Wall clock time and date at job start Wed Apr 1 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47012 * 270.00257 * 3 2 1 5 5 H 1.48501 * 109.47258 * 29.99957 * 3 2 1 6 6 H 1.48497 * 109.47580 * 150.00051 * 3 2 1 7 7 C 1.38810 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99770 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.47665 * 134.45723 * 179.97438 * 9 7 2 11 11 C 1.53517 * 85.97663 * 204.28545 * 10 9 7 12 12 C 1.47671 * 134.45250 * 359.96094 * 9 7 2 13 13 C 1.52675 * 113.57073 * 91.02015 * 11 10 9 14 14 C 1.53341 * 109.10767 * 73.80664 * 13 11 10 15 15 N 1.46873 * 108.76220 * 52.40790 * 14 13 11 16 16 C 1.34780 * 120.46912 * 124.47313 * 15 14 13 17 17 O 1.21280 * 119.99511 * 355.40944 * 16 15 14 18 18 C 1.50695 * 120.00079 * 175.68979 * 16 15 14 19 19 H 1.09000 * 109.72554 * 35.97043 * 18 16 15 20 20 C 1.53442 * 109.72274 * 275.34786 * 18 16 15 21 21 C 1.53155 * 109.18637 * 191.73347 * 20 18 16 22 22 C 1.53237 * 109.56721 * 69.42948 * 21 20 18 23 23 N 1.46589 * 108.80419 * 309.45712 * 22 21 20 24 24 N 1.39658 * 127.54517 * 197.33024 * 23 22 21 25 25 C 1.31031 * 108.12123 * 179.97438 * 24 23 22 26 26 C 1.40057 * 108.25792 * 0.02562 * 25 24 23 27 27 C 1.34749 * 107.79595 * 0.02562 * 26 25 24 28 28 C 1.46889 * 119.06923 * 304.73907 * 15 14 13 29 29 C 1.52663 * 113.56006 * 222.23618 * 11 10 9 30 30 H 0.97000 * 119.99884 * 359.97438 * 1 2 3 31 31 H 1.09001 * 113.78879 * 90.02186 * 10 9 7 32 32 H 1.08998 * 113.79301 * 318.55140 * 10 9 7 33 33 H 1.09003 * 113.79181 * 41.44083 * 12 9 7 34 34 H 1.09002 * 113.78466 * 269.97749 * 12 9 7 35 35 H 1.08998 * 109.52824 * 313.91855 * 13 11 10 36 36 H 1.08995 * 109.59301 * 193.73334 * 13 11 10 37 37 H 1.08996 * 109.58650 * 292.61852 * 14 13 11 38 38 H 1.09005 * 109.70506 * 172.25873 * 14 13 11 39 39 H 1.08995 * 109.52055 * 311.64836 * 20 18 16 40 40 H 1.09001 * 109.51913 * 71.76510 * 20 18 16 41 41 H 1.09000 * 109.45351 * 189.45732 * 21 20 18 42 42 H 1.08997 * 109.45816 * 309.42144 * 21 20 18 43 43 H 1.09001 * 109.58351 * 69.25922 * 22 21 20 44 44 H 1.09002 * 109.58217 * 189.66341 * 22 21 20 45 45 H 1.07999 * 125.86759 * 179.97438 * 25 24 23 46 46 H 1.08001 * 126.10228 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.59184 * 175.04370 * 28 15 14 48 48 H 1.08995 * 109.59354 * 295.47866 * 28 15 14 49 49 H 1.09004 * 109.53601 * 46.08013 * 29 11 10 50 50 H 1.09001 * 109.53113 * 166.22935 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7213 -3.8108 -0.0015 11 6 0.3471 -4.0808 -0.6304 12 6 -0.1044 -2.7567 0.0007 13 6 0.3592 -4.0578 -2.1569 14 6 1.0355 -5.3336 -2.6728 15 7 0.3903 -6.4959 -2.0484 16 6 -0.1326 -7.4780 -2.8091 17 8 -0.1470 -7.3670 -4.0167 18 6 -0.7050 -8.7110 -2.1588 19 1 -1.1951 -8.4399 -1.2237 20 6 0.4181 -9.7191 -1.8816 21 6 -0.1991 -11.0673 -1.4983 22 6 -0.8779 -11.6880 -2.7239 23 7 -1.7648 -10.6900 -3.3290 24 7 -2.8046 -10.9128 -4.2343 25 6 -3.3460 -9.7558 -4.5258 26 6 -2.6649 -8.7606 -3.8136 27 6 -1.7001 -9.3601 -3.0887 28 6 0.3177 -6.5702 -0.5832 29 6 -0.3580 -5.3056 -0.0532 30 1 -0.4850 0.8401 0.0004 31 1 1.8395 -4.2349 0.9956 32 1 2.5588 -4.0338 -0.6624 33 1 -0.7175 -2.1421 -0.6585 34 1 -0.5290 -2.8674 0.9984 35 1 0.9134 -3.1857 -2.5038 36 1 -0.6639 -4.0113 -2.5298 37 1 2.0933 -5.3180 -2.4106 38 1 0.9283 -5.3942 -3.7559 39 1 1.0287 -9.8393 -2.7765 40 1 1.0394 -9.3561 -1.0629 41 1 0.5835 -11.7358 -1.1393 42 1 -0.9381 -10.9178 -0.7113 43 1 -0.1204 -11.9901 -3.4473 44 1 -1.4606 -12.5569 -2.4179 45 1 -4.1745 -9.5968 -5.2002 46 1 -2.8754 -7.7016 -3.8405 47 1 -0.2643 -7.4439 -0.2899 48 1 1.3239 -6.6436 -0.1706 49 1 -0.2931 -5.2847 1.0347 50 1 -1.4052 -5.2996 -0.3559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035739611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:35 Heat of formation + Delta-G solvation = 102.504802 kcal Electronic energy + Delta-G solvation = -31125.876750 eV Core-core repulsion = 27156.505052 eV Total energy + Delta-G solvation = -3969.371698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.83403 -40.29575 -38.76497 -36.66797 -35.79174 -33.08756 -32.43756 -31.01075 -30.52086 -30.44434 -28.41667 -26.89535 -25.42038 -24.97419 -23.59193 -23.03906 -22.60116 -21.45039 -21.14375 -19.90549 -18.96441 -17.89795 -17.06020 -16.81275 -16.66458 -15.84558 -15.52389 -15.35064 -14.88463 -14.75521 -14.66532 -14.56014 -13.97851 -13.85868 -13.77310 -13.72393 -13.47647 -13.08225 -12.78410 -12.62310 -12.39213 -12.24412 -12.12011 -11.83557 -11.72920 -11.50824 -11.45541 -11.12028 -11.05666 -10.87634 -10.84838 -10.72946 -10.37377 -10.18102 -9.82100 -9.72338 -9.57305 -9.37584 -9.27054 -8.79185 -8.58403 -8.47475 -6.86369 -5.76518 -3.08342 1.72692 2.26106 2.56568 2.75121 3.04875 3.38504 3.43452 3.45274 3.95876 4.10701 4.20456 4.28696 4.45255 4.53719 4.70131 4.79992 4.80826 4.95476 5.01071 5.11383 5.17111 5.20419 5.25709 5.29564 5.31044 5.35272 5.47595 5.50309 5.57502 5.64148 5.67232 5.69834 5.83586 5.88819 5.92996 6.09089 6.15646 6.24918 6.28330 6.41076 6.59473 6.59756 6.62734 6.79146 6.83994 6.86334 7.23203 7.36874 7.41514 7.58591 7.62357 7.99178 8.14584 9.05298 9.71534 10.61376 11.40376 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026310 B = 0.002387 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.961749 B =11728.278059 C =12118.656891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.108 4.108 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.114 3.886 15 N -0.601 5.601 16 C 0.523 3.477 17 O -0.530 6.530 18 C -0.048 4.048 19 H 0.117 0.883 20 C -0.116 4.116 21 C -0.133 4.133 22 C 0.132 3.868 23 N -0.370 5.370 24 N -0.297 5.297 25 C 0.044 3.956 26 C -0.241 4.241 27 C 0.100 3.900 28 C 0.106 3.894 29 C -0.120 4.120 30 H 0.253 0.747 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.183 0.817 46 H 0.145 0.855 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -23.508 -1.420 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.109 4.109 12 C 0.048 3.952 13 C -0.134 4.134 14 C -0.008 4.008 15 N -0.334 5.334 16 C 0.309 3.691 17 O -0.406 6.406 18 C -0.071 4.071 19 H 0.134 0.866 20 C -0.154 4.154 21 C -0.172 4.172 22 C 0.011 3.989 23 N -0.154 5.154 24 N -0.118 5.118 25 C -0.142 4.142 26 C -0.270 4.270 27 C -0.027 4.027 28 C -0.017 4.017 29 C -0.159 4.159 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.200 0.800 46 H 0.163 0.837 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.011 -24.464 -2.228 24.647 hybrid contribution 0.443 1.959 0.429 2.054 sum -1.568 -22.504 -1.799 22.631 Atomic orbital electron populations 1.69816 1.04963 1.25257 1.56752 1.24759 0.95637 0.97430 1.02605 0.86163 0.78578 0.83651 0.77617 1.21557 1.21702 1.20785 1.18998 0.90189 0.82099 1.43666 0.90443 1.45950 1.02353 0.99159 1.86026 1.22588 0.94375 0.86670 0.96322 1.22382 0.97911 0.95501 0.95147 1.22230 0.88084 0.88390 0.96520 1.21476 1.01004 0.96806 0.94101 1.21714 0.96165 0.84173 0.98725 1.48075 1.57479 1.20992 1.06879 1.19980 0.78240 0.83624 0.87224 1.90729 1.56486 1.79348 1.13990 1.20148 0.94964 0.93884 0.98070 0.86581 1.21641 0.96629 0.93597 1.03524 1.21953 1.01112 0.97184 0.96917 1.21775 0.91916 0.90406 0.94840 1.48577 1.26624 1.04969 1.35262 1.77245 1.02012 1.23447 1.09085 1.23891 1.00273 0.89828 1.00169 1.21028 1.00643 1.00687 1.04629 1.20216 0.97937 0.84750 0.99814 1.21782 1.01542 0.99045 0.79286 1.21759 0.99725 0.93894 1.00518 0.93698 0.95213 0.94205 0.90993 0.95782 0.89478 0.92049 0.91416 0.89340 0.90420 0.89332 0.88427 0.90205 0.89964 0.88943 0.80020 0.83711 0.90325 0.90965 0.90568 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 11.39 55.49 0.63 -26.27 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.07 10.70 -15.06 -0.16 -6.23 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -14.88 3.53 -179.77 -0.64 -15.52 16 10 C 0.13 2.37 7.73 -3.14 -0.02 2.35 16 11 C -0.11 -1.81 0.77 -154.43 -0.12 -1.93 16 12 C 0.17 3.85 6.64 -3.17 -0.02 3.83 16 13 C -0.10 -1.57 5.21 -26.72 -0.14 -1.71 16 14 C 0.11 1.59 6.30 -3.66 -0.02 1.57 16 15 N -0.60 -7.32 2.95 -172.95 -0.51 -7.83 16 16 C 0.52 6.74 6.62 -10.99 -0.07 6.66 16 17 O -0.53 -8.88 15.02 5.56 0.08 -8.80 16 18 C -0.05 -0.47 2.10 -92.61 -0.19 -0.66 16 19 H 0.12 0.92 6.13 -51.93 -0.32 0.60 16 20 C -0.12 -0.82 5.28 -26.42 -0.14 -0.95 16 21 C -0.13 -0.68 5.93 -26.53 -0.16 -0.83 16 22 C 0.13 0.97 7.28 -3.87 -0.03 0.94 16 23 N -0.37 -4.29 4.04 -56.95 -0.23 -4.52 16 24 N -0.30 -3.93 12.62 30.70 0.39 -3.54 16 25 C 0.04 0.53 12.03 -17.21 -0.21 0.32 16 26 C -0.24 -3.12 9.65 -40.14 -0.39 -3.51 16 27 C 0.10 1.20 5.75 -82.22 -0.47 0.73 16 28 C 0.11 1.05 6.16 -3.90 -0.02 1.03 16 29 C -0.12 -1.51 5.24 -26.97 -0.14 -1.65 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.03 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.04 0.72 7.41 -51.93 -0.38 0.34 16 33 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 34 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.09 1.66 8.01 -51.93 -0.42 1.25 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.91 7.49 -51.93 -0.39 0.52 16 38 H 0.09 1.32 6.97 -51.93 -0.36 0.96 16 39 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 46 H 0.15 1.87 8.06 -52.49 -0.42 1.44 16 47 H 0.08 0.56 5.37 -51.93 -0.28 0.29 16 48 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 49 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 50 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -34.80 387.47 -9.83 -44.64 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.97 Total: -0.57 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.41 Total: -0.36 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.36 Total: -57.66 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.08 Total: -8.80 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.80 -9.83 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035739611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.142 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds