Wall clock time and date at job start Wed Apr 1 2020 02:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99807 * 2 1 4 4 H 1.48503 * 109.47223 * 90.00446 * 3 2 1 5 5 H 1.48500 * 109.47128 * 329.99764 * 3 2 1 6 6 H 1.48509 * 109.47143 * 209.99801 * 3 2 1 7 7 C 1.38814 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00123 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00134 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.90949 * 34.66084 * 10 9 7 12 12 C 1.53869 * 109.92339 * 273.54336 * 10 9 7 13 13 C 1.54130 * 106.49322 * 242.35453 * 12 10 9 14 14 C 1.54843 * 104.63458 * 335.49483 * 13 12 10 15 15 H 1.08999 * 113.73933 * 273.72553 * 14 13 12 16 16 C 1.54206 * 108.04657 * 146.45238 * 14 13 12 17 17 N 1.46907 * 107.63762 * 272.99144 * 16 14 13 18 18 C 1.34780 * 125.61734 * 181.48215 * 17 16 14 19 19 O 1.21633 * 119.99388 * 174.84599 * 18 17 16 20 20 C 1.47154 * 120.00293 * 354.85096 * 18 17 16 21 21 C 1.38415 * 126.88116 * 5.56773 * 20 18 17 22 22 C 1.39682 * 105.35487 * 179.97438 * 21 20 18 23 23 N 1.30866 * 107.86068 * 0.35549 * 22 21 20 24 24 N 1.28434 * 110.92971 * 359.77318 * 23 22 21 25 25 C 1.46505 * 125.19289 * 180.02562 * 24 23 22 26 26 C 1.53781 * 113.60936 * 42.37237 * 25 24 23 27 27 C 1.53776 * 87.08092 * 220.02090 * 26 25 24 28 28 C 1.53779 * 113.60961 * 304.88060 * 25 24 23 29 29 C 1.47343 * 108.76342 * 1.52495 * 17 16 14 30 30 C 1.53721 * 109.92245 * 155.97995 * 10 9 7 31 31 H 1.08999 * 112.96435 * 264.46285 * 30 10 9 32 32 H 0.97003 * 119.99726 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99933 * 359.97438 * 9 7 2 34 34 H 1.08999 * 110.05026 * 1.60863 * 12 10 9 35 35 H 1.08998 * 110.05176 * 123.03838 * 12 10 9 36 36 H 1.08996 * 110.40489 * 94.28425 * 13 12 10 37 37 H 1.09004 * 110.40340 * 216.71322 * 13 12 10 38 38 H 1.08999 * 109.82629 * 32.52776 * 16 14 13 39 39 H 1.09003 * 109.82038 * 153.38548 * 16 14 13 40 40 H 1.07999 * 127.32361 * 0.03869 * 21 20 18 41 41 H 1.07999 * 126.06507 * 180.09300 * 22 21 20 42 42 H 1.08997 * 112.85184 * 173.68340 * 25 24 23 43 43 H 1.08994 * 113.61825 * 334.57370 * 26 25 24 44 44 H 1.09008 * 113.61235 * 105.47681 * 26 25 24 45 45 H 1.09007 * 113.61880 * 270.88640 * 27 26 25 46 46 H 1.09001 * 113.61618 * 139.98567 * 27 26 25 47 47 H 1.08998 * 113.61211 * 254.52254 * 28 25 24 48 48 H 1.08995 * 113.61734 * 25.34518 * 28 25 24 49 49 H 1.08993 * 110.29872 * 95.01449 * 29 17 16 50 50 H 1.08995 * 110.29574 * 217.15799 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 1.4475 2.6526 -0.7001 6 1 3.5478 1.4402 -0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9738 -3.5567 0.5834 12 6 2.3977 -4.0661 -1.4433 13 6 1.6725 -5.4014 -1.7016 14 6 1.4827 -6.0219 -0.2956 15 1 2.3369 -6.6072 0.0447 16 6 0.1541 -6.8046 -0.2943 17 7 -0.9177 -5.8617 0.0525 18 6 -2.2230 -6.1708 0.1840 19 8 -3.0119 -5.3278 0.5665 20 6 -2.6935 -7.5281 -0.1350 21 6 -1.9129 -8.6193 -0.4755 22 6 -2.8126 -9.6675 -0.6823 23 7 -4.0204 -9.2052 -0.4821 24 7 -3.9885 -7.9619 -0.1616 25 6 -5.1619 -7.1351 0.1315 26 6 -6.2135 -7.8444 1.0009 27 6 -7.2798 -7.1874 0.1086 28 6 -6.2095 -7.1315 -0.9943 29 6 -0.3308 -4.5221 0.2318 30 6 1.1768 -4.7704 0.5888 31 1 1.3568 -4.9390 1.6506 32 1 -0.4850 -0.8401 -0.0004 33 1 0.3556 -2.3880 0.0005 34 1 2.0426 -3.3071 -2.1403 35 1 3.4744 -4.1976 -1.5511 36 1 0.7056 -5.2239 -2.1723 37 1 2.2858 -6.0526 -2.3246 38 1 -0.0286 -7.2245 -1.2834 39 1 0.1973 -7.6049 0.4445 40 1 -0.8369 -8.6533 -0.5618 41 1 -2.5571 -10.6788 -0.9623 42 1 -4.8995 -6.1387 0.4869 43 1 -6.1858 -8.9310 0.9203 44 1 -6.2333 -7.4959 2.0336 45 1 -7.5976 -6.2053 0.4589 46 1 -8.1166 -7.8446 -0.1279 47 1 -6.2261 -6.2076 -1.5723 48 1 -6.1798 -8.0226 -1.6212 49 1 -0.4079 -3.9488 -0.6919 50 1 -0.8292 -3.9970 1.0465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026268677.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:39 Heat of formation + Delta-G solvation = 94.638941 kcal Electronic energy + Delta-G solvation = -30995.403036 eV Core-core repulsion = 27025.690249 eV Total energy + Delta-G solvation = -3969.712787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.76030 -40.42420 -38.71753 -38.41280 -35.43113 -33.63007 -31.94573 -31.34869 -30.92023 -29.01304 -28.35050 -26.03602 -25.83759 -25.50066 -24.29923 -23.28565 -22.15948 -21.75110 -20.28163 -19.84415 -19.19120 -18.99963 -17.59605 -17.31998 -16.69621 -16.31469 -15.89269 -15.76088 -15.48455 -14.99860 -14.80046 -14.41381 -13.88424 -13.74081 -13.57775 -13.42003 -13.26942 -13.02715 -12.85433 -12.76321 -12.55809 -12.52230 -12.32951 -11.61588 -11.52293 -11.23014 -11.12474 -10.92497 -10.87599 -10.70325 -10.59718 -10.55219 -10.52357 -10.36118 -10.06792 -9.97214 -9.87563 -9.32749 -9.17236 -9.13694 -8.92209 -8.63415 -7.05073 -6.10161 -3.11319 1.14585 2.17566 2.46835 2.99339 3.12484 3.51377 3.56101 3.70142 4.05012 4.18993 4.20717 4.42033 4.45883 4.51911 4.58296 4.67725 4.71553 4.82274 4.97995 5.19117 5.28498 5.29738 5.32759 5.37685 5.40492 5.40854 5.46891 5.54811 5.56483 5.59371 5.60148 5.64832 5.66358 5.77086 5.80743 5.84256 5.93043 6.03532 6.06830 6.20135 6.29287 6.31277 6.38802 6.41159 6.53072 6.62747 6.70611 6.98915 7.40395 7.81414 7.90204 8.04820 8.74596 9.20976 10.07291 10.21157 11.37541 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.002851 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.516621 B = 9819.578450 C =11407.285875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.082 2.918 4 H -0.296 1.296 5 H -0.288 1.288 6 H -0.295 1.295 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.189 3.811 11 H 0.056 0.944 12 C -0.145 4.145 13 C -0.116 4.116 14 C -0.105 4.105 15 H 0.105 0.895 16 C 0.099 3.901 17 N -0.596 5.596 18 C 0.601 3.399 19 O -0.540 6.540 20 C -0.030 4.030 21 C -0.202 4.202 22 C -0.009 4.009 23 N -0.277 5.277 24 N -0.244 5.244 25 C 0.107 3.893 26 C -0.139 4.139 27 C -0.136 4.136 28 C -0.142 4.142 29 C 0.117 3.883 30 C -0.103 4.103 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.368 0.632 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.169 0.831 41 H 0.185 0.815 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.093 0.907 49 H 0.082 0.918 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 -21.614 -1.375 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.913 3.087 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.222 1.222 7 C -0.464 4.464 8 H 0.083 0.917 9 N -0.380 5.380 10 C 0.079 3.921 11 H 0.074 0.926 12 C -0.186 4.186 13 C -0.154 4.154 14 C -0.124 4.124 15 H 0.123 0.877 16 C -0.024 4.024 17 N -0.329 5.329 18 C 0.389 3.611 19 O -0.418 6.418 20 C -0.158 4.158 21 C -0.231 4.231 22 C -0.184 4.184 23 N -0.109 5.109 24 N -0.031 5.031 25 C 0.007 3.993 26 C -0.177 4.177 27 C -0.174 4.174 28 C -0.180 4.180 29 C -0.004 4.004 30 C -0.123 4.123 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.204 0.796 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.186 0.814 41 H 0.202 0.798 42 H 0.172 0.828 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.112 0.888 49 H 0.100 0.900 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.113 -19.674 -1.141 20.952 hybrid contribution 0.941 -1.577 -0.097 1.839 sum -6.172 -21.251 -1.239 22.163 Atomic orbital electron populations 1.70855 1.06046 1.28474 1.53329 1.25760 0.97037 1.01013 1.00409 0.83208 0.73858 0.75418 0.76223 1.22342 1.21430 1.22183 1.20063 0.92019 0.85752 1.48608 0.91682 1.42671 1.04893 1.00678 1.89759 1.20603 0.93735 0.84958 0.92843 0.92611 1.22959 0.98979 0.95987 1.00656 1.22432 1.00719 0.97213 0.95045 1.23208 0.95801 0.96096 0.97270 0.87728 1.22424 0.86981 0.92465 1.00482 1.48033 1.05343 1.11527 1.67986 1.16498 0.81307 0.85167 0.78143 1.90761 1.53413 1.50034 1.47627 1.21374 0.86217 0.96225 1.11986 1.22785 1.01269 0.91836 1.07177 1.23570 0.88126 1.00724 1.05990 1.73053 1.25728 0.94485 1.17665 1.45804 1.05337 1.06275 1.45696 1.23939 0.80524 0.95797 0.99077 1.23328 0.93943 1.01501 0.98972 1.22689 0.96644 1.01773 0.96266 1.23356 0.94177 1.03709 0.96761 1.22639 0.92670 0.82454 1.02646 1.23667 0.93815 0.95410 0.99409 0.89114 0.93370 0.79623 0.90862 0.92842 0.91858 0.92119 0.90604 0.91041 0.81393 0.79810 0.82788 0.88470 0.90356 0.89259 0.90199 0.90225 0.88830 0.89997 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.12 13.70 55.49 0.76 -28.36 16 2 C -0.04 -1.28 5.50 -17.43 -0.10 -1.37 16 3 Si 1.08 25.85 29.92 -169.99 -5.09 20.77 16 4 H -0.30 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.30 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.33 -9.13 9.95 -15.06 -0.15 -9.28 16 8 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -17.63 4.82 -52.62 -0.25 -17.88 16 10 C 0.19 3.51 3.26 -67.10 -0.22 3.29 16 11 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.15 -2.39 6.58 -25.69 -0.17 -2.56 16 13 C -0.12 -1.50 5.57 -25.17 -0.14 -1.64 16 14 C -0.10 -1.20 4.18 -87.26 -0.36 -1.57 16 15 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.10 1.08 4.25 -3.19 -0.01 1.07 16 17 N -0.60 -8.73 3.33 -170.83 -0.57 -9.30 16 18 C 0.60 9.67 7.82 -12.64 -0.10 9.57 16 19 O -0.54 -10.24 14.71 5.25 0.08 -10.17 16 20 C -0.03 -0.41 6.92 -82.06 -0.57 -0.98 16 21 C -0.20 -2.23 9.43 -38.98 -0.37 -2.59 16 22 C -0.01 -0.09 12.03 -17.42 -0.21 -0.30 16 23 N -0.28 -3.47 11.14 30.59 0.34 -3.12 16 24 N -0.24 -3.26 3.46 -49.90 -0.17 -3.43 16 25 C 0.11 1.29 4.45 -67.12 -0.30 0.99 16 26 C -0.14 -1.34 7.74 -25.92 -0.20 -1.55 16 27 C -0.14 -1.10 8.08 -25.92 -0.21 -1.31 16 28 C -0.14 -1.42 7.80 -25.92 -0.20 -1.62 16 29 C 0.12 1.99 4.53 -1.47 -0.01 1.99 16 30 C -0.10 -1.56 4.13 -86.37 -0.36 -1.92 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.26 7.82 6.77 -40.82 -0.28 7.54 16 33 H 0.37 9.17 4.27 -40.82 -0.17 9.00 16 34 H 0.07 1.43 7.91 -51.93 -0.41 1.02 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.89 7.24 -51.93 -0.38 0.52 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.74 6.61 -51.93 -0.34 0.39 16 39 H 0.07 0.65 6.98 -51.93 -0.36 0.29 16 40 H 0.17 1.42 4.65 -52.49 -0.24 1.17 16 41 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.15 2.14 5.63 -51.93 -0.29 1.85 16 43 H 0.10 0.97 7.74 -51.93 -0.40 0.56 16 44 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 45 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.09 0.96 8.04 -51.93 -0.42 0.55 16 49 H 0.08 1.56 6.43 -51.93 -0.33 1.22 16 50 H 0.08 1.57 7.99 -51.93 -0.41 1.15 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -33.34 384.02 -10.27 -43.60 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -7.48 Total: 11.88 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -3.67 Total: -9.78 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.11 Total: -62.10 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.09 Total: 20.77 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.34 -10.27 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026268677.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.241 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds