Wall clock time and date at job start Wed Apr 1 2020 02:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48503 * 109.47172 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47175 * 299.99805 * 3 2 1 6 6 H 1.48503 * 109.47372 * 60.00226 * 3 2 1 7 7 C 1.38814 * 119.99561 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99723 * 190.69746 * 7 2 1 9 9 N 1.36934 * 120.00257 * 10.70837 * 7 2 1 10 10 C 1.46847 * 120.38249 * 212.70242 * 9 7 2 11 11 C 1.53341 * 108.81552 * 236.88148 * 10 9 7 12 12 C 1.53189 * 108.76945 * 308.68887 * 11 10 9 13 13 C 1.52853 * 117.65498 * 269.97522 * 12 11 10 14 14 C 1.52817 * 117.71606 * 201.12080 * 12 11 10 15 15 H 1.09007 * 117.49647 * 0.09955 * 14 12 11 16 16 N 1.46493 * 117.49999 * 215.09882 * 14 12 11 17 17 C 1.34781 * 119.99952 * 154.99522 * 16 14 12 18 18 O 1.21626 * 120.00118 * 4.85359 * 17 16 14 19 19 C 1.47166 * 119.99787 * 184.85228 * 17 16 14 20 20 C 1.38405 * 126.88910 * 5.39330 * 19 17 16 21 21 C 1.39671 * 105.36283 * 180.26600 * 20 19 17 22 22 N 1.30866 * 107.86052 * 359.75542 * 21 20 19 23 23 N 1.28443 * 110.92432 * 359.97438 * 22 21 20 24 24 C 1.46498 * 125.18666 * 180.02562 * 23 22 21 25 25 C 1.53779 * 113.61788 * 55.45498 * 24 23 22 26 26 C 1.53777 * 87.08623 * 219.93371 * 25 24 23 27 27 C 1.53781 * 113.69252 * 317.92029 * 24 23 22 28 28 C 1.53179 * 115.07947 * 55.44252 * 12 11 10 29 29 C 1.46844 * 120.38534 * 32.67975 * 9 7 2 30 30 H 0.96997 * 119.99991 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.57755 * 117.07973 * 10 9 7 32 32 H 1.08997 * 109.58047 * 356.68303 * 10 9 7 33 33 H 1.08993 * 109.59167 * 188.90053 * 11 10 9 34 34 H 1.09001 * 109.58807 * 68.46873 * 11 10 9 35 35 H 1.08994 * 117.50604 * 144.81098 * 13 12 11 36 36 H 1.08997 * 117.50372 * 359.75832 * 13 12 11 37 37 H 0.97004 * 120.00175 * 334.98905 * 16 14 12 38 38 H 1.08011 * 127.31543 * 359.97438 * 20 19 17 39 39 H 1.07995 * 126.06891 * 179.72284 * 21 20 19 40 40 H 1.08997 * 112.85170 * 186.65135 * 24 23 22 41 41 H 1.09004 * 113.61592 * 105.38626 * 25 24 23 42 42 H 1.09001 * 113.61711 * 334.48609 * 25 24 23 43 43 H 1.08995 * 113.61489 * 139.97694 * 26 25 24 44 44 H 1.09000 * 113.61484 * 270.88735 * 26 25 24 45 45 H 1.09003 * 113.61384 * 25.44484 * 27 24 23 46 46 H 1.09004 * 113.61550 * 254.54418 * 27 24 23 47 47 H 1.08998 * 109.58762 * 64.34282 * 28 12 11 48 48 H 1.08994 * 109.58893 * 184.77641 * 28 12 11 49 49 H 1.08997 * 109.57894 * 242.92406 * 29 9 7 50 50 H 1.09000 * 109.57644 * 3.32806 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0761 -1.2103 0.1742 9 7 1.3434 -2.3779 -0.2193 10 6 1.7867 -3.6164 0.4333 11 6 2.0764 -4.6673 -0.6451 12 6 0.8650 -4.7633 -1.5779 13 6 -0.2294 -5.7680 -1.2183 14 6 0.7018 -6.0400 -2.4017 15 1 1.4566 -6.8171 -2.2807 16 7 0.1403 -5.9088 -3.7484 17 6 0.4198 -6.8338 -4.6881 18 8 1.0646 -7.8226 -4.3953 19 6 -0.0554 -6.6473 -6.0684 20 6 -0.7050 -5.5377 -6.5806 21 6 -0.9535 -5.8405 -7.9213 22 7 -0.4749 -7.0352 -8.1583 23 7 0.0590 -7.5334 -7.1016 24 6 0.6889 -8.8533 -7.0161 25 6 1.8100 -9.0688 -8.0464 26 6 1.2720 -10.4994 -8.2157 27 6 -0.0898 -9.9583 -7.7491 28 6 0.4334 -3.4412 -2.2198 29 6 0.1764 -2.4146 -1.1099 30 1 -0.4850 0.8400 0.0004 31 1 1.0023 -3.9806 1.0969 32 1 2.6927 -3.4227 1.0074 33 1 2.2530 -5.6345 -0.1748 34 1 2.9555 -4.3709 -1.2174 35 1 -1.2597 -5.4914 -1.4416 36 1 -0.0875 -6.3663 -0.3183 37 1 -0.4327 -5.1563 -3.9639 38 1 -0.9684 -4.6321 -6.0541 39 1 -1.4526 -5.2022 -8.6353 40 1 0.9736 -9.1212 -5.9986 41 1 2.8112 -9.0269 -7.6175 42 1 1.7054 -8.4543 -8.9405 43 1 1.2729 -10.8468 -9.2489 44 1 1.7160 -11.2174 -7.5262 45 1 -0.7138 -9.5869 -8.5620 46 1 -0.6224 -10.6344 -7.0802 47 1 1.2240 -3.0788 -2.8768 48 1 -0.4802 -3.5949 -2.7940 49 1 -0.7076 -2.7042 -0.5419 50 1 0.0229 -1.4299 -1.5515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016624519.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:40 Heat of formation + Delta-G solvation = 93.573019 kcal Electronic energy + Delta-G solvation = -30187.016459 eV Core-core repulsion = 26217.257450 eV Total energy + Delta-G solvation = -3969.759009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.62534 -41.04676 -39.62336 -39.46833 -37.12752 -34.75228 -33.41580 -32.74587 -31.72509 -31.68837 -29.83970 -26.77337 -26.57124 -26.22915 -24.96810 -24.01246 -23.19950 -22.82020 -21.99778 -21.33721 -20.28726 -19.79222 -19.21585 -18.25971 -17.61140 -17.04725 -16.98205 -16.76505 -16.48661 -15.85766 -15.64860 -15.63553 -15.32471 -15.07658 -14.92325 -14.68274 -14.42049 -14.17668 -13.88200 -13.72102 -13.61511 -13.32407 -13.28854 -13.01317 -12.91367 -12.62775 -12.56245 -12.28575 -12.23265 -11.96451 -11.94591 -11.78723 -11.67874 -11.65091 -11.39008 -11.23851 -11.08667 -10.69584 -10.49972 -10.30262 -9.99858 -9.69958 -8.54062 -7.83728 -5.36169 0.13739 1.29782 1.46354 1.48608 1.58397 1.60228 2.01668 2.07188 2.51892 2.94926 3.29012 3.31712 3.42525 3.44936 3.65648 3.70474 3.74515 3.81653 3.87014 3.93659 3.98846 4.10588 4.14640 4.47973 4.53187 4.55835 4.63067 4.66486 4.72106 4.73802 4.80865 4.85447 4.88191 4.89544 4.93485 4.95568 4.97236 5.03356 5.10948 5.23859 5.30790 5.32307 5.38056 5.42429 5.57154 5.58007 5.67765 5.75247 5.83627 6.30467 6.46261 6.93553 7.07310 7.20286 7.90687 8.42359 9.20400 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.002285 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.408573 B =12251.432872 C =12955.643088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.047 4.047 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.060 0.940 9 N -0.610 5.610 10 C 0.146 3.854 11 C -0.087 4.087 12 C -0.113 4.113 13 C -0.167 4.167 14 C 0.086 3.914 15 H 0.132 0.868 16 N -0.671 5.671 17 C 0.595 3.405 18 O -0.571 6.571 19 C -0.064 4.064 20 C -0.181 4.181 21 C -0.007 4.007 22 N -0.289 5.289 23 N -0.251 5.251 24 C 0.093 3.907 25 C -0.140 4.140 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.090 4.090 29 C 0.181 3.819 30 H 0.250 0.750 31 H 0.018 0.982 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.414 0.586 38 H 0.183 0.817 39 H 0.217 0.783 40 H 0.138 0.862 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.050 0.950 48 H 0.071 0.929 49 H -0.001 1.001 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -18.734 -15.728 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.243 4.243 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.219 1.219 7 C -0.392 4.392 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.020 3.980 11 C -0.126 4.126 12 C -0.114 4.114 13 C -0.206 4.206 14 C -0.020 4.020 15 H 0.149 0.851 16 N -0.320 5.320 17 C 0.382 3.618 18 O -0.451 6.451 19 C -0.192 4.192 20 C -0.210 4.210 21 C -0.182 4.182 22 N -0.122 5.122 23 N -0.038 5.038 24 C -0.007 4.007 25 C -0.178 4.178 26 C -0.159 4.159 27 C -0.173 4.173 28 C -0.130 4.130 29 C 0.055 3.945 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.252 0.748 38 H 0.200 0.800 39 H 0.234 0.766 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.017 0.983 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.272 -20.227 -16.337 26.032 hybrid contribution -0.146 2.350 0.897 2.520 sum -1.419 -17.877 -15.440 23.664 Atomic orbital electron populations 1.70121 1.06480 1.25672 1.55589 1.25879 0.96176 1.01336 1.00894 0.85247 0.78550 0.80079 0.76810 1.19360 1.21572 1.21907 1.19494 0.91059 0.85322 1.43288 0.92200 1.44209 1.33582 1.04457 1.51033 1.20989 0.97144 0.86555 0.93303 1.21531 0.95395 0.99305 0.96388 1.21835 0.98757 0.90503 1.00332 1.23636 0.96275 1.01795 0.98853 1.21765 1.00745 1.00347 0.79109 0.85062 1.44990 1.50346 1.26739 1.09902 1.17024 0.78881 0.82524 0.83326 1.90696 1.42341 1.30001 1.82098 1.21459 1.11199 0.95072 0.91513 1.22678 1.02927 0.99122 0.96279 1.24158 1.03786 0.93375 0.96902 1.73073 1.13524 1.13233 1.12345 1.45981 1.39188 1.14321 1.04341 1.24042 0.96172 0.77220 1.03284 1.23333 0.97626 0.98721 0.98128 1.22684 0.94397 0.95110 1.03739 1.23318 0.98204 0.95612 1.00212 1.21565 0.99830 0.93768 0.97788 1.20557 0.87439 0.96996 0.89525 0.94086 0.96380 0.93033 0.89901 0.92785 0.88065 0.86920 0.74825 0.79988 0.76634 0.84425 0.90313 0.89526 0.88701 0.88134 0.89013 0.89784 0.93131 0.91027 0.98260 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.98 11.07 21.65 0.24 -53.74 16 2 C -0.05 -2.61 5.04 84.86 0.43 -2.18 16 3 Si 0.96 44.40 29.57 68.60 2.03 46.43 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.26 -14.19 9.54 84.03 0.80 -13.39 16 8 H 0.06 3.22 7.85 -2.91 -0.02 3.20 16 9 N -0.61 -29.90 2.93 -698.90 -2.05 -31.94 16 10 C 0.15 5.86 6.51 86.43 0.56 6.42 16 11 C -0.09 -2.79 5.83 30.77 0.18 -2.61 16 12 C -0.11 -3.37 1.94 -52.17 -0.10 -3.47 16 13 C -0.17 -4.20 9.86 30.55 0.30 -3.90 16 14 C 0.09 2.22 6.12 44.94 0.28 2.49 16 15 H 0.13 3.53 7.43 -2.38 -0.02 3.51 16 16 N -0.67 -16.03 5.32 -446.30 -2.38 -18.41 16 17 C 0.60 15.90 7.79 86.59 0.67 16.57 16 18 O -0.57 -17.82 14.08 -4.11 -0.06 -17.88 16 19 C -0.06 -1.57 6.96 40.79 0.28 -1.28 16 20 C -0.18 -3.54 10.50 22.66 0.24 -3.30 16 21 C -0.01 -0.14 12.03 85.18 1.02 0.89 16 22 N -0.29 -6.55 11.15 -57.14 -0.64 -7.18 16 23 N -0.25 -5.96 3.46 -311.82 -1.08 -7.04 16 24 C 0.09 1.92 4.42 45.52 0.20 2.12 16 25 C -0.14 -2.35 7.80 31.12 0.24 -2.11 16 26 C -0.12 -1.45 8.08 31.12 0.25 -1.19 16 27 C -0.14 -2.11 7.75 31.12 0.24 -1.87 16 28 C -0.09 -3.10 5.37 30.77 0.17 -2.93 16 29 C 0.18 8.30 5.34 86.43 0.46 8.76 16 30 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 31 H 0.02 0.73 8.14 -2.38 -0.02 0.72 16 32 H 0.05 2.06 7.92 -2.39 -0.02 2.04 16 33 H 0.08 2.17 8.10 -2.39 -0.02 2.15 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.41 8.47 6.19 -92.71 -0.57 7.89 16 38 H 0.18 2.59 7.62 -2.90 -0.02 2.57 16 39 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.14 3.25 5.69 -2.39 -0.01 3.24 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 1.58 8.05 -2.39 -0.02 1.56 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.55 7.74 -2.39 -0.02 1.54 16 46 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 2.02 6.75 -2.39 -0.02 2.00 16 49 H 0.00 -0.04 8.14 -2.39 -0.02 -0.05 16 50 H 0.06 2.99 5.99 -2.39 -0.01 2.98 16 Total: -1.00 -68.04 396.93 2.68 -65.36 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.38 Total: 25.39 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.23 Total: -0.98 kcal Atomic # 7 Polarization: -112.42 SS G_CDS: -5.90 Total: -118.32 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.06 Total: -17.88 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -68.04 2.68 -65.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016624519.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.933 kcal (2) G-P(sol) polarization free energy of solvation -68.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds