Wall clock time and date at job start Wed Apr 1 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47177 * 270.00419 * 3 2 1 5 5 H 1.48497 * 109.46858 * 30.00130 * 3 2 1 6 6 H 1.48500 * 109.47245 * 150.00196 * 3 2 1 7 7 C 1.38815 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00047 * 197.85360 * 7 2 1 9 9 N 1.36935 * 120.00097 * 17.85295 * 7 2 1 10 10 C 1.46845 * 120.38528 * 208.90872 * 9 7 2 11 11 C 1.53352 * 108.81456 * 236.88353 * 10 9 7 12 12 C 1.53185 * 108.76423 * 308.68607 * 11 10 9 13 13 C 1.52845 * 117.65630 * 269.97938 * 12 11 10 14 14 C 1.52822 * 117.71290 * 201.12480 * 12 11 10 15 15 H 1.08996 * 117.49753 * 215.09731 * 14 12 11 16 16 N 1.46492 * 117.50099 * 0.13570 * 14 12 11 17 17 C 1.34774 * 120.00032 * 204.99582 * 16 14 12 18 18 O 1.21284 * 120.00154 * 0.02562 * 17 16 14 19 19 C 1.50696 * 120.00361 * 180.02562 * 17 16 14 20 20 H 1.09005 * 109.68122 * 300.00728 * 19 17 16 21 21 C 1.53398 * 109.68606 * 179.48669 * 19 17 16 22 22 C 1.53140 * 109.43902 * 190.66810 * 21 19 17 23 23 C 1.53354 * 109.56414 * 69.95642 * 22 21 19 24 24 C 1.50865 * 108.40737 * 310.01438 * 23 22 21 25 25 N 1.33582 * 128.03088 * 196.75357 * 24 23 22 26 26 C 1.30753 * 109.14511 * 179.91172 * 25 24 23 27 27 N 1.35316 * 108.76774 * 0.02562 * 26 25 24 28 28 H 0.96999 * 126.49578 * 180.02562 * 27 26 25 29 29 C 1.35030 * 123.98950 * 16.71164 * 24 23 22 30 30 C 1.53182 * 115.07729 * 55.45057 * 12 11 10 31 31 C 1.46847 * 120.38471 * 28.88690 * 9 7 2 32 32 H 0.97006 * 119.99482 * 359.97438 * 1 2 3 33 33 H 1.09001 * 109.58040 * 117.08835 * 10 9 7 34 34 H 1.08997 * 109.58238 * 356.68809 * 10 9 7 35 35 H 1.09003 * 109.58641 * 68.46804 * 11 10 9 36 36 H 1.09001 * 109.59035 * 188.90049 * 11 10 9 37 37 H 1.08999 * 117.50716 * 359.76433 * 13 12 11 38 38 H 1.09010 * 117.50100 * 144.81458 * 13 12 11 39 39 H 0.96996 * 120.00399 * 25.00359 * 16 14 12 40 40 H 1.09007 * 109.47217 * 310.62607 * 21 19 17 41 41 H 1.08999 * 109.47334 * 70.63852 * 21 19 17 42 42 H 1.08994 * 109.44092 * 309.92575 * 22 21 19 43 43 H 1.09001 * 109.44234 * 189.97590 * 22 21 19 44 44 H 1.09004 * 109.67323 * 190.28982 * 23 22 21 45 45 H 1.08993 * 109.67638 * 69.74314 * 23 22 21 46 46 H 1.08002 * 125.61499 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.59217 * 64.33306 * 30 12 11 48 48 H 1.09005 * 109.58957 * 184.76560 * 30 12 11 49 49 H 1.09002 * 109.57851 * 3.31223 * 31 9 7 50 50 H 1.09003 * 109.58041 * 242.91413 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0512 -1.2249 0.2862 9 7 1.3749 -2.3594 -0.3646 10 6 1.8050 -3.6491 0.1905 11 6 2.1664 -4.5893 -0.9658 12 6 1.0056 -4.6103 -1.9651 13 6 -0.0888 -5.6572 -1.7593 14 6 0.9055 -5.8048 -2.9131 15 1 0.5375 -5.6173 -3.9218 16 7 1.9270 -6.8484 -2.7965 17 6 2.2150 -7.6307 -3.8555 18 8 1.6289 -7.4705 -4.9051 19 6 3.2653 -8.7047 -3.7355 20 1 4.2232 -8.2539 -3.4758 21 6 3.3916 -9.4551 -5.0674 22 6 4.2555 -10.7039 -4.8689 23 6 3.4901 -11.7287 -4.0229 24 6 2.9606 -11.0318 -2.7941 25 7 2.5148 -11.5842 -1.6625 26 6 2.1454 -10.6375 -0.8397 27 7 2.3488 -9.4395 -1.4350 28 1 2.1633 -8.5670 -1.0538 29 6 2.8633 -9.6907 -2.6699 30 6 0.5855 -3.2382 -2.5011 31 6 0.2554 -2.3249 -1.3143 32 1 -0.4850 0.8401 0.0004 33 1 0.9941 -4.0838 0.7749 34 1 2.6774 -3.5003 0.8267 35 1 3.0684 -4.2296 -1.4609 36 1 2.3349 -5.5948 -0.5802 37 1 0.0170 -6.3366 -0.9135 38 1 -1.1110 -5.3725 -2.0090 39 1 2.3960 -6.9765 -1.9572 40 1 2.4009 -9.7503 -5.4135 41 1 3.8566 -8.8048 -5.8082 42 1 5.1787 -10.4290 -4.3589 43 1 4.4927 -11.1391 -5.8397 44 1 4.1614 -12.5349 -3.7270 45 1 2.6601 -12.1349 -4.6008 46 1 1.7441 -10.7872 0.1518 47 1 1.4023 -2.8058 -3.0790 48 1 -0.2951 -3.3472 -3.1343 49 1 0.1080 -1.3046 -1.6684 50 1 -0.6514 -2.6777 -0.8230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016823907.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:05 Heat of formation + Delta-G solvation = 38.930784 kcal Electronic energy + Delta-G solvation = -30693.786679 eV Core-core repulsion = 26721.658205 eV Total energy + Delta-G solvation = -3972.128474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.40773 -41.23263 -39.91435 -37.50572 -36.99668 -34.94302 -34.02358 -33.23553 -31.72504 -31.11730 -29.97882 -29.84529 -26.28452 -25.65726 -24.12112 -23.46059 -23.20467 -22.80186 -22.05959 -21.77228 -19.89679 -19.83526 -19.12203 -18.42849 -18.02725 -17.38857 -16.81499 -16.56870 -15.90387 -15.77688 -15.74347 -15.39663 -15.29592 -15.09268 -14.91048 -14.83792 -14.48780 -14.26093 -14.19783 -13.83999 -13.53029 -13.32061 -13.15256 -13.00053 -12.94043 -12.62358 -12.58175 -12.27904 -12.19590 -12.04211 -11.84806 -11.82693 -11.81489 -11.44641 -11.39890 -11.26496 -10.88486 -10.85670 -10.67535 -10.49979 -9.79242 -9.18156 -8.64544 -7.87970 -5.34056 0.92234 1.39073 1.45178 1.47432 1.55205 1.85556 2.09376 2.16132 2.50031 2.87197 3.26983 3.42191 3.49295 3.59082 3.70370 3.74574 3.78811 3.83089 3.92875 4.06957 4.08911 4.27791 4.33739 4.41825 4.48847 4.51611 4.56794 4.69475 4.69921 4.79997 4.84297 4.87649 4.98966 5.00148 5.00554 5.04499 5.10763 5.13888 5.18065 5.26342 5.27536 5.35608 5.36685 5.45435 5.53076 5.64355 5.74492 5.75542 6.28655 6.39664 6.41492 7.01891 7.07738 7.14989 7.87506 8.37734 9.17006 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.002358 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.641904 B =11870.584949 C =12191.048112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.962 3.038 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.066 0.934 9 N -0.608 5.608 10 C 0.145 3.855 11 C -0.083 4.083 12 C -0.112 4.112 13 C -0.169 4.169 14 C 0.084 3.916 15 H 0.119 0.881 16 N -0.688 5.688 17 C 0.519 3.481 18 O -0.566 6.566 19 C -0.019 4.019 20 H 0.134 0.866 21 C -0.095 4.095 22 C -0.108 4.108 23 C -0.039 4.039 24 C 0.000 4.000 25 N -0.525 5.525 26 C 0.193 3.807 27 N -0.554 5.554 28 H 0.425 0.575 29 C -0.035 4.035 30 C -0.095 4.095 31 C 0.181 3.819 32 H 0.249 0.751 33 H 0.019 0.981 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.404 0.596 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.244 0.756 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.715 -22.596 -5.448 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.791 3.209 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.019 3.981 11 C -0.122 4.122 12 C -0.114 4.114 13 C -0.207 4.207 14 C -0.022 4.022 15 H 0.137 0.863 16 N -0.339 5.339 17 C 0.307 3.693 18 O -0.443 6.443 19 C -0.042 4.042 20 H 0.152 0.848 21 C -0.133 4.133 22 C -0.146 4.146 23 C -0.077 4.077 24 C -0.130 4.130 25 N -0.244 5.244 26 C -0.090 4.090 27 N -0.159 5.159 28 H 0.266 0.734 29 C -0.152 4.152 30 C -0.134 4.134 31 C 0.055 3.945 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.242 0.758 40 H 0.077 0.923 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.114 0.886 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.260 0.740 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 7.184 -23.237 -6.017 25.055 hybrid contribution -0.147 2.668 0.754 2.776 sum 7.037 -20.569 -5.263 22.368 Atomic orbital electron populations 1.70175 1.06645 1.25793 1.55281 1.25766 0.95962 1.01440 1.01370 0.85342 0.78256 0.79863 0.77460 1.21455 1.22276 1.19225 1.19506 0.93080 0.86318 1.40287 0.91661 1.44224 1.37834 1.02439 1.48584 1.21009 0.97252 0.85929 0.93896 1.21464 0.95727 0.99479 0.95500 1.21802 0.99334 0.90397 0.99835 1.23629 0.95857 1.01315 0.99945 1.21661 0.93343 0.90608 0.96623 0.86304 1.45411 1.39882 1.34049 1.14546 1.21017 0.83345 0.81905 0.83073 1.90702 1.53003 1.71068 1.29571 1.19969 0.97950 0.91224 0.95033 0.84835 1.21437 1.01437 0.97117 0.93345 1.21599 0.98065 0.93786 1.01118 1.20074 0.99602 0.97644 0.90357 1.20943 1.05314 0.90294 0.96426 1.70032 1.17903 1.33371 1.03089 1.25817 1.03156 0.78719 1.01294 1.43067 1.48824 1.10954 1.13009 0.73410 1.20482 1.09850 0.96267 0.88600 1.21628 0.99884 0.93957 0.97914 1.20522 0.88140 0.97600 0.88276 0.94157 0.96284 0.92631 0.92352 0.89721 0.86919 0.88280 0.75829 0.92267 0.89639 0.90412 0.88637 0.89811 0.90846 0.73987 0.93334 0.91692 0.92938 0.98210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.48 11.23 21.65 0.24 -54.24 16 2 C -0.05 -2.74 4.89 84.86 0.41 -2.32 16 3 Si 0.96 44.25 29.59 68.60 2.03 46.28 16 4 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 7 C -0.26 -13.98 9.54 84.03 0.80 -13.18 16 8 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 9 N -0.61 -29.09 2.94 -698.88 -2.05 -31.14 16 10 C 0.14 5.37 6.51 86.43 0.56 5.93 16 11 C -0.08 -2.28 5.37 30.77 0.17 -2.12 16 12 C -0.11 -3.21 1.94 -52.17 -0.10 -3.31 16 13 C -0.17 -4.02 9.86 30.55 0.30 -3.72 16 14 C 0.08 2.06 6.14 44.94 0.28 2.34 16 15 H 0.12 3.42 7.40 -2.39 -0.02 3.40 16 16 N -0.69 -13.40 4.89 -442.79 -2.17 -15.57 16 17 C 0.52 11.60 7.14 87.66 0.63 12.23 16 18 O -0.57 -17.32 15.40 -3.04 -0.05 -17.37 16 19 C -0.02 -0.32 2.90 -12.17 -0.04 -0.35 16 20 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 21 C -0.09 -1.49 4.68 30.77 0.14 -1.34 16 22 C -0.11 -1.23 5.89 30.76 0.18 -1.05 16 23 C -0.04 -0.59 6.30 30.02 0.19 -0.40 16 24 C 0.00 0.00 6.98 41.61 0.29 0.29 16 25 N -0.52 -11.29 11.25 -187.88 -2.11 -13.40 16 26 C 0.19 2.89 13.05 180.10 2.35 5.24 16 27 N -0.55 -7.63 5.90 -186.45 -1.10 -8.73 16 28 H 0.43 3.98 6.81 -92.71 -0.63 3.35 16 29 C -0.04 -0.61 6.32 41.14 0.26 -0.35 16 30 C -0.09 -3.43 5.83 30.77 0.18 -3.25 16 31 C 0.18 8.42 5.40 86.43 0.47 8.89 16 32 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 33 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 2.02 7.92 -2.39 -0.02 2.00 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.58 6.75 -2.39 -0.02 1.56 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 39 H 0.40 5.69 5.16 -92.71 -0.48 5.21 16 40 H 0.06 1.19 7.74 -2.38 -0.02 1.17 16 41 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 42 H 0.08 0.76 8.11 -2.39 -0.02 0.74 16 43 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 46 H 0.24 1.58 8.06 -2.91 -0.02 1.56 16 47 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.06 2.15 8.10 -2.38 -0.02 2.13 16 49 H 0.05 2.84 5.93 -2.39 -0.01 2.82 16 50 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 Total: -1.00 -73.50 389.01 1.72 -71.78 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.14 Total: 18.87 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 7.07 Total: 3.52 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -7.19 Total: -123.08 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.05 Total: -17.37 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -73.50 1.72 -71.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016823907.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.710 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds