Wall clock time and date at job start Wed Apr 1 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48503 * 109.46963 * 269.99717 * 3 2 1 5 5 H 1.48500 * 109.46967 * 29.98976 * 3 2 1 6 6 H 1.48493 * 109.47455 * 149.99627 * 3 2 1 7 7 C 1.38810 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00287 * 162.84211 * 7 2 1 9 9 N 1.36941 * 120.00103 * 342.85208 * 7 2 1 10 10 C 1.46843 * 120.38022 * 330.66825 * 9 7 2 11 11 C 1.53352 * 108.81201 * 236.92900 * 10 9 7 12 12 C 1.53185 * 108.77015 * 308.68475 * 11 10 9 13 13 C 1.52840 * 117.65520 * 269.97687 * 12 11 10 14 14 C 1.52816 * 117.71725 * 201.11565 * 12 11 10 15 15 H 1.09007 * 117.51956 * 0.15150 * 14 12 11 16 16 N 1.46493 * 117.50151 * 215.09838 * 14 12 11 17 17 C 1.34782 * 119.99765 * 155.02551 * 16 14 12 18 18 O 1.21282 * 120.00106 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99839 * 179.97438 * 17 16 14 20 20 H 1.09007 * 109.71185 * 59.38612 * 19 17 16 21 21 C 1.53439 * 109.71958 * 179.97438 * 19 17 16 22 22 C 1.53153 * 109.19224 * 168.26389 * 21 19 17 23 23 C 1.53240 * 109.55800 * 290.57128 * 22 21 19 24 24 N 1.46585 * 108.80131 * 50.57740 * 23 22 21 25 25 N 1.39647 * 127.55438 * 162.64846 * 24 23 22 26 26 C 1.31031 * 108.13122 * 180.11061 * 25 24 23 27 27 C 1.40058 * 108.25247 * 359.97338 * 26 25 24 28 28 C 1.34755 * 107.79939 * 0.21828 * 27 26 25 29 29 C 1.53182 * 115.07320 * 55.44104 * 12 11 10 30 30 C 1.46840 * 120.38437 * 150.69150 * 9 7 2 31 31 H 0.97007 * 119.99810 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.58334 * 117.13284 * 10 9 7 33 33 H 1.09006 * 109.69392 * 356.79176 * 10 9 7 34 34 H 1.09002 * 109.59010 * 188.89638 * 11 10 9 35 35 H 1.09004 * 109.70572 * 68.54253 * 11 10 9 36 36 H 1.09004 * 117.50427 * 144.81452 * 13 12 11 37 37 H 1.09000 * 117.52860 * 359.74573 * 13 12 11 38 38 H 0.96998 * 120.00633 * 335.01997 * 16 14 12 39 39 H 1.09006 * 109.51345 * 48.35542 * 21 19 17 40 40 H 1.08996 * 109.52444 * 288.18330 * 21 19 17 41 41 H 1.08990 * 109.45962 * 170.53764 * 22 21 19 42 42 H 1.09009 * 109.45651 * 50.59276 * 22 21 19 43 43 H 1.08998 * 109.58379 * 290.78254 * 23 22 21 44 44 H 1.09004 * 109.58486 * 170.37377 * 23 22 21 45 45 H 1.07997 * 125.87279 * 179.97438 * 26 25 24 46 46 H 1.07998 * 126.10065 * 179.97438 * 27 26 25 47 47 H 1.09004 * 109.58470 * 64.35609 * 29 12 11 48 48 H 1.09006 * 109.58730 * 184.77380 * 29 12 11 49 49 H 1.09003 * 109.58038 * 242.87322 * 30 9 7 50 50 H 1.08999 * 109.58278 * 3.14784 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0542 -1.2231 -0.2754 9 7 1.3712 -2.3616 0.3507 10 6 0.2479 -2.3341 1.2961 11 6 0.5718 -3.2587 2.4759 12 6 0.9921 -4.6265 1.9292 13 6 -0.1030 -5.6698 1.7095 14 6 0.8866 -5.8293 2.8658 15 1 0.5147 -5.6509 3.8748 16 7 1.9070 -6.8733 2.7438 17 6 2.1894 -7.6659 3.7968 18 8 1.5985 -7.5151 4.8451 19 6 3.2388 -8.7402 3.6711 20 1 4.1963 -8.2901 3.4091 21 6 3.3686 -9.4952 5.0006 22 6 4.2098 -10.7564 4.7833 23 6 3.4219 -11.7584 3.9328 24 7 2.9187 -11.0722 2.7393 25 7 2.4524 -11.6516 1.5574 26 6 2.0989 -10.6882 0.7427 27 6 2.3300 -9.4646 1.3839 28 6 2.8366 -9.7284 2.6044 29 6 2.1569 -4.5981 0.9346 30 6 1.8016 -3.6467 -0.2144 31 1 -0.4850 0.8401 -0.0004 32 1 -0.6575 -2.6810 0.7980 33 1 0.0983 -1.3172 1.6593 34 1 -0.3115 -3.3721 3.1045 35 1 1.3860 -2.8339 3.0631 36 1 0.0053 -6.3417 0.8580 37 1 -1.1258 -5.3864 1.9578 38 1 2.3794 -6.9943 1.9053 39 1 2.3778 -9.7755 5.3584 40 1 3.8550 -8.8554 5.7368 41 1 4.4464 -11.2057 5.7477 42 1 5.1343 -10.4922 4.2696 43 1 2.5839 -12.1485 4.5105 44 1 4.0756 -12.5782 3.6346 45 1 1.6984 -10.8156 -0.2521 46 1 2.1400 -8.4845 0.9720 47 1 3.0575 -4.2445 1.4367 48 1 2.3254 -5.6003 0.5404 49 1 0.9925 -4.0748 -0.8062 50 1 2.6755 -3.4930 -0.8474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016695690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:51 Heat of formation + Delta-G solvation = 66.776202 kcal Electronic energy + Delta-G solvation = -30656.111126 eV Core-core repulsion = 26685.190120 eV Total energy + Delta-G solvation = -3970.921006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.71982 -41.06253 -39.80152 -37.42464 -36.95270 -34.77288 -33.77325 -32.97217 -31.63341 -31.26010 -29.92489 -29.29979 -26.30586 -26.07569 -24.05815 -23.47955 -23.13495 -22.60210 -21.99972 -21.62057 -19.97758 -19.75188 -18.65198 -18.17181 -17.69364 -17.30179 -16.77516 -16.52034 -15.99822 -15.72960 -15.59985 -15.35926 -15.18353 -15.08455 -14.92146 -14.80263 -14.50712 -14.37451 -14.13422 -13.73984 -13.44187 -13.26085 -13.10353 -13.06191 -12.86276 -12.56736 -12.51648 -12.41604 -12.26025 -12.08865 -12.02414 -11.99872 -11.76306 -11.66147 -11.37107 -11.25899 -11.12948 -10.68435 -10.45589 -10.19592 -9.67513 -9.54700 -8.59061 -7.84175 -5.30638 0.76948 1.34980 1.47083 1.49218 1.58365 1.64487 1.79596 2.06919 2.53144 2.95452 3.30885 3.33965 3.36858 3.52308 3.65691 3.68098 3.83016 3.87908 3.97954 4.00520 4.11160 4.15643 4.21096 4.27772 4.53867 4.55820 4.62618 4.64278 4.70227 4.75809 4.77158 4.87011 4.89640 4.93809 4.97469 4.98988 5.05979 5.08465 5.11576 5.19535 5.22300 5.33840 5.41099 5.49094 5.58134 5.67991 5.68544 5.80384 5.99500 6.43649 6.45031 6.71165 7.12716 7.18861 7.91541 8.42318 9.20852 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021490 B = 0.002341 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.595427 B =11955.488413 C =12272.363933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.271 1.271 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.181 3.819 11 C -0.094 4.094 12 C -0.112 4.112 13 C -0.171 4.171 14 C 0.086 3.914 15 H 0.120 0.880 16 N -0.681 5.681 17 C 0.530 3.470 18 O -0.571 6.571 19 C -0.040 4.040 20 H 0.146 0.854 21 C -0.108 4.108 22 C -0.124 4.124 23 C 0.119 3.881 24 N -0.369 5.369 25 N -0.324 5.324 26 C 0.042 3.958 27 C -0.275 4.275 28 C 0.083 3.917 29 C -0.083 4.083 30 C 0.145 3.855 31 H 0.249 0.751 32 H -0.002 1.002 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.412 0.588 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.107 0.893 45 H 0.207 0.793 46 H 0.157 0.843 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.017 0.983 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.970 -24.206 7.985 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.791 3.209 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.133 4.133 12 C -0.114 4.114 13 C -0.209 4.209 14 C -0.021 4.021 15 H 0.137 0.863 16 N -0.332 5.332 17 C 0.316 3.684 18 O -0.450 6.450 19 C -0.063 4.063 20 H 0.164 0.836 21 C -0.146 4.146 22 C -0.162 4.162 23 C -0.001 4.001 24 N -0.153 5.153 25 N -0.145 5.145 26 C -0.143 4.143 27 C -0.304 4.304 28 C -0.046 4.046 29 C -0.122 4.122 30 C 0.019 3.981 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.252 0.748 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.143 0.857 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.224 0.776 46 H 0.175 0.825 47 H 0.077 0.923 48 H 0.103 0.897 49 H 0.035 0.965 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.616 -25.364 8.991 28.256 hybrid contribution -0.153 2.166 -0.834 2.326 sum 8.463 -23.198 8.156 26.006 Atomic orbital electron populations 1.70177 1.06667 1.25748 1.55418 1.25786 0.95975 1.01459 1.01410 0.85346 0.78131 0.79834 0.77558 1.21120 1.22068 1.19592 1.19499 0.92845 0.86209 1.40570 0.91700 1.44222 1.37483 1.02580 1.48813 1.20513 0.88055 0.97513 0.88408 1.21624 0.99893 0.93943 0.97836 1.21790 0.99275 0.90325 0.99977 1.23605 0.95786 1.01404 1.00131 1.21641 0.93470 0.90460 0.96498 0.86255 1.45471 1.39412 1.33028 1.15247 1.20530 0.82974 0.81843 0.83046 1.90696 1.52886 1.71746 1.29701 1.20223 0.99272 0.91702 0.95060 0.83622 1.21554 1.01642 0.97026 0.94380 1.21983 0.98274 0.93956 1.01964 1.22177 0.99520 0.96547 0.81821 1.48981 1.49255 1.03769 1.13264 1.77257 1.20568 1.23284 0.93417 1.24383 0.99214 0.90023 1.00644 1.21365 1.13346 1.00339 0.95387 1.20658 1.01807 0.85688 0.96407 1.21455 0.95717 0.99474 0.95528 1.21004 0.97190 0.85980 0.93892 0.94191 0.98357 0.92898 0.91711 0.93230 0.87160 0.88378 0.74837 0.91981 0.88613 0.85724 0.89393 0.89530 0.87520 0.77602 0.82511 0.92271 0.89717 0.96505 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 11.21 21.65 0.24 -54.96 16 2 C -0.05 -2.84 4.90 84.86 0.42 -2.42 16 3 Si 0.96 44.69 29.59 68.60 2.03 46.72 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.26 -14.17 9.54 84.03 0.80 -13.37 16 8 H 0.07 3.43 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -29.83 2.93 -698.89 -2.05 -31.88 16 10 C 0.18 8.64 5.39 86.43 0.47 9.10 16 11 C -0.09 -3.49 5.83 30.77 0.18 -3.31 16 12 C -0.11 -3.39 1.94 -52.17 -0.10 -3.49 16 13 C -0.17 -4.45 9.86 30.55 0.30 -4.15 16 14 C 0.09 2.24 6.14 44.94 0.28 2.52 16 15 H 0.12 3.53 7.40 -2.38 -0.02 3.52 16 16 N -0.68 -14.54 4.75 -442.77 -2.10 -16.64 16 17 C 0.53 12.07 7.07 87.66 0.62 12.69 16 18 O -0.57 -17.43 15.37 -3.04 -0.05 -17.47 16 19 C -0.04 -0.63 2.90 -12.09 -0.04 -0.66 16 20 H 0.15 1.56 8.14 -2.38 -0.02 1.54 16 21 C -0.11 -1.41 4.77 30.79 0.15 -1.27 16 22 C -0.12 -0.88 5.93 30.73 0.18 -0.70 16 23 C 0.12 1.35 7.28 86.44 0.63 1.98 16 24 N -0.37 -6.90 4.04 -334.10 -1.35 -8.25 16 25 N -0.32 -7.17 12.62 -56.80 -0.72 -7.89 16 26 C 0.04 0.79 12.03 85.25 1.03 1.82 16 27 C -0.28 -5.01 9.82 21.91 0.22 -4.79 16 28 C 0.08 1.51 6.13 41.28 0.25 1.76 16 29 C -0.08 -2.45 5.37 30.77 0.17 -2.28 16 30 C 0.14 5.63 6.52 86.43 0.56 6.19 16 31 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 32 H 0.00 -0.09 8.14 -2.38 -0.02 -0.10 16 33 H 0.05 2.90 5.95 -2.38 -0.01 2.89 16 34 H 0.06 2.19 8.10 -2.39 -0.02 2.18 16 35 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.41 7.02 4.87 -92.71 -0.45 6.57 16 39 H 0.06 1.09 7.70 -2.38 -0.02 1.08 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 42 H 0.09 0.51 8.12 -2.38 -0.02 0.49 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 45 H 0.21 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.16 2.38 5.95 -2.91 -0.02 2.36 16 47 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.08 1.84 6.75 -2.38 -0.02 1.82 16 49 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 Total: -1.00 -73.52 389.83 2.61 -70.92 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.50 Total: 19.86 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 6.10 Total: -0.39 kcal Atomic # 7 Polarization: -113.65 SS G_CDS: -5.98 Total: -119.63 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.47 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.52 2.61 -70.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016695690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.694 kcal (2) G-P(sol) polarization free energy of solvation -73.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds