Wall clock time and date at job start Wed Apr 1 2020 02:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99886 * 2 1 4 4 H 1.48490 * 109.46873 * 239.99658 * 3 2 1 5 5 H 1.48504 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46871 * 119.99602 * 3 2 1 7 7 C 1.38804 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00159 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00187 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.51009 * 32.46497 * 10 9 7 12 12 C 1.55651 * 110.53119 * 269.82784 * 10 9 7 13 13 C 1.54838 * 102.69855 * 203.04826 * 12 10 9 14 14 C 1.54141 * 104.34885 * 38.29219 * 13 12 10 15 15 H 1.08993 * 112.65756 * 99.31677 * 14 13 12 16 16 C 1.54462 * 108.80017 * 224.04193 * 14 13 12 17 17 N 1.48334 * 104.42636 * 138.60750 * 16 14 13 18 18 C 1.34781 * 128.20100 * 138.14423 * 17 16 14 19 19 O 1.21634 * 120.00037 * 180.51798 * 18 17 16 20 20 C 1.47164 * 119.99779 * 0.50880 * 18 17 16 21 21 C 1.38405 * 126.88194 * 11.53948 * 20 18 17 22 22 C 1.39672 * 105.35578 * 179.97438 * 21 20 18 23 23 N 1.30859 * 107.86353 * 359.97438 * 22 21 20 24 24 N 1.28439 * 110.92643 * 359.71259 * 23 22 21 25 25 C 1.46509 * 125.19312 * 180.28071 * 24 23 22 26 26 C 1.53779 * 113.61217 * 42.64530 * 25 24 23 27 27 C 1.53787 * 87.08032 * 220.02216 * 26 25 24 28 28 C 1.53779 * 87.08114 * 25.43413 * 27 26 25 29 29 C 1.48344 * 103.60384 * 318.17037 * 17 16 14 30 30 C 1.54148 * 110.46016 * 155.00129 * 10 9 7 31 31 H 1.09002 * 112.65029 * 19.39952 * 30 10 9 32 32 H 0.97001 * 119.99862 * 0.02562 * 1 2 3 33 33 H 0.97008 * 120.00127 * 0.02562 * 9 7 2 34 34 H 1.09003 * 110.71889 * 84.77245 * 12 10 9 35 35 H 1.09004 * 110.82612 * 321.37277 * 12 10 9 36 36 H 1.08998 * 110.46029 * 279.57033 * 13 12 10 37 37 H 1.09001 * 110.56123 * 157.05932 * 13 12 10 38 38 H 1.09009 * 110.46754 * 19.83533 * 16 14 13 39 39 H 1.09005 * 110.46828 * 257.38225 * 16 14 13 40 40 H 1.08003 * 127.32448 * 0.02562 * 21 20 18 41 41 H 1.08007 * 126.06734 * 179.97438 * 22 21 20 42 42 H 1.08993 * 112.85131 * 173.95800 * 25 24 23 43 43 H 1.08996 * 113.61462 * 334.57087 * 26 25 24 44 44 H 1.09002 * 113.61151 * 105.47732 * 26 25 24 45 45 H 1.09000 * 113.61369 * 270.88310 * 27 26 25 46 46 H 1.09001 * 113.60839 * 139.98439 * 27 26 25 47 47 H 1.09002 * 113.61480 * 220.01623 * 28 27 26 48 48 H 1.09005 * 113.61446 * 89.11326 * 28 27 26 49 49 H 1.09003 * 110.46704 * 160.47501 * 29 17 16 50 50 H 1.09007 * 110.45819 * 282.92800 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9950 -3.5569 0.5485 12 6 2.3272 -4.1317 -1.4571 13 6 2.5260 -5.6578 -1.2866 14 6 1.4938 -6.0601 -0.2148 15 1 0.5894 -6.4914 -0.6438 16 6 2.1686 -7.0181 0.7914 17 7 1.6696 -6.5743 2.1159 18 6 1.2669 -7.3355 3.1528 19 8 0.8730 -6.8097 4.1764 20 6 1.3037 -8.8028 3.0463 21 6 1.9209 -9.5486 2.0571 22 6 1.6778 -10.8823 2.3935 23 7 0.9729 -10.8961 3.4959 24 7 0.7420 -9.7017 3.9078 25 6 -0.0130 -9.3559 5.1148 26 6 0.3274 -10.2375 6.3280 27 6 -1.1751 -10.2298 6.6559 28 6 -1.4203 -9.9746 5.1594 29 6 1.7179 -5.0942 2.0290 30 6 1.1939 -4.7779 0.6109 31 1 0.1315 -4.5341 0.6144 32 1 -0.4850 0.8401 -0.0004 33 1 0.3555 -2.3880 -0.0002 34 1 3.2296 -3.6665 -1.8539 35 1 1.4700 -3.9229 -2.0973 36 1 3.5371 -5.8742 -0.9420 37 1 2.3244 -6.1771 -2.2235 38 1 3.2533 -6.9216 0.7410 39 1 1.8692 -8.0480 0.5969 40 1 2.4738 -9.1782 1.2065 41 1 2.0123 -11.7484 1.8416 42 1 0.0014 -8.2879 5.3317 43 1 0.7104 -11.2218 6.0587 44 1 0.9401 -9.7337 7.0756 45 1 -1.4780 -9.4009 7.2956 46 1 -1.5513 -11.1924 7.0021 47 1 -2.2184 -9.2585 4.9636 48 1 -1.5149 -10.8870 4.5706 49 1 1.0706 -4.6467 2.7832 50 1 2.7416 -4.7388 2.1473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026268674.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:34 Heat of formation + Delta-G solvation = 76.013283 kcal Electronic energy + Delta-G solvation = -30497.152748 eV Core-core repulsion = 26526.632292 eV Total energy + Delta-G solvation = -3970.520456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.64132 -41.33739 -39.57070 -39.46871 -36.73023 -35.05211 -32.84370 -32.71125 -32.42572 -30.30772 -29.79844 -26.79969 -26.73148 -26.61246 -25.53740 -24.64297 -23.18267 -22.69596 -21.58109 -20.95250 -20.37184 -19.91137 -19.10792 -18.39898 -17.84920 -17.21025 -16.99923 -16.66428 -16.53502 -16.31012 -15.97271 -15.48221 -15.36869 -15.26495 -14.78356 -14.60643 -14.21246 -13.97778 -13.84687 -13.64305 -13.63165 -13.31649 -13.21518 -12.92713 -12.84592 -12.55891 -12.39406 -12.25315 -12.12438 -12.05742 -11.86854 -11.67962 -11.66502 -11.61980 -11.50279 -11.42294 -11.21041 -11.05407 -10.83096 -10.30585 -9.97116 -9.84696 -8.95037 -7.92466 -5.19968 0.16984 1.22721 1.47462 1.50012 1.55796 1.64498 1.94787 2.06225 2.57544 3.19162 3.27060 3.40757 3.42769 3.47290 3.69167 3.70441 3.72413 3.78512 3.91736 4.07908 4.11854 4.20882 4.29811 4.44139 4.46488 4.51371 4.56269 4.60622 4.63763 4.68064 4.68964 4.72925 4.77965 4.82694 4.87095 4.90670 4.93528 4.95005 5.03559 5.09980 5.17863 5.29206 5.30682 5.44109 5.49740 5.54535 5.58919 5.66064 5.76022 6.30050 6.36488 6.83618 7.10150 7.35601 8.13870 8.34729 9.31077 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.002448 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.632581 B =11434.525997 C =12606.402911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.735 5.735 10 C 0.175 3.825 11 H 0.058 0.942 12 C -0.139 4.139 13 C -0.099 4.099 14 C -0.091 4.091 15 H 0.095 0.905 16 C 0.086 3.914 17 N -0.604 5.604 18 C 0.601 3.399 19 O -0.586 6.586 20 C -0.059 4.059 21 C -0.186 4.186 22 C -0.004 4.004 23 N -0.291 5.291 24 N -0.254 5.254 25 C 0.091 3.909 26 C -0.133 4.133 27 C -0.122 4.122 28 C -0.138 4.138 29 C 0.121 3.879 30 C -0.103 4.103 31 H 0.064 0.936 32 H 0.249 0.751 33 H 0.370 0.630 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.120 0.880 40 H 0.201 0.799 41 H 0.223 0.777 42 H 0.130 0.870 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.052 0.948 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -27.364 4.161 28.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.226 1.226 6 H -0.206 1.206 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.374 5.374 10 C 0.066 3.934 11 H 0.075 0.925 12 C -0.179 4.179 13 C -0.137 4.137 14 C -0.111 4.111 15 H 0.114 0.886 16 C -0.034 4.034 17 N -0.335 5.335 18 C 0.391 3.609 19 O -0.468 6.468 20 C -0.187 4.187 21 C -0.214 4.214 22 C -0.179 4.179 23 N -0.123 5.123 24 N -0.042 5.042 25 C -0.009 4.009 26 C -0.171 4.171 27 C -0.160 4.160 28 C -0.177 4.177 29 C -0.001 4.001 30 C -0.124 4.124 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.202 0.798 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.217 0.783 41 H 0.239 0.761 42 H 0.147 0.853 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.114 0.886 46 H 0.116 0.884 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.071 0.929 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.656 -27.697 5.711 28.515 hybrid contribution -0.013 2.351 -0.449 2.393 sum 3.643 -25.347 5.262 26.142 Atomic orbital electron populations 1.69815 1.06636 1.25908 1.59957 1.25529 0.96289 1.01039 1.04224 0.85274 0.77195 0.79517 0.78180 1.20234 1.22591 1.20584 1.19595 0.91434 0.85226 1.40351 0.90448 1.42663 1.05292 1.01117 1.88317 1.21568 0.93516 0.83707 0.94566 0.92451 1.23185 1.00382 0.96400 0.97975 1.22332 0.98753 0.94055 0.98601 1.22788 0.99658 0.93344 0.95308 0.88636 1.23589 1.00151 1.00751 0.78909 1.48828 1.62529 1.07437 1.14720 1.16824 0.77053 0.84854 0.82174 1.90724 1.50486 1.74971 1.30633 1.21343 1.08622 0.91039 0.97695 1.23127 1.04646 0.92978 1.00658 1.24272 1.00240 0.98851 0.94562 1.73067 1.18806 1.04535 1.15881 1.45935 1.37295 1.01914 1.19037 1.23974 0.93172 1.02262 0.81516 1.23292 0.98835 1.00031 0.94919 1.22681 0.94291 1.04275 0.94770 1.23343 0.94051 1.01359 0.98921 1.22522 1.01503 0.78747 0.97319 1.22960 0.99343 0.96311 0.93739 0.91736 0.94240 0.79811 0.92565 0.93582 0.89197 0.89506 0.87640 0.86280 0.78274 0.76094 0.85278 0.88614 0.90201 0.88569 0.88382 0.90593 0.88990 0.92879 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.23 -12.74 9.96 84.03 0.84 -11.90 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.08 5.21 -316.80 -1.65 -37.73 16 10 C 0.18 6.34 3.09 46.29 0.14 6.48 16 11 H 0.06 2.08 7.13 -2.39 -0.02 2.06 16 12 C -0.14 -4.21 6.61 32.14 0.21 -4.00 16 13 C -0.10 -1.89 6.36 31.61 0.20 -1.69 16 14 C -0.09 -1.90 3.96 -9.08 -0.04 -1.94 16 15 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 16 C 0.09 1.47 5.57 86.52 0.48 1.95 16 17 N -0.60 -15.76 3.31 -810.78 -2.69 -18.44 16 18 C 0.60 18.05 7.89 86.59 0.68 18.73 16 19 O -0.59 -21.75 14.82 -4.14 -0.06 -21.81 16 20 C -0.06 -1.47 6.89 40.79 0.28 -1.19 16 21 C -0.19 -3.18 9.38 22.66 0.21 -2.96 16 22 C 0.00 -0.07 12.03 85.18 1.02 0.96 16 23 N -0.29 -6.32 11.14 -57.14 -0.64 -6.95 16 24 N -0.25 -6.21 3.46 -311.80 -1.08 -7.29 16 25 C 0.09 2.08 4.46 45.52 0.20 2.28 16 26 C -0.13 -2.30 7.75 31.12 0.24 -2.06 16 27 C -0.12 -1.67 8.08 31.12 0.25 -1.42 16 28 C -0.14 -2.51 7.80 31.12 0.24 -2.27 16 29 C 0.12 3.73 6.58 86.52 0.57 4.30 16 30 C -0.10 -3.16 3.64 -9.07 -0.03 -3.19 16 31 H 0.06 2.31 7.83 -2.39 -0.02 2.29 16 32 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 33 H 0.37 19.96 7.63 -92.70 -0.71 19.25 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.34 7.18 -2.39 -0.02 1.33 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.11 1.36 7.20 -2.38 -0.02 1.34 16 39 H 0.12 1.45 4.43 -2.38 -0.01 1.44 16 40 H 0.20 2.02 5.14 -2.91 -0.01 2.01 16 41 H 0.22 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.13 3.56 5.67 -2.39 -0.01 3.55 16 43 H 0.10 1.70 7.74 -2.39 -0.02 1.68 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.09 1.70 8.04 -2.38 -0.02 1.68 16 49 H 0.05 1.95 7.87 -2.39 -0.02 1.93 16 50 H 0.09 2.50 7.21 -2.38 -0.02 2.49 16 Total: -1.00 -73.77 389.83 2.44 -71.33 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.26 Total: 34.34 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.98 Total: -1.98 kcal Atomic # 7 Polarization: -124.29 SS G_CDS: -5.77 Total: -130.06 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -73.77 2.44 -71.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026268674.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.345 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds