Wall clock time and date at job start Wed Apr 1 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99522 * 2 1 4 4 H 1.48502 * 109.47174 * 239.99808 * 3 2 1 5 5 H 1.48498 * 109.47633 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47046 * 119.99958 * 3 2 1 7 7 C 1.38803 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00258 * 168.88209 * 7 2 1 9 9 N 1.36943 * 120.00114 * 348.88351 * 7 2 1 10 10 C 1.46848 * 120.38113 * 327.55509 * 9 7 2 11 11 C 1.53352 * 108.81290 * 236.88541 * 10 9 7 12 12 C 1.53184 * 108.76815 * 308.68676 * 11 10 9 13 13 C 1.52845 * 117.65559 * 269.97417 * 12 11 10 14 14 C 1.52817 * 117.71354 * 201.11748 * 12 11 10 15 15 H 1.08996 * 117.49671 * 215.12252 * 14 12 11 16 16 N 1.46498 * 117.49883 * 0.13509 * 14 12 11 17 17 C 1.34783 * 119.99493 * 205.00045 * 16 14 12 18 18 O 1.21628 * 120.00135 * 4.70087 * 17 16 14 19 19 C 1.47165 * 119.99615 * 184.70533 * 17 16 14 20 20 C 1.38402 * 126.88417 * 354.50674 * 19 17 16 21 21 C 1.39683 * 105.35893 * 179.86514 * 20 19 17 22 22 N 1.30855 * 107.85701 * 0.40709 * 21 20 19 23 23 N 1.28440 * 110.93445 * 359.73862 * 22 21 20 24 24 C 1.46501 * 125.19451 * 179.97438 * 23 22 21 25 25 C 1.53778 * 113.61148 * 42.79175 * 24 23 22 26 26 C 1.53958 * 87.01692 * 220.04425 * 25 24 23 27 27 C 1.53775 * 87.11012 * 25.36544 * 26 25 24 28 28 C 1.53182 * 115.07484 * 55.44279 * 12 11 10 29 29 C 1.46840 * 120.38497 * 147.53498 * 9 7 2 30 30 H 0.96993 * 120.00154 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.57846 * 117.08873 * 10 9 7 32 32 H 1.08998 * 109.69296 * 356.75180 * 10 9 7 33 33 H 1.09001 * 109.58574 * 188.90329 * 11 10 9 34 34 H 1.08993 * 109.58715 * 68.47287 * 11 10 9 35 35 H 1.09006 * 117.50510 * 144.81297 * 13 12 11 36 36 H 1.09000 * 117.50721 * 359.75919 * 13 12 11 37 37 H 0.96997 * 120.00092 * 25.00770 * 16 14 12 38 38 H 1.08005 * 127.32463 * 359.97438 * 20 19 17 39 39 H 1.08004 * 126.06609 * 180.14977 * 21 20 19 40 40 H 1.09003 * 112.84514 * 173.98487 * 24 23 22 41 41 H 1.08998 * 113.61215 * 334.56646 * 25 24 23 42 42 H 1.09003 * 113.61624 * 105.46968 * 25 24 23 43 43 H 1.08993 * 113.53591 * 270.80737 * 26 25 24 44 44 H 1.09001 * 113.73773 * 139.94144 * 26 25 24 45 45 H 1.09008 * 113.61005 * 220.08780 * 27 26 25 46 46 H 1.09001 * 113.69453 * 89.19812 * 27 26 25 47 47 H 1.08996 * 109.58676 * 64.35539 * 28 12 11 48 48 H 1.09008 * 109.58567 * 184.77623 * 28 12 11 49 49 H 1.08996 * 109.57998 * 242.92247 * 29 9 7 50 50 H 1.09002 * 109.58126 * 3.32105 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0751 -1.2107 -0.1809 9 7 1.3449 -2.3770 0.2276 10 6 0.1804 -2.4096 1.1215 11 6 0.4412 -3.4296 2.2365 12 6 0.8720 -4.7551 1.6009 13 6 -0.2226 -5.7625 1.2500 14 6 0.7120 -6.0272 2.4325 15 1 1.4669 -6.8044 2.3137 16 7 0.1541 -5.8887 3.7800 17 6 0.4367 -6.8082 4.7241 18 8 1.2222 -7.7052 4.4836 19 6 -0.2051 -6.7268 6.0459 20 6 -1.0319 -5.7172 6.5071 21 6 -1.3861 -6.0930 7.8050 22 7 -0.7959 -7.2308 8.0685 23 7 -0.0994 -7.6295 7.0657 24 6 0.6887 -8.8637 7.0223 25 6 -0.0335 -10.0774 7.6308 26 6 1.3219 -10.4755 8.2429 27 6 1.7033 -8.9875 8.1712 28 6 2.0808 -4.6634 0.6645 29 6 1.7874 -3.6188 -0.4192 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7050 -2.7033 0.5575 32 1 0.0247 -1.4230 1.5581 33 1 -0.4708 -3.5807 2.8141 34 1 1.2332 -3.0629 2.8893 35 1 -0.0827 -6.3659 0.3530 36 1 -1.2526 -5.4855 1.4747 37 1 -0.4188 -5.1355 3.9927 38 1 -1.3395 -4.8287 5.9758 39 1 -2.0292 -5.5403 8.4739 40 1 1.1167 -9.0582 6.0389 41 1 -0.7862 -9.8107 8.3727 42 1 -0.4023 -10.7840 6.8873 43 1 1.9226 -11.1121 7.5935 44 1 1.2481 -10.8587 9.2607 45 1 2.7348 -8.8155 7.8633 46 1 1.4270 -8.4211 9.0606 47 1 2.9612 -4.3634 1.2326 48 1 2.2568 -5.6333 0.1990 49 1 1.0017 -3.9873 -1.0787 50 1 2.6919 -3.4277 -0.9967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016624517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:37 Heat of formation + Delta-G solvation = 110.737936 kcal Electronic energy + Delta-G solvation = -30170.499288 eV Core-core repulsion = 26201.484606 eV Total energy + Delta-G solvation = -3969.014682 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.78511 -39.88323 -38.77714 -38.33929 -35.53040 -33.45444 -31.97140 -31.68454 -30.66423 -30.12885 -28.23122 -26.11348 -25.83365 -24.38020 -23.97866 -22.48470 -22.26379 -21.51935 -20.77118 -20.32385 -19.46518 -18.44242 -18.09788 -16.60446 -16.57620 -16.13604 -15.89201 -15.76144 -14.96980 -14.72300 -14.56594 -14.32181 -14.16767 -13.66463 -13.59932 -13.42087 -13.09789 -13.02342 -12.92561 -12.66715 -12.60897 -12.31989 -11.76068 -11.60086 -11.55049 -11.40125 -11.18062 -11.00229 -10.96480 -10.85736 -10.75458 -10.53531 -10.32097 -10.12636 -9.98726 -9.76019 -9.60626 -9.40923 -9.37914 -9.19188 -8.53055 -8.48210 -6.59753 -5.79867 -3.28960 1.06711 2.15059 2.42476 3.01820 3.04196 3.36857 3.42242 3.43454 3.97537 4.11151 4.14623 4.37776 4.38407 4.45332 4.47607 4.62602 4.89178 4.94324 5.08553 5.10291 5.19507 5.27715 5.34287 5.39641 5.39671 5.48341 5.48735 5.51274 5.52122 5.59943 5.61497 5.79401 5.96251 6.01155 6.05751 6.08560 6.26237 6.30736 6.42257 6.49616 6.54618 6.57148 6.62249 6.68624 6.81481 6.98668 7.31337 7.35399 7.66803 7.77519 7.87922 8.00629 8.48164 9.21816 9.83175 10.41266 11.27462 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.002263 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.118092 B =12372.532380 C =12995.379779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.590 5.590 10 C 0.174 3.826 11 C -0.106 4.106 12 C -0.094 4.094 13 C -0.180 4.180 14 C 0.067 3.933 15 H 0.134 0.866 16 N -0.676 5.676 17 C 0.595 3.405 18 O -0.546 6.546 19 C -0.037 4.037 20 C -0.189 4.189 21 C -0.005 4.005 22 N -0.276 5.276 23 N -0.244 5.244 24 C 0.109 3.891 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.098 4.098 29 C 0.149 3.851 30 H 0.254 0.746 31 H 0.018 0.982 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.406 0.594 38 H 0.161 0.839 39 H 0.187 0.813 40 H 0.153 0.847 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.020 0.980 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 -17.721 14.460 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.146 4.146 12 C -0.095 4.095 13 C -0.219 4.219 14 C -0.038 4.038 15 H 0.151 0.849 16 N -0.325 5.325 17 C 0.381 3.619 18 O -0.425 6.425 19 C -0.166 4.166 20 C -0.218 4.218 21 C -0.180 4.180 22 N -0.109 5.109 23 N -0.031 5.031 24 C 0.009 3.991 25 C -0.179 4.179 26 C -0.174 4.174 27 C -0.179 4.179 28 C -0.138 4.138 29 C 0.023 3.977 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.242 0.758 38 H 0.178 0.822 39 H 0.204 0.796 40 H 0.171 0.829 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.038 0.962 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.562 -19.137 15.086 24.418 hybrid contribution -0.148 1.974 -0.517 2.046 sum -1.710 -17.163 14.568 22.577 Atomic orbital electron populations 1.69952 1.05251 1.25591 1.54082 1.25173 0.95398 0.98415 1.00430 0.86353 0.78863 0.83253 0.78153 1.20845 1.21613 1.20995 1.19140 0.90916 0.84058 1.44208 0.91982 1.43922 1.33639 1.03711 1.49909 1.20758 0.88433 0.97380 0.88595 1.21847 0.98874 0.94208 0.99631 1.21978 0.97884 0.90685 0.98965 1.23557 0.96479 1.03396 0.98421 1.21939 1.00918 1.02510 0.78450 0.84865 1.45059 1.50746 1.26475 1.10211 1.16856 0.80784 0.82024 0.82268 1.90709 1.35641 1.35319 1.80842 1.21419 1.06886 0.95217 0.93064 1.22321 1.01847 1.00444 0.97151 1.23568 1.03443 0.94255 0.96734 1.73068 1.08943 1.15294 1.13571 1.45794 1.32908 1.17150 1.07284 1.23889 0.92416 0.79575 1.03254 1.23379 0.98023 0.95724 1.00768 1.22715 0.96579 0.95971 1.02131 1.23343 0.99173 0.97254 0.98148 1.21703 0.95375 0.99335 0.97363 1.20866 0.97579 0.87039 0.92256 0.93549 0.96400 0.89044 0.93807 0.92003 0.88281 0.88754 0.75757 0.82153 0.79646 0.82934 0.88413 0.90393 0.89370 0.90182 0.90238 0.88771 0.91807 0.92842 0.96232 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.58 11.07 55.49 0.61 -24.97 16 2 C 0.00 0.12 5.03 -17.43 -0.09 0.03 16 3 Si 0.90 21.34 29.57 -169.99 -5.03 16.32 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.80 9.54 -15.06 -0.14 -6.94 16 8 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 9 N -0.59 -14.31 2.93 -172.26 -0.50 -14.82 16 10 C 0.17 3.95 5.34 -3.67 -0.02 3.93 16 11 C -0.11 -1.88 5.37 -26.45 -0.14 -2.02 16 12 C -0.09 -1.49 1.94 -154.49 -0.30 -1.78 16 13 C -0.18 -2.49 9.86 -26.80 -0.26 -2.75 16 14 C 0.07 0.94 6.15 -68.01 -0.42 0.52 16 15 H 0.13 1.95 7.39 -51.93 -0.38 1.56 16 16 N -0.68 -8.74 5.33 -55.04 -0.29 -9.03 16 17 C 0.59 8.28 7.79 -12.63 -0.10 8.18 16 18 O -0.55 -8.73 14.06 5.25 0.07 -8.65 16 19 C -0.04 -0.48 6.96 -82.06 -0.57 -1.05 16 20 C -0.19 -2.01 10.50 -38.98 -0.41 -2.42 16 21 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 22 N -0.28 -3.28 11.14 30.59 0.34 -2.94 16 23 N -0.24 -2.99 3.46 -49.91 -0.17 -3.16 16 24 C 0.11 1.15 4.42 -67.12 -0.30 0.85 16 25 C -0.14 -1.17 7.76 -25.83 -0.20 -1.37 16 26 C -0.14 -0.92 8.09 -25.83 -0.21 -1.13 16 27 C -0.14 -1.23 7.80 -25.92 -0.20 -1.44 16 28 C -0.10 -1.65 5.83 -26.46 -0.15 -1.81 16 29 C 0.15 3.03 6.52 -3.68 -0.02 3.01 16 30 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 2.34 5.99 -51.93 -0.31 2.03 16 33 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.41 4.63 6.15 -40.82 -0.25 4.38 16 38 H 0.16 1.33 7.59 -52.48 -0.40 0.93 16 39 H 0.19 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.15 1.80 5.68 -51.93 -0.30 1.50 16 41 H 0.10 0.87 7.75 -51.93 -0.40 0.47 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 46 H 0.09 0.88 8.04 -51.93 -0.42 0.47 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.77 8.10 -51.92 -0.42 0.35 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 LS Contribution 396.81 15.07 5.98 5.98 Total: -1.00 -30.95 396.81 -10.58 -41.53 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.84 Total: 6.17 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.75 Total: -6.43 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.02 Total: -54.91 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.65 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.95 -10.58 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016624517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.266 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds