Wall clock time and date at job start Wed Apr 1 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38545 * 120.01408 * 2 1 4 4 C 1.40077 * 117.81798 * 179.70983 * 3 2 1 5 5 C 1.48133 * 121.14689 * 180.27197 * 4 3 2 6 6 O 1.21521 * 119.99757 * 227.82967 * 5 4 3 7 7 N 1.34779 * 120.00537 * 47.82757 * 5 4 3 8 8 C 1.46939 * 120.84036 * 5.14526 * 7 5 4 9 9 C 1.53620 * 108.77218 * 125.93924 * 8 7 5 10 10 C 1.53116 * 109.39857 * 54.31286 * 9 8 7 11 11 C 1.52852 * 109.34407 * 299.20981 * 10 9 8 12 12 H 1.08997 * 108.59293 * 302.89210 * 11 10 9 13 13 C 1.52772 * 110.21709 * 183.24925 * 11 10 9 14 14 N 1.46886 * 109.19646 * 292.63506 * 13 11 10 15 15 C 1.36934 * 120.77253 * 126.64092 * 14 13 11 16 16 H 1.08004 * 120.00365 * 207.92446 * 15 14 13 17 17 C 1.38815 * 120.00226 * 27.93509 * 15 14 13 18 18 N 1.31623 * 119.99518 * 20.11487 * 17 15 14 19 19 Si 1.86798 * 120.00380 * 200.12524 * 17 15 14 20 20 H 1.48498 * 109.47233 * 89.99175 * 19 17 15 21 21 H 1.48499 * 109.47030 * 209.99696 * 19 17 15 22 22 H 1.48500 * 109.46757 * 329.99562 * 19 17 15 23 23 C 1.46975 * 118.45899 * 306.66711 * 14 13 11 24 24 C 1.53099 * 108.61792 * 54.30546 * 23 14 13 25 25 C 1.47305 * 120.84542 * 185.42645 * 7 5 4 26 26 H 1.09005 * 110.06701 * 355.79374 * 25 7 5 27 27 C 1.39762 * 117.70253 * 0.52144 * 4 3 2 28 28 C 1.50710 * 120.16978 * 179.74397 * 27 4 3 29 29 N 1.31892 * 119.65805 * 359.47283 * 27 4 3 30 30 N 1.28273 * 122.32831 * 0.27017 * 29 27 4 31 31 H 1.09000 * 109.47013 * 270.01856 * 1 2 3 32 32 H 1.09003 * 109.47023 * 30.01791 * 1 2 3 33 33 H 1.09002 * 109.46993 * 150.01983 * 1 2 3 34 34 H 1.08000 * 121.09442 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.54938 * 245.84694 * 8 7 5 36 36 H 1.09000 * 109.54742 * 6.12168 * 8 7 5 37 37 H 1.09000 * 109.61436 * 294.26363 * 9 8 7 38 38 H 1.08997 * 109.39553 * 174.22035 * 9 8 7 39 39 H 1.09003 * 109.49223 * 179.25358 * 10 9 8 40 40 H 1.08999 * 109.51956 * 59.18853 * 10 9 8 41 41 H 1.08997 * 109.51802 * 172.71547 * 13 11 10 42 42 H 1.09010 * 109.55931 * 52.57334 * 13 11 10 43 43 H 0.97005 * 119.99653 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.60570 * 294.57288 * 23 14 13 45 45 H 1.08994 * 109.61381 * 174.05171 * 23 14 13 46 46 H 1.09000 * 109.45547 * 184.61867 * 24 23 14 47 47 H 1.09004 * 109.43050 * 64.67480 * 24 23 14 48 48 H 1.09003 * 109.46512 * 273.24890 * 28 27 4 49 49 H 1.09004 * 109.46834 * 153.25174 * 28 27 4 50 50 H 1.08990 * 109.46843 * 33.24615 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 0.0063 5 6 4.4140 2.3835 0.0127 6 8 5.3417 2.5044 -0.7628 7 7 4.1259 3.3753 0.8786 8 6 3.0819 3.2052 1.8986 9 6 3.6829 3.5162 3.2778 10 6 4.3233 4.9068 3.2516 11 6 5.4395 4.9306 2.2077 12 1 6.1585 4.1480 2.4497 13 6 6.1459 6.2852 2.2210 14 7 5.2183 7.3184 1.7419 15 6 4.9788 8.4437 2.4844 16 1 4.0319 8.9560 2.3986 17 6 5.9532 8.9262 3.3474 18 7 7.2110 8.5756 3.1818 19 14 5.4793 10.0729 4.7438 20 1 5.1567 9.2735 5.9530 21 1 6.6126 10.9853 5.0413 22 1 4.2919 10.8715 4.3471 23 6 4.5526 7.1161 0.4472 24 6 3.8409 5.7608 0.4701 25 6 4.8452 4.6596 0.8226 26 1 5.6314 4.6153 0.0687 27 6 4.2017 -0.1154 0.0008 28 6 5.7038 -0.2379 0.0013 29 7 3.4483 -1.1980 0.0007 30 7 2.1668 -1.1419 0.0003 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6783 2.1452 -0.0004 35 1 2.2577 3.8886 1.6944 36 1 2.7185 2.1778 1.8807 37 1 4.4404 2.7718 3.5230 38 1 2.8943 3.4935 4.0298 39 1 4.7386 5.1344 4.2334 40 1 3.5689 5.6503 2.9946 41 1 7.0179 6.2476 1.5680 42 1 6.4617 6.5221 3.2371 43 1 7.8918 8.9124 3.7851 44 1 5.2946 7.1262 -0.3511 45 1 3.8236 7.9095 0.2828 46 1 3.4112 5.5598 -0.5113 47 1 3.0470 5.7806 1.2168 48 1 6.0713 -0.2046 -1.0243 49 1 5.9910 -1.1842 0.4597 50 1 6.1353 0.5865 0.5688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021594218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:53 Heat of formation + Delta-G solvation = 42.350311 kcal Electronic energy + Delta-G solvation = -31767.655632 eV Core-core repulsion = 27795.675440 eV Total energy + Delta-G solvation = -3971.980192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.71255 -40.26914 -38.23352 -35.77215 -34.77856 -33.96683 -32.74802 -32.48741 -30.48650 -30.14438 -29.43467 -27.12929 -25.96656 -25.68578 -24.34394 -23.27126 -22.39606 -22.10495 -21.44653 -19.70050 -18.09307 -17.95476 -17.33101 -16.80945 -16.27123 -15.96326 -15.60174 -15.16584 -14.93179 -14.64615 -14.37176 -14.01475 -13.77344 -13.74114 -13.64382 -13.43726 -13.13669 -13.00393 -12.82806 -12.69790 -12.62252 -12.49892 -12.42828 -12.34396 -11.65889 -11.30253 -11.25118 -11.11208 -10.81417 -10.74345 -10.58992 -10.53620 -10.33938 -10.17891 -10.14845 -10.06041 -9.80757 -9.75131 -9.66364 -9.47850 -8.59110 -8.44041 -6.76312 -5.86818 -3.27522 0.16449 0.52987 2.45016 2.78113 3.19989 3.32559 3.40391 3.41397 3.61512 3.96005 4.05916 4.16768 4.43433 4.44905 4.72619 4.75232 4.93141 4.98811 5.05859 5.13516 5.19044 5.26349 5.33348 5.33931 5.35957 5.40303 5.42902 5.45283 5.53502 5.61882 5.72681 5.75311 5.80159 5.93339 5.95292 5.98300 6.08109 6.20759 6.28838 6.33628 6.38082 6.57975 6.67579 6.74708 6.84280 6.91814 7.19833 7.32889 7.52155 7.73962 7.96686 8.36248 8.39248 9.12747 9.76463 10.34042 11.22041 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.002934 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.295186 B = 9541.884640 C = 9920.024215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.058 3.942 3 C -0.085 4.085 4 C -0.115 4.115 5 C 0.560 3.440 6 O -0.522 6.522 7 N -0.593 5.593 8 C 0.101 3.899 9 C -0.134 4.134 10 C -0.105 4.105 11 C -0.114 4.114 12 H 0.057 0.943 13 C 0.179 3.821 14 N -0.587 5.587 15 C -0.254 4.254 16 H 0.066 0.934 17 C 0.006 3.994 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.147 3.853 24 C -0.142 4.142 25 C 0.155 3.845 26 H 0.098 0.902 27 C 0.108 3.892 28 C -0.100 4.100 29 N -0.239 5.239 30 N -0.230 5.230 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.021 0.979 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.524 -15.246 -3.419 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.086 4.086 3 C -0.114 4.114 4 C -0.130 4.130 5 C 0.346 3.654 6 O -0.399 6.399 7 N -0.324 5.324 8 C -0.022 4.022 9 C -0.172 4.172 10 C -0.142 4.142 11 C -0.135 4.135 12 H 0.076 0.924 13 C 0.053 3.947 14 N -0.310 5.310 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.020 3.980 24 C -0.182 4.182 25 C 0.054 3.946 26 H 0.116 0.884 27 C -0.036 4.036 28 C -0.158 4.158 29 N -0.081 5.081 30 N -0.073 5.073 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.173 0.827 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.039 0.961 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.085 0.915 48 H 0.111 0.889 49 H 0.101 0.899 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.936 -16.747 -3.737 20.347 hybrid contribution -0.196 2.138 0.802 2.292 sum -11.132 -14.608 -2.935 18.599 Atomic orbital electron populations 1.20692 0.86941 1.04277 1.03871 1.22848 0.99277 0.89891 0.96618 1.22552 0.93087 1.00575 0.95204 1.21210 0.94707 0.95843 1.01208 1.17934 0.83760 0.82235 0.81520 1.90815 1.29032 1.79934 1.40105 1.48517 1.37753 1.14689 1.31477 1.22014 0.90485 1.01298 0.88406 1.22049 1.00516 0.99376 0.95280 1.21461 0.98659 0.94779 0.99337 1.22016 0.97434 1.01146 0.92904 0.92413 1.20655 0.89918 0.83005 1.01161 1.44032 1.50835 1.19310 1.16805 1.19121 0.97416 1.03482 1.18366 0.91647 1.25014 0.94627 0.98440 1.01244 1.70068 0.99127 1.47542 1.37405 0.86356 0.77549 0.80352 0.82926 1.21441 1.21816 1.20430 1.20855 0.95068 0.92989 0.89067 1.22438 0.98700 0.96937 1.00085 1.21489 0.94505 0.79566 0.99049 0.88391 1.23022 0.99485 0.88559 0.92565 1.20739 0.86604 1.03940 1.04541 1.73021 0.98974 1.26182 1.09950 1.72795 1.01747 1.24896 1.07858 0.89608 0.90079 0.89738 0.82657 0.90738 0.90795 0.92073 0.91099 0.91831 0.90377 0.96056 0.89350 0.93566 0.96153 0.92339 0.93056 0.91513 0.88903 0.89872 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.19 36.01 0.37 -0.22 16 2 C 0.06 0.57 6.86 -82.46 -0.57 0.00 16 3 C -0.08 -0.83 7.40 -38.78 -0.29 -1.12 16 4 C -0.12 -1.42 4.89 -104.58 -0.51 -1.93 16 5 C 0.56 8.04 6.48 -12.20 -0.08 7.96 16 6 O -0.52 -9.09 15.24 5.35 0.08 -9.01 16 7 N -0.59 -8.08 2.66 -165.60 -0.44 -8.52 16 8 C 0.10 1.11 4.88 -3.48 -0.02 1.09 16 9 C -0.13 -1.61 6.10 -26.35 -0.16 -1.77 16 10 C -0.10 -1.64 4.86 -26.75 -0.13 -1.77 16 11 C -0.11 -1.99 2.45 -90.74 -0.22 -2.21 16 12 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 13 C 0.18 3.96 4.72 -3.95 -0.02 3.95 16 14 N -0.59 -13.53 2.64 -172.62 -0.46 -13.98 16 15 C -0.25 -6.52 9.57 -15.06 -0.14 -6.66 16 16 H 0.07 1.66 7.91 -52.48 -0.42 1.24 16 17 C 0.01 0.16 4.83 -17.43 -0.08 0.08 16 18 N -0.90 -25.04 11.40 55.49 0.63 -24.41 16 19 Si 0.90 20.76 29.60 -169.99 -5.03 15.73 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.15 2.87 6.51 -3.73 -0.02 2.85 16 24 C -0.14 -2.25 5.01 -26.60 -0.13 -2.39 16 25 C 0.15 2.52 2.66 -67.34 -0.18 2.34 16 26 H 0.10 1.80 7.05 -51.93 -0.37 1.44 16 27 C 0.11 1.38 6.90 -81.99 -0.57 0.81 16 28 C -0.10 -1.12 9.16 36.01 0.33 -0.79 16 29 N -0.24 -3.23 11.42 33.81 0.39 -2.84 16 30 N -0.23 -2.89 11.40 33.58 0.38 -2.51 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.16 1.15 7.39 -52.49 -0.39 0.77 16 35 H 0.07 0.74 7.23 -51.93 -0.38 0.37 16 36 H 0.07 0.71 5.08 -51.93 -0.26 0.44 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.33 6.15 -51.93 -0.32 1.01 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 2.20 6.16 -51.92 -0.32 1.88 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 1.03 5.31 -51.93 -0.28 0.76 16 48 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.08 0.98 6.99 -51.93 -0.36 0.62 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -30.41 382.36 -8.81 -39.22 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.70 Total: 0.34 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.43 Total: 0.21 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.51 Total: -52.25 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.41 -8.81 -39.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021594218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.574 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds