Wall clock time and date at job start Wed Apr 1 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48503 * 109.46963 * 269.99717 * 3 2 1 5 5 H 1.48500 * 109.46967 * 29.98976 * 3 2 1 6 6 H 1.48493 * 109.47455 * 149.99627 * 3 2 1 7 7 C 1.38810 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00287 * 162.84211 * 7 2 1 9 9 N 1.36941 * 120.00103 * 342.85208 * 7 2 1 10 10 C 1.46843 * 120.38022 * 330.66825 * 9 7 2 11 11 C 1.53352 * 108.81201 * 236.92900 * 10 9 7 12 12 C 1.53185 * 108.77015 * 308.68475 * 11 10 9 13 13 C 1.52840 * 117.65520 * 269.97687 * 12 11 10 14 14 C 1.52816 * 117.71725 * 201.11565 * 12 11 10 15 15 H 1.09007 * 117.51956 * 0.15150 * 14 12 11 16 16 N 1.46493 * 117.50151 * 215.09838 * 14 12 11 17 17 C 1.34782 * 119.99765 * 155.02551 * 16 14 12 18 18 O 1.21282 * 120.00106 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99839 * 179.97438 * 17 16 14 20 20 H 1.09007 * 109.71185 * 59.38612 * 19 17 16 21 21 C 1.53439 * 109.71958 * 179.97438 * 19 17 16 22 22 C 1.53153 * 109.19224 * 168.26389 * 21 19 17 23 23 C 1.53240 * 109.55800 * 290.57128 * 22 21 19 24 24 N 1.46585 * 108.80131 * 50.57740 * 23 22 21 25 25 N 1.39647 * 127.55438 * 162.64846 * 24 23 22 26 26 C 1.31031 * 108.13122 * 180.11061 * 25 24 23 27 27 C 1.40058 * 108.25247 * 359.97338 * 26 25 24 28 28 C 1.34755 * 107.79939 * 0.21828 * 27 26 25 29 29 C 1.53182 * 115.07320 * 55.44104 * 12 11 10 30 30 C 1.46840 * 120.38437 * 150.69150 * 9 7 2 31 31 H 0.97007 * 119.99810 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.58334 * 117.13284 * 10 9 7 33 33 H 1.09006 * 109.69392 * 356.79176 * 10 9 7 34 34 H 1.09002 * 109.59010 * 188.89638 * 11 10 9 35 35 H 1.09004 * 109.70572 * 68.54253 * 11 10 9 36 36 H 1.09004 * 117.50427 * 144.81452 * 13 12 11 37 37 H 1.09000 * 117.52860 * 359.74573 * 13 12 11 38 38 H 0.96998 * 120.00633 * 335.01997 * 16 14 12 39 39 H 1.09006 * 109.51345 * 48.35542 * 21 19 17 40 40 H 1.08996 * 109.52444 * 288.18330 * 21 19 17 41 41 H 1.08990 * 109.45962 * 170.53764 * 22 21 19 42 42 H 1.09009 * 109.45651 * 50.59276 * 22 21 19 43 43 H 1.08998 * 109.58379 * 290.78254 * 23 22 21 44 44 H 1.09004 * 109.58486 * 170.37377 * 23 22 21 45 45 H 1.07997 * 125.87279 * 179.97438 * 26 25 24 46 46 H 1.07998 * 126.10065 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.58470 * 64.35609 * 29 12 11 48 48 H 1.09006 * 109.58730 * 184.77380 * 29 12 11 49 49 H 1.09003 * 109.58038 * 242.87322 * 30 9 7 50 50 H 1.08999 * 109.58278 * 3.14784 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0542 -1.2231 -0.2754 9 7 1.3712 -2.3616 0.3507 10 6 0.2479 -2.3341 1.2961 11 6 0.5718 -3.2587 2.4759 12 6 0.9921 -4.6265 1.9292 13 6 -0.1030 -5.6698 1.7095 14 6 0.8866 -5.8293 2.8658 15 1 0.5147 -5.6509 3.8748 16 7 1.9070 -6.8733 2.7438 17 6 2.1894 -7.6659 3.7968 18 8 1.5985 -7.5151 4.8451 19 6 3.2388 -8.7402 3.6711 20 1 4.1963 -8.2901 3.4091 21 6 3.3686 -9.4952 5.0006 22 6 4.2098 -10.7564 4.7833 23 6 3.4219 -11.7584 3.9328 24 7 2.9187 -11.0722 2.7393 25 7 2.4524 -11.6516 1.5574 26 6 2.0989 -10.6882 0.7427 27 6 2.3300 -9.4646 1.3839 28 6 2.8366 -9.7284 2.6044 29 6 2.1569 -4.5981 0.9346 30 6 1.8016 -3.6467 -0.2144 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6575 -2.6810 0.7980 33 1 0.0983 -1.3172 1.6593 34 1 -0.3115 -3.3721 3.1045 35 1 1.3860 -2.8339 3.0631 36 1 0.0053 -6.3417 0.8580 37 1 -1.1258 -5.3864 1.9578 38 1 2.3794 -6.9943 1.9053 39 1 2.3778 -9.7755 5.3584 40 1 3.8550 -8.8554 5.7368 41 1 4.4464 -11.2057 5.7477 42 1 5.1343 -10.4922 4.2696 43 1 2.5839 -12.1485 4.5105 44 1 4.0756 -12.5782 3.6346 45 1 1.6984 -10.8156 -0.2521 46 1 2.1400 -8.4845 0.9720 47 1 3.0575 -4.2445 1.4367 48 1 2.3254 -5.6003 0.5404 49 1 0.9925 -4.0748 -0.8062 50 1 2.6755 -3.4930 -0.8474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016695690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:53 Heat of formation + Delta-G solvation = 86.467870 kcal Electronic energy + Delta-G solvation = -30655.257231 eV Core-core repulsion = 26685.190120 eV Total energy + Delta-G solvation = -3970.067111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.99152 -39.98944 -38.56033 -36.64678 -35.47743 -33.67739 -32.54898 -31.52088 -30.61970 -29.98942 -28.64195 -28.25940 -25.46732 -24.34774 -22.76654 -22.48287 -22.20196 -21.38331 -20.95723 -20.46542 -19.30672 -18.22952 -17.63128 -16.99890 -16.51800 -16.16579 -15.78566 -15.20505 -14.93767 -14.82356 -14.48670 -14.31165 -14.15697 -13.82901 -13.71750 -13.48025 -13.38249 -13.13083 -12.82058 -12.70196 -12.45929 -12.24791 -11.85783 -11.63807 -11.59937 -11.55521 -11.46163 -11.32722 -10.98311 -10.92575 -10.72029 -10.45954 -10.34213 -10.18910 -9.96078 -9.68874 -9.64969 -9.45791 -9.34836 -8.82651 -8.47847 -8.45382 -6.63444 -5.79118 -3.22820 1.51355 2.09744 2.45939 2.56994 3.00167 3.36805 3.44268 3.46506 3.94819 4.01619 4.12621 4.17277 4.28004 4.49345 4.60410 4.73638 4.73710 4.81849 4.96815 5.05594 5.12330 5.13119 5.18454 5.23392 5.36067 5.39540 5.41694 5.48567 5.55183 5.63384 5.75303 5.79145 5.85071 6.06277 6.06594 6.08663 6.28558 6.37863 6.43074 6.53549 6.61136 6.63912 6.64697 6.69486 6.82917 6.96249 7.36412 7.40783 7.44236 7.67693 7.79255 8.07880 8.46656 9.21806 9.85288 10.41954 11.28623 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.002341 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.595427 B =11955.488413 C =12272.363933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.105 4.105 12 C -0.095 4.095 13 C -0.181 4.181 14 C 0.067 3.933 15 H 0.132 0.868 16 N -0.689 5.689 17 C 0.531 3.469 18 O -0.535 6.535 19 C -0.047 4.047 20 H 0.121 0.879 21 C -0.108 4.108 22 C -0.136 4.136 23 C 0.130 3.870 24 N -0.364 5.364 25 N -0.292 5.292 26 C 0.049 3.951 27 C -0.263 4.263 28 C 0.089 3.911 29 C -0.097 4.097 30 C 0.150 3.850 31 H 0.254 0.746 32 H 0.018 0.982 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.186 0.814 46 H 0.147 0.853 47 H 0.064 0.936 48 H 0.045 0.955 49 H 0.019 0.981 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -22.269 7.636 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.097 4.097 13 C -0.219 4.219 14 C -0.039 4.039 15 H 0.150 0.850 16 N -0.339 5.339 17 C 0.315 3.685 18 O -0.411 6.411 19 C -0.070 4.070 20 H 0.138 0.862 21 C -0.146 4.146 22 C -0.174 4.174 23 C 0.009 3.991 24 N -0.148 5.148 25 N -0.113 5.113 26 C -0.136 4.136 27 C -0.292 4.292 28 C -0.039 4.039 29 C -0.137 4.137 30 C 0.023 3.977 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.239 0.761 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.203 0.797 46 H 0.165 0.835 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.682 -23.381 8.656 25.812 hybrid contribution 0.468 1.618 -0.720 1.832 sum 7.150 -21.763 7.935 24.243 Atomic orbital electron populations 1.70026 1.05285 1.25513 1.53712 1.25057 0.95249 0.98435 1.00827 0.86334 0.79216 0.83736 0.77704 1.21407 1.21560 1.20498 1.19164 0.92557 0.84944 1.41667 0.91868 1.43958 1.37474 1.01635 1.48055 1.20757 0.88756 0.98568 0.87191 1.21881 0.99660 0.93136 0.99802 1.21961 0.97954 0.91188 0.98588 1.23526 0.96190 1.02579 0.99621 1.21939 0.93335 0.91311 0.97265 0.85045 1.45535 1.39910 1.33771 1.14671 1.19961 0.83000 0.81660 0.83835 1.90705 1.51471 1.70680 1.28279 1.20179 0.99609 0.92807 0.94422 0.86182 1.21536 1.02144 0.95836 0.95094 1.21997 0.98962 0.95622 1.00859 1.21850 0.98957 0.95709 0.82545 1.48674 1.49579 1.03583 1.12962 1.77309 1.19406 1.22173 0.92385 1.23939 0.99685 0.90178 0.99828 1.21137 1.13033 0.99857 0.95171 1.20474 1.01855 0.85375 0.96193 1.21633 0.96182 0.98616 0.97252 1.20831 0.97432 0.87055 0.92360 0.93623 0.96352 0.89188 0.93050 0.92141 0.88962 0.88329 0.76113 0.89855 0.89349 0.88391 0.90379 0.89702 0.88821 0.79698 0.83501 0.91751 0.93682 0.96295 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 11.21 55.49 0.62 -25.18 16 2 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 3 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.81 9.54 -15.06 -0.14 -6.96 16 8 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -14.30 2.93 -172.25 -0.51 -14.81 16 10 C 0.17 4.02 5.39 -3.67 -0.02 4.00 16 11 C -0.11 -1.96 5.83 -26.45 -0.15 -2.11 16 12 C -0.10 -1.52 1.94 -154.50 -0.30 -1.82 16 13 C -0.18 -2.56 9.86 -26.80 -0.26 -2.82 16 14 C 0.07 0.94 6.14 -68.01 -0.42 0.53 16 15 H 0.13 2.03 7.40 -51.93 -0.38 1.65 16 16 N -0.69 -8.27 4.75 -53.88 -0.26 -8.52 16 17 C 0.53 6.60 7.07 -10.98 -0.08 6.52 16 18 O -0.53 -8.46 15.37 5.56 0.09 -8.38 16 19 C -0.05 -0.43 2.90 -92.62 -0.27 -0.70 16 20 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 21 C -0.11 -0.83 4.77 -26.42 -0.13 -0.96 16 22 C -0.14 -0.69 5.93 -26.53 -0.16 -0.85 16 23 C 0.13 0.88 7.28 -3.87 -0.03 0.85 16 24 N -0.36 -3.76 4.04 -56.95 -0.23 -3.99 16 25 N -0.29 -3.45 12.62 30.70 0.39 -3.06 16 26 C 0.05 0.51 12.03 -17.21 -0.21 0.30 16 27 C -0.26 -2.71 9.82 -40.13 -0.39 -3.10 16 28 C 0.09 0.91 6.13 -82.22 -0.50 0.41 16 29 C -0.10 -1.55 5.37 -26.46 -0.14 -1.69 16 30 C 0.15 2.99 6.52 -3.68 -0.02 2.96 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 34 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.40 4.13 4.87 -40.82 -0.20 3.93 16 39 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.37 8.12 -51.92 -0.42 -0.05 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.19 1.36 8.06 -52.49 -0.42 0.93 16 46 H 0.15 1.35 5.95 -52.49 -0.31 1.03 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.05 1.07 7.92 -51.93 -0.41 0.65 16 LS Contribution 389.83 15.07 5.87 5.87 Total: -1.00 -32.98 389.83 -10.19 -43.17 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.83 Total: 3.97 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.31 Total: -5.46 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.02 Total: -55.55 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.98 -10.19 -43.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016695690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.642 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds