Wall clock time and date at job start Wed Apr 1 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48503 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47175 * 299.99805 * 3 2 1 6 6 H 1.48503 * 109.47372 * 60.00226 * 3 2 1 7 7 C 1.38814 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99723 * 190.69746 * 7 2 1 9 9 N 1.36934 * 120.00257 * 10.70837 * 7 2 1 10 10 C 1.46847 * 120.38249 * 212.70242 * 9 7 2 11 11 C 1.53341 * 108.81552 * 236.88148 * 10 9 7 12 12 C 1.53189 * 108.76945 * 308.68887 * 11 10 9 13 13 C 1.52853 * 117.65498 * 269.97522 * 12 11 10 14 14 C 1.52817 * 117.71606 * 201.12080 * 12 11 10 15 15 H 1.09007 * 117.49647 * 0.09955 * 14 12 11 16 16 N 1.46493 * 117.49999 * 215.09882 * 14 12 11 17 17 C 1.34781 * 119.99952 * 154.99522 * 16 14 12 18 18 O 1.21626 * 120.00118 * 4.85359 * 17 16 14 19 19 C 1.47166 * 119.99787 * 184.85228 * 17 16 14 20 20 C 1.38405 * 126.88910 * 5.39330 * 19 17 16 21 21 C 1.39671 * 105.36283 * 180.26600 * 20 19 17 22 22 N 1.30866 * 107.86052 * 359.75542 * 21 20 19 23 23 N 1.28443 * 110.92432 * 359.97438 * 22 21 20 24 24 C 1.46498 * 125.18666 * 180.02562 * 23 22 21 25 25 C 1.53779 * 113.61788 * 55.45498 * 24 23 22 26 26 C 1.53777 * 87.08623 * 219.93371 * 25 24 23 27 27 C 1.53781 * 113.69252 * 317.92029 * 24 23 22 28 28 C 1.53179 * 115.07947 * 55.44252 * 12 11 10 29 29 C 1.46844 * 120.38534 * 32.67975 * 9 7 2 30 30 H 0.96997 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.57755 * 117.07973 * 10 9 7 32 32 H 1.08997 * 109.58047 * 356.68303 * 10 9 7 33 33 H 1.08993 * 109.59167 * 188.90053 * 11 10 9 34 34 H 1.09001 * 109.58807 * 68.46873 * 11 10 9 35 35 H 1.08994 * 117.50604 * 144.81098 * 13 12 11 36 36 H 1.08997 * 117.50372 * 359.75832 * 13 12 11 37 37 H 0.97004 * 120.00175 * 334.98905 * 16 14 12 38 38 H 1.08011 * 127.31543 * 359.97438 * 20 19 17 39 39 H 1.07995 * 126.06891 * 179.72284 * 21 20 19 40 40 H 1.08997 * 112.85170 * 186.65135 * 24 23 22 41 41 H 1.09004 * 113.61592 * 105.38626 * 25 24 23 42 42 H 1.09001 * 113.61711 * 334.48609 * 25 24 23 43 43 H 1.08995 * 113.61489 * 139.97694 * 26 25 24 44 44 H 1.09000 * 113.61484 * 270.88735 * 26 25 24 45 45 H 1.09003 * 113.61384 * 25.44484 * 27 24 23 46 46 H 1.09004 * 113.61550 * 254.54418 * 27 24 23 47 47 H 1.08998 * 109.58762 * 64.34282 * 28 12 11 48 48 H 1.08994 * 109.58893 * 184.77641 * 28 12 11 49 49 H 1.08997 * 109.57894 * 242.92406 * 29 9 7 50 50 H 1.09000 * 109.57644 * 3.32806 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0761 -1.2103 0.1742 9 7 1.3434 -2.3779 -0.2193 10 6 1.7867 -3.6164 0.4333 11 6 2.0764 -4.6673 -0.6451 12 6 0.8650 -4.7633 -1.5779 13 6 -0.2294 -5.7680 -1.2183 14 6 0.7018 -6.0400 -2.4017 15 1 1.4566 -6.8171 -2.2807 16 7 0.1403 -5.9088 -3.7484 17 6 0.4198 -6.8338 -4.6881 18 8 1.0646 -7.8226 -4.3953 19 6 -0.0554 -6.6473 -6.0684 20 6 -0.7050 -5.5377 -6.5806 21 6 -0.9535 -5.8405 -7.9213 22 7 -0.4749 -7.0352 -8.1583 23 7 0.0590 -7.5334 -7.1016 24 6 0.6889 -8.8533 -7.0161 25 6 1.8100 -9.0688 -8.0464 26 6 1.2720 -10.4994 -8.2157 27 6 -0.0898 -9.9583 -7.7491 28 6 0.4334 -3.4412 -2.2198 29 6 0.1764 -2.4146 -1.1099 30 1 -0.4850 0.8400 0.0004 31 1 1.0023 -3.9806 1.0969 32 1 2.6927 -3.4227 1.0074 33 1 2.2530 -5.6345 -0.1748 34 1 2.9555 -4.3709 -1.2174 35 1 -1.2597 -5.4914 -1.4416 36 1 -0.0875 -6.3663 -0.3183 37 1 -0.4327 -5.1563 -3.9639 38 1 -0.9684 -4.6321 -6.0541 39 1 -1.4526 -5.2022 -8.6353 40 1 0.9736 -9.1212 -5.9986 41 1 2.8112 -9.0269 -7.6175 42 1 1.7054 -8.4543 -8.9405 43 1 1.2729 -10.8468 -9.2489 44 1 1.7160 -11.2174 -7.5262 45 1 -0.7138 -9.5869 -8.5620 46 1 -0.6224 -10.6344 -7.0802 47 1 1.2240 -3.0788 -2.8768 48 1 -0.4802 -3.5949 -2.7940 49 1 -0.7076 -2.7042 -0.5419 50 1 0.0229 -1.4299 -1.5515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016624519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:41 Heat of formation + Delta-G solvation = 110.594494 kcal Electronic energy + Delta-G solvation = -30186.278353 eV Core-core repulsion = 26217.257450 eV Total energy + Delta-G solvation = -3969.020902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.77980 -39.88314 -38.78808 -38.34092 -35.53297 -33.45439 -31.97032 -31.68682 -30.66062 -30.13199 -28.23398 -26.10869 -25.83246 -24.38600 -23.97108 -22.48825 -22.25649 -21.52930 -20.76964 -20.32614 -19.46413 -18.44372 -18.09468 -16.60414 -16.57206 -16.13529 -15.88497 -15.76433 -14.95669 -14.73175 -14.58187 -14.31876 -14.16219 -13.66316 -13.59830 -13.41998 -13.09668 -13.02368 -12.92333 -12.67198 -12.60857 -12.32515 -11.75979 -11.60380 -11.54624 -11.40230 -11.17891 -10.99690 -10.97873 -10.85539 -10.78480 -10.50896 -10.30797 -10.12653 -9.99547 -9.74441 -9.61264 -9.41381 -9.36975 -9.18504 -8.53152 -8.49500 -6.59910 -5.80418 -3.29780 1.07066 2.15547 2.42973 3.00984 3.05371 3.34760 3.42871 3.44840 3.97807 4.11423 4.15073 4.37761 4.38682 4.45589 4.47091 4.63050 4.89462 4.94532 5.08596 5.09765 5.19896 5.28114 5.34450 5.39393 5.39995 5.48105 5.48782 5.51633 5.52744 5.60197 5.61165 5.79148 5.96472 6.01538 6.05771 6.08236 6.25936 6.31381 6.42034 6.49449 6.54335 6.57606 6.61948 6.68266 6.81188 6.98293 7.31372 7.35402 7.66656 7.77783 7.88285 8.00712 8.47861 9.21418 9.82651 10.40852 11.26864 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002285 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.408573 B =12251.432872 C =12955.643088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.094 4.094 13 C -0.180 4.180 14 C 0.068 3.932 15 H 0.133 0.867 16 N -0.676 5.676 17 C 0.595 3.405 18 O -0.547 6.547 19 C -0.038 4.038 20 C -0.188 4.188 21 C -0.005 4.005 22 N -0.276 5.276 23 N -0.244 5.244 24 C 0.109 3.891 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.141 4.141 28 C -0.106 4.106 29 C 0.174 3.826 30 H 0.253 0.747 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.406 0.594 38 H 0.161 0.839 39 H 0.187 0.813 40 H 0.153 0.847 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.043 0.957 49 H 0.018 0.982 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 -17.503 -14.553 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.022 3.978 11 C -0.138 4.138 12 C -0.095 4.095 13 C -0.219 4.219 14 C -0.037 4.037 15 H 0.151 0.849 16 N -0.325 5.325 17 C 0.381 3.619 18 O -0.425 6.425 19 C -0.166 4.166 20 C -0.217 4.217 21 C -0.180 4.180 22 N -0.109 5.109 23 N -0.031 5.031 24 C 0.009 3.991 25 C -0.179 4.179 26 C -0.174 4.174 27 C -0.179 4.179 28 C -0.146 4.146 29 C 0.048 3.952 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.242 0.758 38 H 0.179 0.821 39 H 0.204 0.796 40 H 0.171 0.829 41 H 0.098 0.902 42 H 0.112 0.888 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.116 0.884 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.245 -18.976 -15.156 24.318 hybrid contribution -0.145 1.983 0.520 2.055 sum -1.390 -16.994 -14.636 22.471 Atomic orbital electron populations 1.69969 1.05259 1.25358 1.54256 1.25189 0.95407 0.98429 1.00444 0.86211 0.79351 0.83868 0.77275 1.20235 1.21575 1.21650 1.19227 0.90879 0.83976 1.44093 0.91884 1.43939 1.33413 1.03891 1.49975 1.20868 0.97591 0.87053 0.92244 1.21702 0.95335 0.99343 0.97394 1.21991 0.97890 0.90656 0.98983 1.23545 0.96491 1.03387 0.98429 1.21937 1.00863 1.02352 0.78585 0.84930 1.45067 1.50467 1.26571 1.10384 1.16856 0.79388 0.82890 0.82802 1.90709 1.41215 1.29003 1.81608 1.21416 1.09586 0.93852 0.91773 1.22329 1.04224 0.99105 0.96032 1.23568 1.04391 0.93640 0.96402 1.73076 1.13182 1.12403 1.12220 1.45788 1.39025 1.13915 1.04416 1.23879 0.94759 0.77010 1.03484 1.23348 0.98124 0.97391 0.99054 1.22690 0.95996 0.96164 1.02566 1.23350 0.97582 0.96315 1.00638 1.21848 0.98866 0.94247 0.99604 1.20766 0.88413 0.97302 0.88705 0.93655 0.96226 0.92638 0.92836 0.91811 0.88762 0.88300 0.75758 0.82122 0.79644 0.82950 0.90238 0.88783 0.90186 0.89359 0.88394 0.90415 0.91987 0.93799 0.96386 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.07 55.49 0.61 -24.93 16 2 C 0.00 0.10 5.04 -17.43 -0.09 0.02 16 3 Si 0.90 21.30 29.57 -169.99 -5.03 16.28 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.25 -6.74 9.54 -15.06 -0.14 -6.89 16 8 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 9 N -0.59 -14.28 2.93 -172.26 -0.50 -14.78 16 10 C 0.15 3.02 6.51 -3.68 -0.02 3.00 16 11 C -0.10 -1.65 5.83 -26.46 -0.15 -1.80 16 12 C -0.09 -1.48 1.94 -154.49 -0.30 -1.78 16 13 C -0.18 -2.50 9.86 -26.79 -0.26 -2.76 16 14 C 0.07 0.95 6.12 -68.01 -0.42 0.53 16 15 H 0.13 1.94 7.43 -51.93 -0.39 1.55 16 16 N -0.68 -8.73 5.32 -55.04 -0.29 -9.02 16 17 C 0.59 8.28 7.79 -12.63 -0.10 8.18 16 18 O -0.55 -8.71 14.08 5.25 0.07 -8.63 16 19 C -0.04 -0.48 6.96 -82.06 -0.57 -1.05 16 20 C -0.19 -2.02 10.50 -38.99 -0.41 -2.43 16 21 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 22 N -0.28 -3.30 11.15 30.59 0.34 -2.96 16 23 N -0.24 -3.00 3.46 -49.91 -0.17 -3.17 16 24 C 0.11 1.15 4.42 -67.12 -0.30 0.86 16 25 C -0.14 -1.24 7.80 -25.92 -0.20 -1.44 16 26 C -0.14 -0.93 8.08 -25.92 -0.21 -1.13 16 27 C -0.14 -1.17 7.75 -25.92 -0.20 -1.37 16 28 C -0.11 -1.87 5.37 -26.45 -0.14 -2.01 16 29 C 0.17 3.94 5.34 -3.67 -0.02 3.92 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 33 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.41 4.63 6.19 -40.82 -0.25 4.37 16 38 H 0.16 1.36 7.62 -52.48 -0.40 0.96 16 39 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.15 1.79 5.69 -51.93 -0.30 1.50 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.88 8.05 -51.93 -0.42 0.47 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.88 7.74 -51.93 -0.40 0.48 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 2.35 5.99 -51.93 -0.31 2.03 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -30.92 396.93 -10.58 -41.50 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.85 Total: 6.15 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.75 Total: -6.42 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.01 Total: -54.86 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.92 -10.58 -41.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016624519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.096 kcal (2) G-P(sol) polarization free energy of solvation -30.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds