Wall clock time and date at job start Wed Apr 1 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47177 * 270.00419 * 3 2 1 5 5 H 1.48497 * 109.46858 * 30.00130 * 3 2 1 6 6 H 1.48500 * 109.47245 * 150.00196 * 3 2 1 7 7 C 1.38815 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00047 * 197.85360 * 7 2 1 9 9 N 1.36935 * 120.00097 * 17.85295 * 7 2 1 10 10 C 1.46845 * 120.38528 * 208.90872 * 9 7 2 11 11 C 1.53352 * 108.81456 * 236.88353 * 10 9 7 12 12 C 1.53185 * 108.76423 * 308.68607 * 11 10 9 13 13 C 1.52845 * 117.65630 * 269.97938 * 12 11 10 14 14 C 1.52822 * 117.71290 * 201.12480 * 12 11 10 15 15 H 1.08996 * 117.49753 * 215.09731 * 14 12 11 16 16 N 1.46492 * 117.50099 * 0.13570 * 14 12 11 17 17 C 1.34774 * 120.00032 * 204.99582 * 16 14 12 18 18 O 1.21284 * 120.00154 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00361 * 180.02562 * 17 16 14 20 20 H 1.09005 * 109.68122 * 300.00728 * 19 17 16 21 21 C 1.53398 * 109.68606 * 179.48669 * 19 17 16 22 22 C 1.53140 * 109.43902 * 190.66810 * 21 19 17 23 23 C 1.53354 * 109.56414 * 69.95642 * 22 21 19 24 24 C 1.50865 * 108.40737 * 310.01438 * 23 22 21 25 25 N 1.33582 * 128.03088 * 196.75357 * 24 23 22 26 26 C 1.30753 * 109.14511 * 179.91172 * 25 24 23 27 27 N 1.35316 * 108.76774 * 0.02562 * 26 25 24 28 28 H 0.96999 * 126.49578 * 180.02562 * 27 26 25 29 29 C 1.35030 * 123.98950 * 16.71164 * 24 23 22 30 30 C 1.53182 * 115.07729 * 55.45057 * 12 11 10 31 31 C 1.46847 * 120.38471 * 28.88690 * 9 7 2 32 32 H 0.97006 * 119.99482 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.58040 * 117.08835 * 10 9 7 34 34 H 1.08997 * 109.58238 * 356.68809 * 10 9 7 35 35 H 1.09003 * 109.58641 * 68.46804 * 11 10 9 36 36 H 1.09001 * 109.59035 * 188.90049 * 11 10 9 37 37 H 1.08999 * 117.50716 * 359.76433 * 13 12 11 38 38 H 1.09010 * 117.50100 * 144.81458 * 13 12 11 39 39 H 0.96996 * 120.00399 * 25.00359 * 16 14 12 40 40 H 1.09007 * 109.47217 * 310.62607 * 21 19 17 41 41 H 1.08999 * 109.47334 * 70.63852 * 21 19 17 42 42 H 1.08994 * 109.44092 * 309.92575 * 22 21 19 43 43 H 1.09001 * 109.44234 * 189.97590 * 22 21 19 44 44 H 1.09004 * 109.67323 * 190.28982 * 23 22 21 45 45 H 1.08993 * 109.67638 * 69.74314 * 23 22 21 46 46 H 1.08002 * 125.61499 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.59217 * 64.33306 * 30 12 11 48 48 H 1.09005 * 109.58957 * 184.76560 * 30 12 11 49 49 H 1.09002 * 109.57851 * 3.31223 * 31 9 7 50 50 H 1.09003 * 109.58041 * 242.91413 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0512 -1.2249 0.2862 9 7 1.3749 -2.3594 -0.3646 10 6 1.8050 -3.6491 0.1905 11 6 2.1664 -4.5893 -0.9658 12 6 1.0056 -4.6103 -1.9651 13 6 -0.0888 -5.6572 -1.7593 14 6 0.9055 -5.8048 -2.9131 15 1 0.5375 -5.6173 -3.9218 16 7 1.9270 -6.8484 -2.7965 17 6 2.2150 -7.6307 -3.8555 18 8 1.6289 -7.4705 -4.9051 19 6 3.2653 -8.7047 -3.7355 20 1 4.2232 -8.2539 -3.4758 21 6 3.3916 -9.4551 -5.0674 22 6 4.2555 -10.7039 -4.8689 23 6 3.4901 -11.7287 -4.0229 24 6 2.9606 -11.0318 -2.7941 25 7 2.5148 -11.5842 -1.6625 26 6 2.1454 -10.6375 -0.8397 27 7 2.3488 -9.4395 -1.4350 28 1 2.1633 -8.5670 -1.0538 29 6 2.8633 -9.6907 -2.6699 30 6 0.5855 -3.2382 -2.5011 31 6 0.2554 -2.3249 -1.3143 32 1 -0.4850 0.8401 0.0004 33 1 0.9941 -4.0838 0.7749 34 1 2.6774 -3.5003 0.8267 35 1 3.0684 -4.2296 -1.4609 36 1 2.3349 -5.5948 -0.5802 37 1 0.0170 -6.3366 -0.9135 38 1 -1.1110 -5.3725 -2.0090 39 1 2.3960 -6.9765 -1.9572 40 1 2.4009 -9.7503 -5.4135 41 1 3.8566 -8.8048 -5.8082 42 1 5.1787 -10.4290 -4.3589 43 1 4.4927 -11.1391 -5.8397 44 1 4.1614 -12.5349 -3.7270 45 1 2.6601 -12.1349 -4.6008 46 1 1.7441 -10.7872 0.1518 47 1 1.4023 -2.8058 -3.0790 48 1 -0.2951 -3.3472 -3.1343 49 1 0.1080 -1.3046 -1.6684 50 1 -0.6514 -2.6777 -0.8230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016823907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:06 Heat of formation + Delta-G solvation = 57.695022 kcal Electronic energy + Delta-G solvation = -30692.973000 eV Core-core repulsion = 26721.658205 eV Total energy + Delta-G solvation = -3971.314795 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.71719 -40.18706 -38.70886 -36.65613 -35.57736 -33.94065 -32.88247 -31.67352 -30.48852 -30.05336 -29.22335 -28.36613 -24.91518 -24.43249 -22.67868 -22.57394 -22.48824 -21.60453 -20.95616 -20.65858 -19.22821 -18.44694 -18.22827 -17.32116 -16.62748 -16.21920 -15.80259 -15.10054 -15.06992 -14.88314 -14.63395 -14.27311 -14.12328 -13.82584 -13.69924 -13.62896 -13.43369 -13.16455 -12.93805 -12.77098 -12.36798 -12.34793 -11.79512 -11.72205 -11.54537 -11.44582 -11.25163 -11.20227 -11.06265 -10.80795 -10.54230 -10.47302 -10.42131 -10.17514 -10.04487 -9.99227 -9.78264 -9.73016 -9.48546 -8.64900 -8.51991 -8.47929 -6.72784 -5.85825 -3.29647 1.62366 2.31421 2.68195 2.78266 2.92876 3.33166 3.40630 3.41285 4.01207 4.11368 4.21200 4.38553 4.43415 4.46066 4.67944 4.81388 4.85729 4.96400 4.97895 4.99375 5.03574 5.14414 5.30161 5.31952 5.34245 5.52742 5.57915 5.64014 5.70628 5.73132 5.79016 5.88426 5.90770 5.93731 5.93837 6.04697 6.16342 6.29572 6.36912 6.41747 6.50527 6.52924 6.58614 6.71558 6.84311 6.99032 7.20555 7.28296 7.59302 7.73050 7.75495 7.94725 8.39208 9.14483 9.77672 10.33863 11.21910 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.002358 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.641904 B =11870.584949 C =12191.048112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.150 3.850 11 C -0.097 4.097 12 C -0.095 4.095 13 C -0.182 4.182 14 C 0.067 3.933 15 H 0.135 0.865 16 N -0.699 5.699 17 C 0.520 3.480 18 O -0.526 6.526 19 C -0.028 4.028 20 H 0.111 0.889 21 C -0.095 4.095 22 C -0.118 4.118 23 C -0.036 4.036 24 C 0.020 3.980 25 N -0.486 5.486 26 C 0.188 3.812 27 N -0.560 5.560 28 H 0.416 0.584 29 C -0.027 4.027 30 C -0.106 4.106 31 C 0.173 3.827 32 H 0.254 0.746 33 H 0.019 0.981 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.391 0.609 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.211 0.789 47 H 0.061 0.939 48 H 0.052 0.948 49 H 0.091 0.909 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 -20.761 -5.847 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.023 3.977 11 C -0.136 4.136 12 C -0.096 4.096 13 C -0.221 4.221 14 C -0.038 4.038 15 H 0.152 0.848 16 N -0.350 5.350 17 C 0.305 3.695 18 O -0.402 6.402 19 C -0.050 4.050 20 H 0.128 0.872 21 C -0.134 4.134 22 C -0.156 4.156 23 C -0.074 4.074 24 C -0.110 4.110 25 N -0.204 5.204 26 C -0.095 4.095 27 N -0.163 5.163 28 H 0.255 0.745 29 C -0.143 4.143 30 C -0.145 4.145 31 C 0.047 3.953 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.226 0.774 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.228 0.772 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.109 0.891 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.558 -21.377 -6.437 23.006 hybrid contribution 0.386 2.155 0.840 2.345 sum 5.944 -19.222 -5.596 20.884 Atomic orbital electron populations 1.70031 1.05299 1.25620 1.53474 1.25057 0.95261 0.98500 1.00686 0.86301 0.79143 0.83627 0.77757 1.21374 1.21733 1.20429 1.19187 0.92848 0.85018 1.41528 0.91763 1.43966 1.37835 1.01422 1.47835 1.20827 0.97422 0.87145 0.92292 1.21639 0.96359 0.98283 0.97340 1.21978 0.97815 0.91397 0.98411 1.23532 0.96438 1.02618 0.99474 1.21973 0.93047 0.91413 0.97413 0.84788 1.45538 1.40434 1.34988 1.13997 1.20489 0.83460 0.81760 0.83751 1.90710 1.51532 1.69921 1.28006 1.19949 0.98158 0.92205 0.94710 0.87174 1.21436 1.02140 0.96251 0.93551 1.21644 0.98504 0.95094 1.00360 1.19993 0.99503 0.97150 0.90799 1.20527 1.04978 0.89594 0.95907 1.70032 1.16347 1.31919 1.02126 1.25120 1.04675 0.79112 1.00575 1.43092 1.49220 1.10519 1.13504 0.74478 1.20452 1.09360 0.96492 0.88039 1.21888 0.99778 0.92920 0.99925 1.20777 0.88771 0.98777 0.87009 0.93552 0.96335 0.92683 0.91605 0.94226 0.89352 0.88110 0.77415 0.90144 0.90119 0.91396 0.90401 0.90238 0.90412 0.77248 0.92022 0.92929 0.89076 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 11.23 55.49 0.62 -24.85 16 2 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 3 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.26 -6.78 9.54 -15.06 -0.14 -6.93 16 8 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 9 N -0.59 -14.00 2.94 -172.25 -0.51 -14.50 16 10 C 0.15 2.89 6.51 -3.67 -0.02 2.87 16 11 C -0.10 -1.47 5.37 -26.45 -0.14 -1.61 16 12 C -0.09 -1.45 1.94 -154.49 -0.30 -1.74 16 13 C -0.18 -2.43 9.86 -26.80 -0.26 -2.69 16 14 C 0.07 0.90 6.14 -68.01 -0.42 0.48 16 15 H 0.13 2.02 7.40 -51.93 -0.38 1.63 16 16 N -0.70 -7.87 4.89 -53.89 -0.26 -8.14 16 17 C 0.52 6.36 7.14 -10.99 -0.08 6.28 16 18 O -0.53 -8.33 15.40 5.55 0.09 -8.24 16 19 C -0.03 -0.26 2.90 -92.74 -0.27 -0.53 16 20 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.10 -0.83 4.68 -26.45 -0.12 -0.95 16 22 C -0.12 -0.80 5.89 -26.48 -0.16 -0.96 16 23 C -0.04 -0.30 6.30 -27.62 -0.17 -0.48 16 24 C 0.02 0.22 6.98 -82.89 -0.58 -0.36 16 25 N -0.49 -5.65 11.25 -10.74 -0.12 -5.77 16 26 C 0.19 1.67 13.05 -89.91 -1.17 0.50 16 27 N -0.56 -4.74 5.90 -10.28 -0.06 -4.80 16 28 H 0.42 2.79 6.81 -40.82 -0.28 2.51 16 29 C -0.03 -0.27 6.32 -81.86 -0.52 -0.79 16 30 C -0.11 -1.92 5.83 -26.46 -0.15 -2.07 16 31 C 0.17 3.92 5.40 -3.67 -0.02 3.90 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.04 0.46 6.75 -51.93 -0.35 0.11 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.35 8.14 -51.92 -0.42 0.93 16 39 H 0.39 3.57 5.16 -40.82 -0.21 3.36 16 40 H 0.08 0.83 7.74 -51.92 -0.40 0.43 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 49 H 0.09 2.35 5.93 -51.93 -0.31 2.05 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -32.71 389.01 -11.84 -44.55 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -7.81 Total: 4.77 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.62 Total: -5.05 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.33 Total: -58.05 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.71 -11.84 -44.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016823907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.240 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds