = 8214.069211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.073 3.927 3 C -0.070 4.070 4 C -0.130 4.130 5 C 0.556 3.444 6 O -0.571 6.571 7 N -0.587 5.587 8 C 0.120 3.880 9 C -0.140 4.140 10 C -0.078 4.078 11 C 0.151 3.849 12 H 0.019 0.981 13 C -0.114 4.114 14 C -0.131 4.131 15 C 0.111 3.889 16 N -0.612 5.612 17 C -0.230 4.230 18 H 0.046 0.954 19 C -0.011 4.011 20 N -0.953 5.953 21 Si 0.948 3.052 22 H -0.290 1.290 23 H -0.315 1.315 24 H -0.234 1.234 25 C -0.113 4.113 26 C 0.074 3.926 27 C 0.054 3.946 28 N -0.256 5.256 29 N -0.254 5.254 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.031 0.969 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.038 0.962 47 H 0.094 0.906 48 H 0.118 0.882 49 H 0.105 0.895 50 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 -14.517 10.210 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.072 4.072 3 C -0.100 4.100 4 C -0.144 4.144 5 C 0.344 3.656 6 O -0.451 6.451 7 N -0.317 5.317 8 C -0.001 4.001 9 C -0.177 4.177 10 C -0.098 4.098 11 C 0.046 3.954 12 H 0.037 0.963 13 C -0.152 4.152 14 C -0.169 4.169 15 C -0.013 4.013 16 N -0.339 5.339 17 C -0.360 4.360 18 H 0.063 0.937 19 C -0.209 4.209 20 N -0.595 5.595 21 Si 0.777 3.223 22 H -0.217 1.217 23 H -0.244 1.244 24 H -0.157 1.157 25 C -0.151 4.151 26 C -0.047 4.047 27 C -0.110 4.110 28 N -0.095 5.095 29 N -0.098 5.098 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.182 0.818 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.057 0.943 47 H 0.112 0.888 48 H 0.136 0.864 49 H 0.123 0.877 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 4.567 -15.478 10.440 19.220 hybrid contribution -0.317 2.700 -1.286 3.008 sum 4.250 -12.778 9.154 16.283 Atomic orbital electron populations 1.20872 0.84256 1.05452 1.05279 1.23385 1.01009 0.88773 0.94030 1.22695 0.93095 1.01475 0.92705 1.21200 0.95654 0.95314 1.02265 1.18227 0.81282 0.86967 0.79156 1.90766 1.71577 1.35977 1.46816 1.48077 1.18162 1.13116 1.52371 1.21694 0.95332 0.85627 0.97484 1.22206 1.02352 0.98697 0.94480 1.21400 0.97929 0.93894 0.96564 1.21324 0.87137 0.96014 0.90931 0.96338 1.22626 0.99164 0.98483 0.94891 1.22765 0.94584 1.01742 0.97798 1.22001 0.96124 0.91684 0.91460 1.44519 1.19878 1.33707 1.35782 1.18266 1.09825 1.07092 1.00826 0.93690 1.26707 0.97291 0.94140 1.02753 1.69949 1.36563 1.18826 1.34199 0.85700 0.81404 0.75226 0.79973 1.21742 1.24362 1.15714 1.21790 0.99837 0.98741 0.94769 1.22990 1.01379 0.86005 0.94286 1.25390 1.04283 0.87587 0.93739 1.73020 0.99538 1.27294 1.09643 1.72735 1.02269 1.25870 1.08880 0.87749 0.88539 0.89006 0.81816 0.88322 0.91803 0.92176 0.92054 0.88877 0.88775 0.89723 0.88750 0.92836 0.95063 0.97010 0.93083 0.94349 0.88760 0.86396 0.87742 0.76314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.19 71.24 0.73 -0.72 16 2 C 0.07 1.64 6.86 42.63 0.29 1.94 16 3 C -0.07 -1.74 9.48 22.79 0.22 -1.53 16 4 C -0.13 -3.46 5.57 -19.83 -0.11 -3.57 16 5 C 0.56 17.44 7.50 86.87 0.65 18.09 16 6 O -0.57 -22.09 16.29 -3.78 -0.06 -22.15 16 7 N -0.59 -16.10 2.97 -822.00 -2.44 -18.54 16 8 C 0.12 3.49 6.43 86.36 0.55 4.04 16 9 C -0.14 -4.78 4.99 30.67 0.15 -4.63 16 10 C -0.08 -2.17 1.90 -10.77 -0.02 -2.19 16 11 C 0.15 5.05 2.93 45.34 0.13 5.19 16 12 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 13 C -0.11 -2.77 6.29 31.78 0.20 -2.57 16 14 C -0.13 -3.70 6.93 31.99 0.22 -3.48 16 15 C 0.11 4.19 6.02 86.86 0.52 4.72 16 16 N -0.61 -26.07 1.35 -668.30 -0.90 -26.98 16 17 C -0.23 -12.35 8.72 84.03 0.73 -11.62 16 18 H 0.05 2.75 5.56 -2.91 -0.02 2.74 16 19 C -0.01 -0.66 5.50 84.86 0.47 -0.19 16 20 N -0.95 -59.43 13.97 21.65 0.30 -59.13 16 21 Si 0.95 46.00 25.34 68.60 1.74 47.74 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.31 -15.75 7.11 99.48 0.71 -15.05 16 24 H -0.23 -10.32 5.36 99.48 0.53 -9.79 16 25 C -0.11 -2.93 4.92 30.67 0.15 -2.78 16 26 C 0.07 1.50 5.01 86.36 0.43 1.94 16 27 C 0.05 1.21 8.82 85.05 0.75 1.96 16 28 N -0.26 -6.58 11.49 -57.56 -0.66 -7.24 16 29 N -0.25 -6.66 11.40 -47.68 -0.54 -7.20 16 30 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.16 3.86 8.05 -2.91 -0.02 3.83 16 34 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 2.18 7.02 -2.39 -0.02 2.16 16 36 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.83 4.25 -2.39 -0.01 2.82 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 1.82 6.18 -2.39 -0.01 1.80 16 40 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 1.64 7.07 -2.39 -0.02 1.63 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.01 0.50 4.77 -2.39 -0.01 0.48 16 45 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.04 1.38 7.22 -2.39 -0.02 1.37 16 47 H 0.09 1.97 6.41 -2.39 -0.02 1.95 16 48 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.11 1.99 3.46 -3.25 -0.01 1.98 16 50 H 0.22 3.36 5.36 -2.91 -0.02 3.35 16 Total: -1.00 -75.85 373.62 4.29 -71.56 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.79 Total: 17.35 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 6.07 Total: 4.58 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -4.25 Total: -119.09 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.74 Total: 47.74 kcal Total: -75.85 4.29 -71.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004419364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.307 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds