Wall clock time and date at job start Wed Apr 1 2020 03:35:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.31926 * 120.17021 * 2 1
4 4 N 1.28277 * 122.32051 * 180.02562 * 3 2 1
5 5 C 1.31916 * 122.52059 * 359.97438 * 4 3 2
6 6 C 1.38503 * 119.96785 * 359.72157 * 5 4 3
7 7 C 1.39722 * 120.17316 * 180.02562 * 2 1 3
8 8 C 1.48146 * 121.14366 * 359.97364 * 7 2 1
9 9 O 1.21511 * 119.99746 * 307.17262 * 8 7 2
10 10 N 1.34779 * 119.99592 * 127.17244 * 8 7 2
11 11 C 1.46921 * 120.63075 * 0.59808 * 10 8 7
12 12 C 1.53190 * 108.77452 * 126.37348 * 11 10 8
13 13 C 1.53109 * 109.33312 * 54.63286 * 12 11 10
14 14 C 1.53045 * 109.50157 * 298.66210 * 13 12 11
15 15 C 1.46926 * 120.62645 * 180.58183 * 10 8 7
16 16 H 1.08994 * 109.70728 * 113.77080 * 15 10 8
17 17 C 1.52999 * 109.58781 * 353.41336 * 15 10 8
18 18 H 1.09001 * 109.87392 * 54.03490 * 17 15 10
19 19 C 1.54329 * 109.88159 * 293.01842 * 17 15 10
20 20 C 1.55406 * 102.82562 * 218.48162 * 19 17 15
21 21 C 1.54906 * 101.66902 * 35.34043 * 20 19 17
22 22 N 1.47022 * 109.88244 * 175.05341 * 17 15 10
23 23 C 1.36933 * 125.64450 * 298.32105 * 22 17 15
24 24 H 1.08001 * 120.00232 * 356.44263 * 23 22 17
25 25 C 1.38814 * 120.00038 * 176.44900 * 23 22 17
26 26 N 1.31627 * 119.99860 * 0.02562 * 25 23 22
27 27 Si 1.86799 * 120.00240 * 179.97438 * 25 23 22
28 28 H 1.48504 * 109.46730 * 60.00307 * 27 25 23
29 29 H 1.48505 * 109.46980 * 179.97438 * 27 25 23
30 30 H 1.48495 * 109.47367 * 300.00469 * 27 25 23
31 31 H 1.09000 * 109.46517 * 274.12864 * 1 2 3
32 32 H 1.08995 * 109.46905 * 34.12586 * 1 2 3
33 33 H 1.08991 * 109.47081 * 154.12835 * 1 2 3
34 34 H 1.08001 * 120.01823 * 180.02562 * 5 4 3
35 35 H 1.08000 * 121.08963 * 180.30737 * 6 5 4
36 36 H 1.09005 * 109.58881 * 246.15697 * 11 10 8
37 37 H 1.08993 * 109.59284 * 6.44242 * 11 10 8
38 38 H 1.09004 * 109.50133 * 174.58535 * 12 11 10
39 39 H 1.08999 * 109.49654 * 294.68109 * 12 11 10
40 40 H 1.08997 * 109.50489 * 178.63137 * 13 12 11
41 41 H 1.09004 * 109.45039 * 58.65091 * 13 12 11
42 42 H 1.09003 * 109.49088 * 301.37664 * 14 13 12
43 43 H 1.09000 * 109.49462 * 181.31463 * 14 13 12
44 44 H 1.08997 * 110.72358 * 336.75484 * 19 17 15
45 45 H 1.08997 * 110.72003 * 100.02805 * 19 17 15
46 46 H 1.08997 * 110.89172 * 277.26335 * 20 19 17
47 47 H 1.09007 * 111.03199 * 153.47283 * 20 19 17
48 48 H 1.08996 * 110.37032 * 204.23755 * 21 20 19
49 49 H 1.09004 * 110.36775 * 81.90941 * 21 20 19
50 50 H 0.97001 * 119.99874 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1700 1.1405 0.0000
4 7 3.4519 1.1887 -0.0005
5 6 4.2023 0.1038 -0.0005
6 6 3.6091 -1.1478 0.0058
7 6 2.2093 -1.2079 -0.0005
8 6 1.4982 -2.5076 -0.0005
9 8 0.6492 -2.7355 0.8383
10 7 1.7932 -3.4370 -0.9310
11 6 2.8265 -3.1810 -1.9435
12 6 3.8421 -4.3274 -1.9124
13 6 3.1080 -5.6597 -2.0863
14 6 2.1227 -5.8547 -0.9315
15 6 1.0877 -4.7256 -0.9516
16 1 0.4838 -4.7996 -1.8560
17 6 0.1846 -4.8358 0.2785
18 1 -0.4756 -3.9701 0.3322
19 6 1.0461 -4.9189 1.5563
20 6 0.2710 -5.9452 2.4287
21 6 -0.2694 -6.9234 1.3560
22 7 -0.6126 -6.0688 0.2047
23 6 -1.5237 -6.3729 -0.7713
24 1 -1.7474 -5.6527 -1.5444
25 6 -2.1599 -7.6066 -0.7669
26 7 -1.8877 -8.4841 0.1757
27 14 -3.4033 -8.0211 -2.0979
28 1 -2.7436 -7.9624 -3.4271
29 1 -3.9352 -9.3888 -1.8698
30 1 -4.5190 -7.0420 -2.0553
31 1 -0.3632 0.0740 1.0250
32 1 -0.3633 0.8507 -0.5765
33 1 -0.3633 -0.9246 -0.4484
34 1 5.2788 0.1914 -0.0005
35 1 4.2060 -2.0479 0.0109
36 1 2.3661 -3.1274 -2.9301
37 1 3.3287 -2.2391 -1.7231
38 1 4.5602 -4.1995 -2.7224
39 1 4.3664 -4.3231 -0.9567
40 1 3.8306 -6.4757 -2.0889
41 1 2.5639 -5.6538 -3.0308
42 1 2.6633 -5.8361 0.0149
43 1 1.6171 -6.8139 -1.0429
44 1 2.0453 -5.2874 1.3244
45 1 1.0967 -3.9490 2.0510
46 1 -0.5463 -5.4617 2.9638
47 1 0.9411 -6.4555 3.1207
48 1 -1.1568 -7.4379 1.7244
49 1 0.4998 -7.6439 1.0777
50 1 -2.3320 -9.3463 0.1786
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001025245932.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:35:55
Heat of formation + Delta-G solvation = 71.310709 kcal
Electronic energy + Delta-G solvation = -32601.670537 eV
Core-core repulsion = 28630.946162 eV
Total energy + Delta-G solvation = -3970.724375 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.63784 -41.48719 -38.91940 -38.20747 -35.16829 -34.69429 -34.32891 -33.56792
-32.37461 -31.12788 -29.41682 -28.78322 -26.95571 -26.44747 -25.41496 -24.46871
-23.89093 -22.37731 -21.92740 -21.36810 -19.94380 -19.10651 -18.71220 -18.05878
-17.28248 -17.00698 -16.77639 -16.32348 -16.24591 -15.97689 -15.86783 -15.55653
-15.12763 -14.99826 -14.82992 -14.43742 -14.31582 -14.12687 -13.94354 -13.83551
-13.50986 -13.37289 -13.08738 -13.05088 -12.83313 -12.69359 -12.55854 -12.09904
-12.05607 -11.98597 -11.96343 -11.68304 -11.67160 -11.43252 -11.18360 -11.10710
-11.03355 -10.97346 -10.79335 -10.66793 -10.13482 -9.48616 -8.72394 -7.74082
-5.13475 -0.60823 -0.18337 1.45009 1.47544 1.48895 1.53761 1.80361
2.43827 2.52489 2.93522 3.14661 3.30985 3.38498 3.55475 3.73104
3.81262 3.88447 3.92675 3.96379 4.08561 4.21217 4.22763 4.30894
4.35931 4.40248 4.42920 4.47516 4.53994 4.58672 4.63010 4.75834
4.82273 4.88497 4.89693 5.00038 5.02325 5.06771 5.09566 5.17794
5.22201 5.26120 5.28241 5.32485 5.49089 5.52998 5.58360 5.71881
5.82782 5.86655 6.29944 6.40279 7.06820 7.17843 7.59805 7.87114
8.53038 9.30014
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014800 B = 0.003711 C = 0.003528
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1891.501700 B = 7543.078629 C = 7933.837699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.099 4.099
2 C 0.104 3.896
3 N -0.269 5.269
4 N -0.258 5.258
5 C 0.044 3.956
6 C -0.070 4.070
7 C -0.128 4.128
8 C 0.547 3.453
9 O -0.523 6.523
10 N -0.587 5.587
11 C 0.091 3.909
12 C -0.122 4.122
13 C -0.118 4.118
14 C -0.116 4.116
15 C 0.149 3.851
16 H 0.048 0.952
17 C 0.161 3.839
18 H 0.053 0.947
19 C -0.109 4.109
20 C -0.141 4.141
21 C 0.169 3.831
22 N -0.611 5.611
23 C -0.225 4.225
24 H 0.073 0.927
25 C -0.064 4.064
26 N -0.948 5.948
27 Si 0.969 3.031
28 H -0.277 1.277
29 H -0.295 1.295
30 H -0.282 1.282
31 H 0.089 0.911
32 H 0.094 0.906
33 H 0.068 0.932
34 H 0.223 0.777
35 H 0.190 0.810
36 H 0.071 0.929
37 H 0.105 0.895
38 H 0.106 0.894
39 H 0.079 0.921
40 H 0.074 0.926
41 H 0.055 0.945
42 H 0.069 0.931
43 H 0.043 0.957
44 H 0.069 0.931
45 H 0.088 0.912
46 H 0.047 0.953
47 H 0.075 0.925
48 H 0.055 0.945
49 H -0.010 1.010
50 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.926 13.631 -3.470 22.786
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.041 4.041
3 N -0.111 5.111
4 N -0.098 5.098
5 C -0.121 4.121
6 C -0.100 4.100
7 C -0.143 4.143
8 C 0.334 3.666
9 O -0.401 6.401
10 N -0.319 5.319
11 C -0.030 4.030
12 C -0.160 4.160
13 C -0.155 4.155
14 C -0.154 4.154
15 C 0.044 3.956
16 H 0.066 0.934
17 C 0.055 3.945
18 H 0.070 0.930
19 C -0.146 4.146
20 C -0.179 4.179
21 C 0.044 3.956
22 N -0.336 5.336
23 C -0.354 4.354
24 H 0.090 0.910
25 C -0.256 4.256
26 N -0.598 5.598
27 Si 0.798 3.202
28 H -0.203 1.203
29 H -0.221 1.221
30 H -0.209 1.209
31 H 0.108 0.892
32 H 0.113 0.887
33 H 0.086 0.914
34 H 0.239 0.761
35 H 0.207 0.793
36 H 0.090 0.910
37 H 0.123 0.877
38 H 0.125 0.875
39 H 0.097 0.903
40 H 0.093 0.907
41 H 0.074 0.926
42 H 0.087 0.913
43 H 0.061 0.939
44 H 0.087 0.913
45 H 0.106 0.894
46 H 0.066 0.934
47 H 0.094 0.906
48 H 0.073 0.927
49 H 0.008 0.992
50 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 17.263 15.017 -3.110 23.091
hybrid contribution -1.244 -2.445 -0.610 2.810
sum 16.019 12.572 -3.720 20.701
Atomic orbital electron populations
1.20700 0.86866 1.03801 1.04402 1.23063 0.99538 0.89000 0.92541
1.73005 1.02453 1.24333 1.11311 1.72782 0.99355 1.29648 1.08005
1.24944 1.04355 0.88021 0.94753 1.23045 0.92601 1.01931 0.92405
1.21117 0.96158 0.94370 1.02621 1.18212 0.83315 0.83306 0.81754
1.90834 1.32820 1.78048 1.38376 1.48146 1.38611 1.14986 1.30203
1.22257 0.88961 1.00461 0.91363 1.21909 0.97217 0.92520 1.04359
1.21546 0.97876 0.98839 0.97271 1.21814 0.96634 0.97177 0.99741
1.21702 0.92683 0.81587 0.99595 0.93422 1.21691 0.91812 0.88414
0.92571 0.92955 1.23012 0.97420 0.98915 0.95244 1.22951 0.99248
0.98026 0.97722 1.21444 0.97078 0.90920 0.86160 1.44919 1.44130
1.18151 1.26439 1.19227 1.14273 0.98342 1.03578 0.90962 1.25489
1.02623 0.96552 1.00954 1.70115 1.46802 1.07432 1.35440 0.85284
0.79169 0.76552 0.79150 1.20342 1.22147 1.20875 0.89230 0.88721
0.91354 0.76082 0.79324 0.91023 0.87690 0.87527 0.90257 0.90715
0.92631 0.91267 0.93860 0.91295 0.89361 0.93384 0.90639 0.92663
0.99163 0.94619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.34 9.49 71.24 0.68 -1.67 16
2 C 0.10 2.50 6.90 42.90 0.30 2.80 16
3 N -0.27 -6.79 11.42 -46.95 -0.54 -7.33 16
4 N -0.26 -5.54 11.48 -57.33 -0.66 -6.20 16
5 C 0.04 0.56 11.30 84.74 0.96 1.51 16
6 C -0.07 -0.94 7.61 22.79 0.17 -0.77 16
7 C -0.13 -2.77 4.98 -19.83 -0.10 -2.87 16
8 C 0.55 14.87 5.75 86.88 0.50 15.37 16
9 O -0.52 -18.14 8.95 -3.75 -0.03 -18.17 16
10 N -0.59 -15.01 2.95 -798.11 -2.35 -17.36 16
11 C 0.09 1.50 5.89 86.36 0.51 2.01 16
12 C -0.12 -1.66 6.08 30.69 0.19 -1.48 16
13 C -0.12 -2.56 5.89 30.65 0.18 -2.38 16
14 C -0.12 -3.65 4.96 30.67 0.15 -3.49 16
15 C 0.15 5.15 2.70 44.97 0.12 5.28 16
16 H 0.05 1.90 7.84 -2.39 -0.02 1.88 16
17 C 0.16 6.78 2.28 45.34 0.10 6.88 16
18 H 0.05 2.49 5.80 -15.72 -0.09 2.40 16
19 C -0.11 -4.04 5.09 31.87 0.16 -3.88 16
20 C -0.14 -5.78 7.09 32.07 0.23 -5.55 16
21 C 0.17 8.62 5.75 86.85 0.50 9.12 16
22 N -0.61 -31.46 2.75 -668.25 -1.84 -33.30 16
23 C -0.22 -12.58 9.75 84.03 0.82 -11.76 16
24 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16
25 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16
26 N -0.95 -57.03 10.17 21.65 0.22 -56.81 16
27 Si 0.97 46.12 29.55 68.60 2.03 48.15 16
28 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16
30 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16
31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16
32 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16
33 H 0.07 1.81 6.68 -2.39 -0.02 1.79 16
34 H 0.22 0.69 8.06 -2.91 -0.02 0.67 16
35 H 0.19 1.27 7.45 -2.91 -0.02 1.25 16
36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16
37 H 0.11 1.22 4.34 -2.39 -0.01 1.21 16
38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16
39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16
40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16
42 H 0.07 2.11 5.55 -2.39 -0.01 2.10 16
43 H 0.04 1.76 7.96 -2.39 -0.02 1.74 16
44 H 0.07 2.33 5.23 -2.39 -0.01 2.32 16
45 H 0.09 3.25 5.61 -6.72 -0.04 3.21 16
46 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16
47 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16
48 H 0.06 3.23 6.12 -2.39 -0.01 3.22 16
49 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16
50 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16
Total: -1.00 -73.42 373.81 3.62 -69.80
By element:
Atomic # 1 Polarization: 14.41 SS G_CDS: 0.85 Total: 15.26 kcal
Atomic # 6 Polarization: 0.03 SS G_CDS: 5.93 Total: 5.96 kcal
Atomic # 7 Polarization: -115.84 SS G_CDS: -5.16 Total: -121.00 kcal
Atomic # 8 Polarization: -18.14 SS G_CDS: -0.03 Total: -18.17 kcal
Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal
Total: -73.42 3.62 -69.80 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001025245932.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 141.110 kcal
(2) G-P(sol) polarization free energy of solvation -73.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.694 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.799 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.311 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds