Wall clock time and date at job start Wed Apr 1 2020 03:35:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.31926 * 120.17021 * 2 1
4 4 N 1.28277 * 122.32051 * 180.02562 * 3 2 1
5 5 C 1.31916 * 122.52059 * 359.97438 * 4 3 2
6 6 C 1.38503 * 119.96785 * 359.72157 * 5 4 3
7 7 C 1.39722 * 120.17316 * 180.02562 * 2 1 3
8 8 C 1.48146 * 121.14366 * 359.97364 * 7 2 1
9 9 O 1.21511 * 119.99746 * 307.17262 * 8 7 2
10 10 N 1.34779 * 119.99592 * 127.17244 * 8 7 2
11 11 C 1.46921 * 120.63075 * 0.59808 * 10 8 7
12 12 C 1.53190 * 108.77452 * 126.37348 * 11 10 8
13 13 C 1.53109 * 109.33312 * 54.63286 * 12 11 10
14 14 C 1.53045 * 109.50157 * 298.66210 * 13 12 11
15 15 C 1.46926 * 120.62645 * 180.58183 * 10 8 7
16 16 H 1.08994 * 109.70728 * 113.77080 * 15 10 8
17 17 C 1.52999 * 109.58781 * 353.41336 * 15 10 8
18 18 H 1.09001 * 109.87392 * 54.03490 * 17 15 10
19 19 C 1.54329 * 109.88159 * 293.01842 * 17 15 10
20 20 C 1.55406 * 102.82562 * 218.48162 * 19 17 15
21 21 C 1.54906 * 101.66902 * 35.34043 * 20 19 17
22 22 N 1.47022 * 109.88244 * 175.05341 * 17 15 10
23 23 C 1.36933 * 125.64450 * 298.32105 * 22 17 15
24 24 H 1.08001 * 120.00232 * 356.44263 * 23 22 17
25 25 C 1.38814 * 120.00038 * 176.44900 * 23 22 17
26 26 N 1.31627 * 119.99860 * 0.02562 * 25 23 22
27 27 Si 1.86799 * 120.00240 * 179.97438 * 25 23 22
28 28 H 1.48504 * 109.46730 * 60.00307 * 27 25 23
29 29 H 1.48505 * 109.46980 * 179.97438 * 27 25 23
30 30 H 1.48495 * 109.47367 * 300.00469 * 27 25 23
31 31 H 1.09000 * 109.46517 * 274.12864 * 1 2 3
32 32 H 1.08995 * 109.46905 * 34.12586 * 1 2 3
33 33 H 1.08991 * 109.47081 * 154.12835 * 1 2 3
34 34 H 1.08001 * 120.01823 * 180.02562 * 5 4 3
35 35 H 1.08000 * 121.08963 * 180.30737 * 6 5 4
36 36 H 1.09005 * 109.58881 * 246.15697 * 11 10 8
37 37 H 1.08993 * 109.59284 * 6.44242 * 11 10 8
38 38 H 1.09004 * 109.50133 * 174.58535 * 12 11 10
39 39 H 1.08999 * 109.49654 * 294.68109 * 12 11 10
40 40 H 1.08997 * 109.50489 * 178.63137 * 13 12 11
41 41 H 1.09004 * 109.45039 * 58.65091 * 13 12 11
42 42 H 1.09003 * 109.49088 * 301.37664 * 14 13 12
43 43 H 1.09000 * 109.49462 * 181.31463 * 14 13 12
44 44 H 1.08997 * 110.72358 * 336.75484 * 19 17 15
45 45 H 1.08997 * 110.72003 * 100.02805 * 19 17 15
46 46 H 1.08997 * 110.89172 * 277.26335 * 20 19 17
47 47 H 1.09007 * 111.03199 * 153.47283 * 20 19 17
48 48 H 1.08996 * 110.37032 * 204.23755 * 21 20 19
49 49 H 1.09004 * 110.36775 * 81.90941 * 21 20 19
50 50 H 0.97001 * 119.99874 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1700 1.1405 0.0000
4 7 3.4519 1.1887 -0.0005
5 6 4.2023 0.1038 -0.0005
6 6 3.6091 -1.1478 0.0058
7 6 2.2093 -1.2079 -0.0005
8 6 1.4982 -2.5076 -0.0005
9 8 0.6492 -2.7355 0.8383
10 7 1.7932 -3.4370 -0.9310
11 6 2.8265 -3.1810 -1.9435
12 6 3.8421 -4.3274 -1.9124
13 6 3.1080 -5.6597 -2.0863
14 6 2.1227 -5.8547 -0.9315
15 6 1.0877 -4.7256 -0.9516
16 1 0.4838 -4.7996 -1.8560
17 6 0.1846 -4.8358 0.2785
18 1 -0.4756 -3.9701 0.3322
19 6 1.0461 -4.9189 1.5563
20 6 0.2710 -5.9452 2.4287
21 6 -0.2694 -6.9234 1.3560
22 7 -0.6126 -6.0688 0.2047
23 6 -1.5237 -6.3729 -0.7713
24 1 -1.7474 -5.6527 -1.5444
25 6 -2.1599 -7.6066 -0.7669
26 7 -1.8877 -8.4841 0.1757
27 14 -3.4033 -8.0211 -2.0979
28 1 -2.7436 -7.9624 -3.4271
29 1 -3.9352 -9.3888 -1.8698
30 1 -4.5190 -7.0420 -2.0553
31 1 -0.3632 0.0740 1.0250
32 1 -0.3633 0.8507 -0.5765
33 1 -0.3633 -0.9246 -0.4484
34 1 5.2788 0.1914 -0.0005
35 1 4.2060 -2.0479 0.0109
36 1 2.3661 -3.1274 -2.9301
37 1 3.3287 -2.2391 -1.7231
38 1 4.5602 -4.1995 -2.7224
39 1 4.3664 -4.3231 -0.9567
40 1 3.8306 -6.4757 -2.0889
41 1 2.5639 -5.6538 -3.0308
42 1 2.6633 -5.8361 0.0149
43 1 1.6171 -6.8139 -1.0429
44 1 2.0453 -5.2874 1.3244
45 1 1.0967 -3.9490 2.0510
46 1 -0.5463 -5.4617 2.9638
47 1 0.9411 -6.4555 3.1207
48 1 -1.1568 -7.4379 1.7244
49 1 0.4998 -7.6439 1.0777
50 1 -2.3320 -9.3463 0.1786
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001025245932.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:35:56
Heat of formation + Delta-G solvation = 89.858664 kcal
Electronic energy + Delta-G solvation = -32600.866237 eV
Core-core repulsion = 28630.946162 eV
Total energy + Delta-G solvation = -3969.920075 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.66126 -40.36153 -37.53167 -36.87222 -34.09574 -33.78543 -32.58130 -32.44008
-31.09503 -29.23058 -28.52083 -27.41527 -25.77787 -24.62935 -24.28971 -23.45845
-22.76445 -21.25816 -20.43032 -19.75584 -18.73329 -17.90733 -17.44588 -16.79220
-16.05094 -15.85438 -15.44000 -15.23878 -14.91883 -14.67671 -14.59145 -14.22020
-13.95837 -13.77906 -13.60124 -13.37645 -13.13214 -13.03254 -12.94209 -12.43552
-12.09372 -11.91496 -11.65468 -11.41117 -11.38501 -11.14049 -11.05820 -10.85713
-10.78749 -10.66717 -10.50138 -10.36928 -10.19232 -10.09983 -9.97132 -9.87772
-9.68210 -9.56605 -9.40871 -8.84075 -8.57744 -8.22115 -6.73710 -5.64042
-3.02105 0.24857 0.60498 2.57030 2.90148 3.28941 3.39722 3.45128
3.45734 3.76122 4.09325 4.14201 4.26893 4.51330 4.56506 4.66941
4.82709 4.95531 4.98747 5.23408 5.26229 5.28211 5.36573 5.40312
5.45977 5.50500 5.59451 5.70614 5.72471 5.76621 5.83086 5.85294
5.91376 5.97660 6.03457 6.06508 6.07991 6.26325 6.31874 6.44334
6.54611 6.68570 6.74694 6.89110 6.96297 6.97218 7.41770 7.46747
7.62398 7.66975 7.91878 8.20793 8.41394 8.43163 9.25955 9.88302
10.55592 11.41339
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014800 B = 0.003711 C = 0.003528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1891.501700 B = 7543.078629 C = 7933.837699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C 0.114 3.886
3 N -0.244 5.244
4 N -0.232 5.232
5 C 0.028 3.972
6 C -0.091 4.091
7 C -0.114 4.114
8 C 0.544 3.456
9 O -0.485 6.485
10 N -0.590 5.590
11 C 0.096 3.904
12 C -0.132 4.132
13 C -0.121 4.121
14 C -0.125 4.125
15 C 0.136 3.864
16 H 0.075 0.925
17 C 0.163 3.837
18 H 0.077 0.923
19 C -0.127 4.127
20 C -0.150 4.150
21 C 0.162 3.838
22 N -0.594 5.594
23 C -0.220 4.220
24 H 0.073 0.927
25 C -0.008 4.008
26 N -0.920 5.920
27 Si 0.908 3.092
28 H -0.287 1.287
29 H -0.291 1.291
30 H -0.286 1.286
31 H 0.093 0.907
32 H 0.082 0.918
33 H 0.084 0.916
34 H 0.176 0.824
35 H 0.155 0.845
36 H 0.070 0.930
37 H 0.079 0.921
38 H 0.071 0.929
39 H 0.064 0.936
40 H 0.061 0.939
41 H 0.062 0.938
42 H 0.066 0.934
43 H 0.089 0.911
44 H 0.053 0.947
45 H 0.081 0.919
46 H 0.055 0.945
47 H 0.049 0.951
48 H 0.093 0.907
49 H 0.010 0.990
50 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.214 11.991 -2.473 18.760
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.030 4.030
3 N -0.087 5.087
4 N -0.074 5.074
5 C -0.136 4.136
6 C -0.120 4.120
7 C -0.129 4.129
8 C 0.329 3.671
9 O -0.360 6.360
10 N -0.323 5.323
11 C -0.027 4.027
12 C -0.170 4.170
13 C -0.159 4.159
14 C -0.163 4.163
15 C 0.032 3.968
16 H 0.093 0.907
17 C 0.056 3.944
18 H 0.094 0.906
19 C -0.164 4.164
20 C -0.188 4.188
21 C 0.037 3.963
22 N -0.319 5.319
23 C -0.349 4.349
24 H 0.091 0.909
25 C -0.204 4.204
26 N -0.568 5.568
27 Si 0.739 3.261
28 H -0.214 1.214
29 H -0.217 1.217
30 H -0.212 1.212
31 H 0.112 0.888
32 H 0.101 0.899
33 H 0.103 0.897
34 H 0.193 0.807
35 H 0.173 0.827
36 H 0.088 0.912
37 H 0.097 0.903
38 H 0.090 0.910
39 H 0.083 0.917
40 H 0.080 0.920
41 H 0.081 0.919
42 H 0.084 0.916
43 H 0.107 0.893
44 H 0.071 0.929
45 H 0.099 0.901
46 H 0.074 0.926
47 H 0.068 0.932
48 H 0.111 0.889
49 H 0.028 0.972
50 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 13.513 13.309 -2.083 19.081
hybrid contribution -0.149 -2.016 -0.919 2.221
sum 13.364 11.293 -3.002 17.752
Atomic orbital electron populations
1.20773 0.86555 1.04226 1.04577 1.23047 0.99428 0.88640 0.91931
1.73030 1.01520 1.24054 1.10128 1.72863 0.99622 1.27756 1.07118
1.24251 1.02616 0.89304 0.97411 1.22650 0.94032 1.00360 0.94956
1.21365 0.94780 0.96292 1.00499 1.17901 0.83954 0.82711 0.82491
1.90864 1.31184 1.77215 1.36755 1.48217 1.38159 1.16553 1.29409
1.21952 0.89640 0.98739 0.92414 1.21915 0.97481 0.95457 1.02124
1.21569 0.98495 0.96126 0.99665 1.21980 0.96516 1.00199 0.97635
1.22327 0.92621 0.78986 1.02867 0.90707 1.21666 0.91538 0.91219
0.89978 0.90630 1.23121 0.97439 0.99113 0.96723 1.23054 0.98877
0.98546 0.98351 1.21721 0.99229 0.90380 0.85006 1.44724 1.43471
1.16981 1.26709 1.18955 1.14166 0.98400 1.03388 0.90893 1.24752
1.00487 0.96422 0.98761 1.69880 1.45651 1.07442 1.33807 0.86258
0.81331 0.77310 0.81221 1.21369 1.21677 1.21236 0.88845 0.89880
0.89710 0.80659 0.82716 0.91212 0.90258 0.91034 0.91717 0.92007
0.91944 0.91596 0.89255 0.92866 0.90069 0.92606 0.93240 0.88879
0.97195 0.93821
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.19 9.49 36.01 0.34 -0.85 16
2 C 0.11 1.44 6.90 -82.00 -0.57 0.87 16
3 N -0.24 -3.27 11.42 33.81 0.39 -2.89 16
4 N -0.23 -2.84 11.48 30.53 0.35 -2.49 16
5 C 0.03 0.25 11.30 -17.42 -0.20 0.05 16
6 C -0.09 -0.83 7.61 -38.78 -0.30 -1.12 16
7 C -0.11 -1.37 4.98 -104.57 -0.52 -1.90 16
8 C 0.54 7.74 5.75 -12.19 -0.07 7.67 16
9 O -0.49 -8.37 8.95 5.36 0.05 -8.32 16
10 N -0.59 -8.03 2.95 -166.22 -0.49 -8.52 16
11 C 0.10 0.97 5.89 -3.71 -0.02 0.95 16
12 C -0.13 -1.22 6.08 -26.58 -0.16 -1.38 16
13 C -0.12 -1.46 5.89 -26.65 -0.16 -1.62 16
14 C -0.13 -2.00 4.96 -26.61 -0.13 -2.13 16
15 C 0.14 2.32 2.70 -67.60 -0.18 2.14 16
16 H 0.07 1.43 7.84 -51.93 -0.41 1.02 16
17 C 0.16 3.34 2.28 -66.95 -0.15 3.18 16
18 H 0.08 1.71 5.80 -52.43 -0.30 1.41 16
19 C -0.13 -2.37 5.09 -24.76 -0.13 -2.50 16
20 C -0.15 -3.03 7.09 -24.45 -0.17 -3.20 16
21 C 0.16 3.92 5.75 -2.53 -0.01 3.90 16
22 N -0.59 -14.58 2.75 -162.57 -0.45 -15.02 16
23 C -0.22 -5.89 9.75 -15.06 -0.15 -6.04 16
24 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16
25 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16
26 N -0.92 -26.36 10.17 55.49 0.56 -25.80 16
27 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16
28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
33 H 0.08 1.07 6.68 -51.93 -0.35 0.72 16
34 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16
35 H 0.16 1.05 7.45 -52.49 -0.39 0.66 16
36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.08 0.67 4.34 -51.93 -0.23 0.44 16
38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
41 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
42 H 0.07 1.05 5.55 -51.93 -0.29 0.77 16
43 H 0.09 1.75 7.96 -51.93 -0.41 1.34 16
44 H 0.05 0.94 5.23 -51.93 -0.27 0.67 16
45 H 0.08 1.53 5.61 -51.87 -0.29 1.24 16
46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
47 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16
48 H 0.09 2.56 6.12 -51.93 -0.32 2.25 16
49 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16
50 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
LS Contribution 373.81 15.07 5.63 5.63
Total: -1.00 -30.89 373.81 -9.10 -40.00
By element:
Atomic # 1 Polarization: 10.47 SS G_CDS: -7.45 Total: 3.01 kcal
Atomic # 6 Polarization: 0.36 SS G_CDS: -2.67 Total: -2.31 kcal
Atomic # 7 Polarization: -55.08 SS G_CDS: 0.36 Total: -54.72 kcal
Atomic # 8 Polarization: -8.37 SS G_CDS: 0.05 Total: -8.32 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -30.89 -9.10 -40.00 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025245932.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.856 kcal
(2) G-P(sol) polarization free energy of solvation -30.895 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.961 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.859 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds