Wall clock time and date at job start Wed Apr 1 2020 02:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99522 * 2 1 4 4 H 1.48502 * 109.47174 * 239.99808 * 3 2 1 5 5 H 1.48498 * 109.47633 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47046 * 119.99958 * 3 2 1 7 7 C 1.38803 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00258 * 168.88209 * 7 2 1 9 9 N 1.36943 * 120.00114 * 348.88351 * 7 2 1 10 10 C 1.46848 * 120.38113 * 327.55509 * 9 7 2 11 11 C 1.53352 * 108.81290 * 236.88541 * 10 9 7 12 12 C 1.53184 * 108.76815 * 308.68676 * 11 10 9 13 13 C 1.52845 * 117.65559 * 269.97417 * 12 11 10 14 14 C 1.52817 * 117.71354 * 201.11748 * 12 11 10 15 15 H 1.08996 * 117.49671 * 215.12252 * 14 12 11 16 16 N 1.46498 * 117.49883 * 0.13509 * 14 12 11 17 17 C 1.34783 * 119.99493 * 205.00045 * 16 14 12 18 18 O 1.21628 * 120.00135 * 4.70087 * 17 16 14 19 19 C 1.47165 * 119.99615 * 184.70533 * 17 16 14 20 20 C 1.38402 * 126.88417 * 354.50674 * 19 17 16 21 21 C 1.39683 * 105.35893 * 179.86514 * 20 19 17 22 22 N 1.30855 * 107.85701 * 0.40709 * 21 20 19 23 23 N 1.28440 * 110.93445 * 359.73862 * 22 21 20 24 24 C 1.46501 * 125.19451 * 179.97438 * 23 22 21 25 25 C 1.53778 * 113.61148 * 42.79175 * 24 23 22 26 26 C 1.53958 * 87.01692 * 220.04425 * 25 24 23 27 27 C 1.53775 * 87.11012 * 25.36544 * 26 25 24 28 28 C 1.53182 * 115.07484 * 55.44279 * 12 11 10 29 29 C 1.46840 * 120.38497 * 147.53498 * 9 7 2 30 30 H 0.96993 * 120.00154 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.57846 * 117.08873 * 10 9 7 32 32 H 1.08998 * 109.69296 * 356.75180 * 10 9 7 33 33 H 1.09001 * 109.58574 * 188.90329 * 11 10 9 34 34 H 1.08993 * 109.58715 * 68.47287 * 11 10 9 35 35 H 1.09006 * 117.50510 * 144.81297 * 13 12 11 36 36 H 1.09000 * 117.50721 * 359.75919 * 13 12 11 37 37 H 0.96997 * 120.00092 * 25.00770 * 16 14 12 38 38 H 1.08005 * 127.32463 * 359.97438 * 20 19 17 39 39 H 1.08004 * 126.06609 * 180.14977 * 21 20 19 40 40 H 1.09003 * 112.84514 * 173.98487 * 24 23 22 41 41 H 1.08998 * 113.61215 * 334.56646 * 25 24 23 42 42 H 1.09003 * 113.61624 * 105.46968 * 25 24 23 43 43 H 1.08993 * 113.53591 * 270.80737 * 26 25 24 44 44 H 1.09001 * 113.73773 * 139.94144 * 26 25 24 45 45 H 1.09008 * 113.61005 * 220.08780 * 27 26 25 46 46 H 1.09001 * 113.69453 * 89.19812 * 27 26 25 47 47 H 1.08996 * 109.58676 * 64.35539 * 28 12 11 48 48 H 1.09008 * 109.58567 * 184.77623 * 28 12 11 49 49 H 1.08996 * 109.57998 * 242.92247 * 29 9 7 50 50 H 1.09002 * 109.58126 * 3.32105 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0751 -1.2107 -0.1809 9 7 1.3449 -2.3770 0.2276 10 6 0.1804 -2.4096 1.1215 11 6 0.4412 -3.4296 2.2365 12 6 0.8720 -4.7551 1.6009 13 6 -0.2226 -5.7625 1.2500 14 6 0.7120 -6.0272 2.4325 15 1 1.4669 -6.8044 2.3137 16 7 0.1541 -5.8887 3.7800 17 6 0.4367 -6.8082 4.7241 18 8 1.2222 -7.7052 4.4836 19 6 -0.2051 -6.7268 6.0459 20 6 -1.0319 -5.7172 6.5071 21 6 -1.3861 -6.0930 7.8050 22 7 -0.7959 -7.2308 8.0685 23 7 -0.0994 -7.6295 7.0657 24 6 0.6887 -8.8637 7.0223 25 6 -0.0335 -10.0774 7.6308 26 6 1.3219 -10.4755 8.2429 27 6 1.7033 -8.9875 8.1712 28 6 2.0808 -4.6634 0.6645 29 6 1.7874 -3.6188 -0.4192 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7050 -2.7033 0.5575 32 1 0.0247 -1.4230 1.5581 33 1 -0.4708 -3.5807 2.8141 34 1 1.2332 -3.0629 2.8893 35 1 -0.0827 -6.3659 0.3530 36 1 -1.2526 -5.4855 1.4747 37 1 -0.4188 -5.1355 3.9927 38 1 -1.3395 -4.8287 5.9758 39 1 -2.0292 -5.5403 8.4739 40 1 1.1167 -9.0582 6.0389 41 1 -0.7862 -9.8107 8.3727 42 1 -0.4023 -10.7840 6.8873 43 1 1.9226 -11.1121 7.5935 44 1 1.2481 -10.8587 9.2607 45 1 2.7348 -8.8155 7.8633 46 1 1.4270 -8.4211 9.0606 47 1 2.9612 -4.3634 1.2326 48 1 2.2568 -5.6333 0.1990 49 1 1.0017 -3.9873 -1.0787 50 1 2.6919 -3.4277 -0.9967 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016624517.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:36 Heat of formation + Delta-G solvation = 93.660256 kcal Electronic energy + Delta-G solvation = -30171.239832 eV Core-core repulsion = 26201.484606 eV Total energy + Delta-G solvation = -3969.755226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.62482 -41.04714 -39.62314 -39.45606 -37.12675 -34.75327 -33.41526 -32.74185 -31.72756 -31.68695 -29.83983 -26.77757 -26.56941 -26.22665 -24.97223 -24.01351 -23.19728 -22.81747 -21.99271 -21.33648 -20.28474 -19.79470 -19.21592 -18.26610 -17.61057 -17.02977 -16.99673 -16.76627 -16.48350 -15.88732 -15.66626 -15.57324 -15.33742 -15.07849 -14.93215 -14.68167 -14.41305 -14.17185 -13.88342 -13.72229 -13.61612 -13.32587 -13.28928 -12.99713 -12.91836 -12.58271 -12.56528 -12.33610 -12.22855 -11.99461 -11.93983 -11.78390 -11.67875 -11.65543 -11.39701 -11.23829 -11.08415 -10.69374 -10.48755 -10.30442 -9.99837 -9.69772 -8.54153 -7.83589 -5.35723 0.13882 1.29671 1.47943 1.49246 1.55945 1.60593 2.03611 2.05337 2.52181 2.94560 3.28909 3.31621 3.42635 3.44959 3.65373 3.70517 3.74252 3.81763 3.87075 3.93715 3.99208 4.10652 4.14619 4.47851 4.53360 4.55575 4.63033 4.66397 4.72103 4.73607 4.80790 4.85369 4.87921 4.89561 4.93463 4.95532 4.97227 5.03145 5.10643 5.23773 5.30705 5.32149 5.38136 5.42400 5.56961 5.57912 5.67299 5.75287 5.83481 6.30444 6.45962 6.93698 7.07516 7.20272 7.90838 8.42383 9.20357 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018711 B = 0.002263 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.118092 B =12372.532380 C =12995.379779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.264 4.264 8 H 0.060 0.940 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.090 4.090 12 C -0.114 4.114 13 C -0.166 4.166 14 C 0.085 3.915 15 H 0.132 0.868 16 N -0.671 5.671 17 C 0.595 3.405 18 O -0.571 6.571 19 C -0.064 4.064 20 C -0.181 4.181 21 C -0.007 4.007 22 N -0.289 5.289 23 N -0.251 5.251 24 C 0.093 3.907 25 C -0.135 4.135 26 C -0.121 4.121 27 C -0.140 4.140 28 C -0.087 4.087 29 C 0.146 3.854 30 H 0.250 0.750 31 H 0.000 1.000 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.414 0.586 38 H 0.184 0.816 39 H 0.217 0.783 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.083 0.917 49 H 0.019 0.981 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -18.981 15.576 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.394 4.394 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.055 3.945 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.204 4.204 14 C -0.021 4.021 15 H 0.150 0.850 16 N -0.320 5.320 17 C 0.382 3.618 18 O -0.452 6.452 19 C -0.193 4.193 20 C -0.210 4.210 21 C -0.182 4.182 22 N -0.122 5.122 23 N -0.038 5.038 24 C -0.007 4.007 25 C -0.173 4.173 26 C -0.159 4.159 27 C -0.178 4.178 28 C -0.126 4.126 29 C 0.020 3.980 30 H 0.059 0.941 31 H 0.018 0.982 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.252 0.748 38 H 0.201 0.799 39 H 0.234 0.766 40 H 0.156 0.844 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.101 0.899 49 H 0.037 0.963 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.733 -20.417 16.207 26.125 hybrid contribution -0.106 2.349 -0.873 2.508 sum -1.839 -18.068 15.333 23.768 Atomic orbital electron populations 1.70109 1.06464 1.25826 1.55417 1.25870 0.96172 1.01335 1.00860 0.85384 0.77595 0.79447 0.78234 1.20280 1.21893 1.20536 1.19430 0.91147 0.85416 1.43441 0.92222 1.44196 1.33816 1.04288 1.50965 1.20551 0.87484 0.97025 0.89440 1.21564 0.99788 0.93802 0.97799 1.21824 0.98824 0.90528 1.00366 1.23648 0.96259 1.01694 0.98792 1.21768 1.00839 1.00473 0.78996 0.85038 1.44983 1.50612 1.26655 1.09732 1.17033 0.80362 0.81629 0.82737 1.90697 1.36791 1.36322 1.81384 1.21458 1.08305 0.96538 0.92950 1.22682 1.00576 1.00427 0.97314 1.24165 1.03165 0.93792 0.97083 1.73065 1.09270 1.16129 1.13723 1.45983 1.33142 1.17497 1.07227 1.24044 0.93482 0.80072 1.03116 1.23347 0.98559 0.94818 1.00625 1.22709 0.95334 0.94733 1.03143 1.23329 0.98642 0.98739 0.97093 1.21532 0.95409 0.99339 0.96345 1.20987 0.97144 0.86509 0.93331 0.94066 0.98202 0.92545 0.90993 0.93307 0.86848 0.87976 0.74822 0.79917 0.76599 0.84447 0.89017 0.89780 0.88171 0.88687 0.90337 0.89489 0.92881 0.89882 0.96334 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.04 11.07 21.65 0.24 -53.80 16 2 C -0.05 -2.58 5.03 84.86 0.43 -2.15 16 3 Si 0.97 44.46 29.57 68.60 2.03 46.49 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.26 -14.39 9.54 84.03 0.80 -13.59 16 8 H 0.06 3.21 7.85 -2.91 -0.02 3.18 16 9 N -0.61 -29.99 2.93 -698.90 -2.05 -32.04 16 10 C 0.18 8.33 5.34 86.43 0.46 8.79 16 11 C -0.09 -3.12 5.37 30.77 0.17 -2.96 16 12 C -0.11 -3.42 1.94 -52.17 -0.10 -3.52 16 13 C -0.17 -4.13 9.86 30.55 0.30 -3.83 16 14 C 0.08 2.19 6.15 44.94 0.28 2.47 16 15 H 0.13 3.55 7.39 -2.39 -0.02 3.54 16 16 N -0.67 -16.06 5.33 -446.30 -2.38 -18.44 16 17 C 0.60 15.92 7.79 86.59 0.67 16.60 16 18 O -0.57 -17.94 14.06 -4.12 -0.06 -18.00 16 19 C -0.06 -1.56 6.96 40.79 0.28 -1.28 16 20 C -0.18 -3.48 10.50 22.66 0.24 -3.24 16 21 C -0.01 -0.13 12.03 85.19 1.03 0.89 16 22 N -0.29 -6.51 11.14 -57.13 -0.64 -7.14 16 23 N -0.25 -5.95 3.46 -311.81 -1.08 -7.03 16 24 C 0.09 1.92 4.42 45.52 0.20 2.13 16 25 C -0.14 -2.11 7.76 31.18 0.24 -1.87 16 26 C -0.12 -1.45 8.09 31.18 0.25 -1.20 16 27 C -0.14 -2.35 7.80 31.12 0.24 -2.11 16 28 C -0.09 -2.81 5.83 30.77 0.18 -2.63 16 29 C 0.15 5.89 6.52 86.43 0.56 6.45 16 30 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 32 H 0.06 2.98 5.99 -2.39 -0.01 2.97 16 33 H 0.07 2.04 6.75 -2.39 -0.02 2.02 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 35 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.41 8.47 6.15 -92.71 -0.57 7.90 16 38 H 0.18 2.51 7.59 -2.91 -0.02 2.48 16 39 H 0.22 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.14 3.26 5.68 -2.39 -0.01 3.25 16 41 H 0.09 1.55 7.75 -2.39 -0.02 1.53 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 46 H 0.09 1.58 8.04 -2.39 -0.02 1.56 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.08 2.19 8.10 -2.38 -0.02 2.17 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 Total: -1.00 -68.24 396.81 2.68 -65.56 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.38 Total: 25.44 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 6.23 Total: -1.05 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -5.90 Total: -118.45 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.06 Total: -18.00 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.24 2.68 -65.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016624517.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.219 kcal (2) G-P(sol) polarization free energy of solvation -68.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds