Wall clock time and date at job start Wed Apr 1 2020 03:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38545 * 120.01408 * 2 1 4 4 C 1.40077 * 117.81798 * 179.70983 * 3 2 1 5 5 C 1.48133 * 121.14689 * 180.27197 * 4 3 2 6 6 O 1.21521 * 119.99757 * 227.82967 * 5 4 3 7 7 N 1.34779 * 120.00537 * 47.82757 * 5 4 3 8 8 C 1.46939 * 120.84036 * 5.14526 * 7 5 4 9 9 C 1.53620 * 108.77218 * 125.93924 * 8 7 5 10 10 C 1.53116 * 109.39857 * 54.31286 * 9 8 7 11 11 C 1.52852 * 109.34407 * 299.20981 * 10 9 8 12 12 H 1.08997 * 108.59293 * 302.89210 * 11 10 9 13 13 C 1.52772 * 110.21709 * 183.24925 * 11 10 9 14 14 N 1.46886 * 109.19646 * 292.63506 * 13 11 10 15 15 C 1.36934 * 120.77253 * 126.64092 * 14 13 11 16 16 H 1.08004 * 120.00365 * 207.92446 * 15 14 13 17 17 C 1.38815 * 120.00226 * 27.93509 * 15 14 13 18 18 N 1.31623 * 119.99518 * 20.11487 * 17 15 14 19 19 Si 1.86798 * 120.00380 * 200.12524 * 17 15 14 20 20 H 1.48498 * 109.47233 * 89.99175 * 19 17 15 21 21 H 1.48499 * 109.47030 * 209.99696 * 19 17 15 22 22 H 1.48500 * 109.46757 * 329.99562 * 19 17 15 23 23 C 1.46975 * 118.45899 * 306.66711 * 14 13 11 24 24 C 1.53099 * 108.61792 * 54.30546 * 23 14 13 25 25 C 1.47305 * 120.84542 * 185.42645 * 7 5 4 26 26 H 1.09005 * 110.06701 * 355.79374 * 25 7 5 27 27 C 1.39762 * 117.70253 * 0.52144 * 4 3 2 28 28 C 1.50710 * 120.16978 * 179.74397 * 27 4 3 29 29 N 1.31892 * 119.65805 * 359.47283 * 27 4 3 30 30 N 1.28273 * 122.32831 * 0.27017 * 29 27 4 31 31 H 1.09000 * 109.47013 * 270.01856 * 1 2 3 32 32 H 1.09003 * 109.47023 * 30.01791 * 1 2 3 33 33 H 1.09002 * 109.46993 * 150.01983 * 1 2 3 34 34 H 1.08000 * 121.09442 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.54938 * 245.84694 * 8 7 5 36 36 H 1.09000 * 109.54742 * 6.12168 * 8 7 5 37 37 H 1.09000 * 109.61436 * 294.26363 * 9 8 7 38 38 H 1.08997 * 109.39553 * 174.22035 * 9 8 7 39 39 H 1.09003 * 109.49223 * 179.25358 * 10 9 8 40 40 H 1.08999 * 109.51956 * 59.18853 * 10 9 8 41 41 H 1.08997 * 109.51802 * 172.71547 * 13 11 10 42 42 H 1.09010 * 109.55931 * 52.57334 * 13 11 10 43 43 H 0.97005 * 119.99653 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.60570 * 294.57288 * 23 14 13 45 45 H 1.08994 * 109.61381 * 174.05171 * 23 14 13 46 46 H 1.09000 * 109.45547 * 184.61867 * 24 23 14 47 47 H 1.09004 * 109.43050 * 64.67480 * 24 23 14 48 48 H 1.09003 * 109.46512 * 273.24890 * 28 27 4 49 49 H 1.09004 * 109.46834 * 153.25174 * 28 27 4 50 50 H 1.08990 * 109.46843 * 33.24615 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2001 1.1997 0.0000 4 6 3.5998 1.1460 0.0063 5 6 4.4140 2.3835 0.0127 6 8 5.3417 2.5044 -0.7628 7 7 4.1259 3.3753 0.8786 8 6 3.0819 3.2052 1.8986 9 6 3.6829 3.5162 3.2778 10 6 4.3233 4.9068 3.2516 11 6 5.4395 4.9306 2.2077 12 1 6.1585 4.1480 2.4497 13 6 6.1459 6.2852 2.2210 14 7 5.2183 7.3184 1.7419 15 6 4.9788 8.4437 2.4844 16 1 4.0319 8.9560 2.3986 17 6 5.9532 8.9262 3.3474 18 7 7.2110 8.5756 3.1818 19 14 5.4793 10.0729 4.7438 20 1 5.1567 9.2735 5.9530 21 1 6.6126 10.9853 5.0413 22 1 4.2919 10.8715 4.3471 23 6 4.5526 7.1161 0.4472 24 6 3.8409 5.7608 0.4701 25 6 4.8452 4.6596 0.8226 26 1 5.6314 4.6153 0.0687 27 6 4.2017 -0.1154 0.0008 28 6 5.7038 -0.2379 0.0013 29 7 3.4483 -1.1980 0.0007 30 7 2.1668 -1.1419 0.0003 31 1 -0.3633 0.0003 1.0277 32 1 -0.3633 0.8898 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6783 2.1452 -0.0004 35 1 2.2577 3.8886 1.6944 36 1 2.7185 2.1778 1.8807 37 1 4.4404 2.7718 3.5230 38 1 2.8943 3.4935 4.0298 39 1 4.7386 5.1344 4.2334 40 1 3.5689 5.6503 2.9946 41 1 7.0179 6.2476 1.5680 42 1 6.4617 6.5221 3.2371 43 1 7.8918 8.9124 3.7851 44 1 5.2946 7.1262 -0.3511 45 1 3.8236 7.9095 0.2828 46 1 3.4112 5.5598 -0.5113 47 1 3.0470 5.7806 1.2168 48 1 6.0713 -0.2046 -1.0243 49 1 5.9910 -1.1842 0.4597 50 1 6.1353 0.5865 0.5688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021594218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:52 Heat of formation + Delta-G solvation = 24.703292 kcal Electronic energy + Delta-G solvation = -31768.420864 eV Core-core repulsion = 27795.675440 eV Total energy + Delta-G solvation = -3972.745424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.64123 -41.42831 -39.54750 -37.20662 -35.57746 -35.06638 -34.13675 -33.91208 -31.91657 -31.27939 -30.68862 -27.93129 -27.35739 -27.00451 -25.50663 -24.42993 -23.57056 -23.47923 -22.84813 -20.90094 -19.50892 -18.93203 -18.56431 -18.23667 -17.36625 -16.96778 -16.83427 -16.50370 -16.15864 -15.90241 -15.69496 -15.25144 -15.07459 -14.96515 -14.60176 -14.44102 -14.35501 -14.22565 -14.05453 -13.84058 -13.62130 -13.47912 -13.34591 -13.22667 -13.09912 -12.94472 -12.63241 -12.51070 -12.27747 -12.11470 -11.99141 -11.89091 -11.81960 -11.55721 -11.53869 -11.37550 -11.12550 -11.05595 -10.61257 -10.55906 -10.51221 -9.69365 -8.69008 -7.86691 -5.29850 -0.71603 -0.27700 1.37454 1.48503 1.50433 1.58572 1.68468 2.32789 2.52933 2.82553 3.03223 3.22621 3.28995 3.38596 3.61744 3.67804 3.77786 3.87760 3.93504 4.00539 4.03040 4.17937 4.23262 4.36082 4.37079 4.42045 4.48130 4.54342 4.59352 4.72160 4.74312 4.77667 4.81099 4.81289 4.87227 4.97320 5.02422 5.04419 5.07196 5.09637 5.11753 5.18854 5.31264 5.32178 5.41198 5.49725 5.58503 5.66713 5.70409 6.23904 6.39227 6.85752 7.15063 7.54032 7.85819 8.39732 9.20516 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020777 B = 0.002934 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.295186 B = 9541.884640 C = 9920.024215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.065 3.935 3 C -0.068 4.068 4 C -0.128 4.128 5 C 0.564 3.436 6 O -0.561 6.561 7 N -0.588 5.588 8 C 0.099 3.901 9 C -0.126 4.126 10 C -0.098 4.098 11 C -0.104 4.104 12 H 0.052 0.948 13 C 0.190 3.810 14 N -0.600 5.600 15 C -0.254 4.254 16 H 0.072 0.928 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.961 3.039 20 H -0.285 1.285 21 H -0.302 1.302 22 H -0.266 1.266 23 C 0.142 3.858 24 C -0.124 4.124 25 C 0.164 3.836 26 H 0.070 0.930 27 C 0.097 3.903 28 C -0.097 4.097 29 N -0.262 5.262 30 N -0.255 5.255 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.189 0.811 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.046 0.954 40 H 0.070 0.930 41 H -0.015 1.015 42 H 0.055 0.945 43 H 0.248 0.752 44 H 0.006 0.994 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.748 -16.096 -3.093 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.142 4.142 5 C 0.351 3.649 6 O -0.440 6.440 7 N -0.319 5.319 8 C -0.023 4.023 9 C -0.164 4.164 10 C -0.135 4.135 11 C -0.125 4.125 12 H 0.071 0.929 13 C 0.063 3.937 14 N -0.323 5.323 15 C -0.384 4.384 16 H 0.090 0.910 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.789 3.211 20 H -0.211 1.211 21 H -0.229 1.229 22 H -0.191 1.191 23 C 0.016 3.984 24 C -0.164 4.164 25 C 0.061 3.939 26 H 0.089 0.911 27 C -0.048 4.048 28 C -0.155 4.155 29 N -0.103 5.103 30 N -0.097 5.097 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.103 0.897 34 H 0.206 0.794 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.003 0.997 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.024 0.976 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.107 0.893 49 H 0.114 0.886 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.210 -17.632 -3.414 23.535 hybrid contribution 1.098 2.408 0.634 2.721 sum -14.112 -15.224 -2.779 20.944 Atomic orbital electron populations 1.20884 0.83823 1.05588 1.05401 1.23464 1.01073 0.88913 0.94531 1.22920 0.91793 1.02032 0.92987 1.21020 0.95747 0.94349 1.03127 1.18187 0.83293 0.82644 0.80797 1.90801 1.30797 1.80667 1.41717 1.48406 1.37986 1.13406 1.32058 1.22294 0.89964 1.03410 0.86604 1.21995 1.01110 0.96276 0.97012 1.21353 0.97509 0.97306 0.97355 1.21778 0.97993 0.97736 0.95006 0.92923 1.20368 0.89486 0.85600 0.98206 1.44237 1.50937 1.18992 1.18159 1.19461 0.97275 1.03644 1.17994 0.91041 1.25738 0.94536 1.00493 1.03598 1.70228 1.00110 1.49459 1.38350 0.85362 0.77065 0.78467 0.80157 1.21143 1.22924 1.19078 1.21002 0.94834 0.95630 0.86915 1.22228 0.98187 0.94075 1.01877 1.21094 0.94365 0.81411 0.97022 0.91147 1.23120 0.99801 0.88853 0.93044 1.20695 0.86416 1.04117 1.04264 1.72989 0.99708 1.26605 1.11006 1.72733 1.01486 1.26651 1.08847 0.87743 0.87524 0.89723 0.79378 0.88198 0.88509 0.92450 0.88107 0.93552 0.91108 0.99708 0.92618 0.94293 0.97593 0.91608 0.90743 0.89927 0.89251 0.88597 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.19 71.24 0.73 0.04 16 2 C 0.07 1.03 6.86 42.63 0.29 1.32 16 3 C -0.07 -1.05 7.40 22.79 0.17 -0.88 16 4 C -0.13 -2.87 4.89 -19.83 -0.10 -2.97 16 5 C 0.56 15.37 6.48 86.87 0.56 15.93 16 6 O -0.56 -19.64 15.24 -3.78 -0.06 -19.70 16 7 N -0.59 -14.67 2.66 -796.11 -2.11 -16.79 16 8 C 0.10 1.73 4.88 86.50 0.42 2.15 16 9 C -0.13 -2.59 6.10 30.84 0.19 -2.40 16 10 C -0.10 -2.93 4.86 30.58 0.15 -2.78 16 11 C -0.10 -3.70 2.45 -10.87 -0.03 -3.72 16 12 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 13 C 0.19 8.85 4.72 86.23 0.41 9.26 16 14 N -0.60 -28.16 2.64 -700.05 -1.85 -30.00 16 15 C -0.25 -13.07 9.57 84.03 0.80 -12.27 16 16 H 0.07 3.55 7.91 -2.91 -0.02 3.53 16 17 C -0.05 -2.58 4.83 84.86 0.41 -2.17 16 18 N -0.94 -54.45 11.40 21.65 0.25 -54.20 16 19 Si 0.96 43.19 29.60 68.60 2.03 45.22 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.14 5.49 6.51 86.32 0.56 6.05 16 24 C -0.12 -3.68 5.01 30.68 0.15 -3.52 16 25 C 0.16 5.21 2.66 44.94 0.12 5.32 16 26 H 0.07 2.66 7.05 -2.38 -0.02 2.65 16 27 C 0.10 2.38 6.90 42.92 0.30 2.68 16 28 C -0.10 -2.19 9.16 71.24 0.65 -1.54 16 29 N -0.26 -6.77 11.42 -46.94 -0.54 -7.30 16 30 N -0.26 -5.86 11.40 -47.69 -0.54 -6.40 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 0.25 8.09 -2.39 -0.02 0.23 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.19 1.62 7.39 -2.91 -0.02 1.59 16 35 H 0.10 1.35 7.23 -2.39 -0.02 1.34 16 36 H 0.10 1.34 5.08 -2.39 -0.01 1.33 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 2.24 6.15 -2.39 -0.01 2.23 16 41 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.06 2.95 6.16 -2.38 -0.01 2.93 16 43 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 44 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 45 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.08 2.24 5.31 -2.38 -0.01 2.22 16 48 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 50 H 0.07 1.74 6.99 -2.39 -0.02 1.73 16 Total: -1.00 -70.45 382.36 3.92 -66.53 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.95 Total: 12.15 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.79 Total: 10.50 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -4.79 Total: -114.70 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.06 Total: -19.70 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -70.45 3.92 -66.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021594218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.229 kcal (2) G-P(sol) polarization free energy of solvation -70.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds