Wall clock time and date at job start Wed Apr 1 2020 02:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47012 * 270.00257 * 3 2 1 5 5 H 1.48501 * 109.47258 * 29.99957 * 3 2 1 6 6 H 1.48497 * 109.47580 * 150.00051 * 3 2 1 7 7 C 1.38810 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99770 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.47665 * 134.45723 * 179.97438 * 9 7 2 11 11 C 1.53517 * 85.97663 * 204.28545 * 10 9 7 12 12 C 1.47671 * 134.45250 * 359.96094 * 9 7 2 13 13 C 1.52675 * 113.57073 * 91.02015 * 11 10 9 14 14 C 1.53341 * 109.10767 * 73.80664 * 13 11 10 15 15 N 1.46873 * 108.76220 * 52.40790 * 14 13 11 16 16 C 1.34780 * 120.46912 * 124.47313 * 15 14 13 17 17 O 1.21280 * 119.99511 * 355.40944 * 16 15 14 18 18 C 1.50695 * 120.00079 * 175.68979 * 16 15 14 19 19 H 1.09000 * 109.72554 * 35.97043 * 18 16 15 20 20 C 1.53442 * 109.72274 * 275.34786 * 18 16 15 21 21 C 1.53155 * 109.18637 * 191.73347 * 20 18 16 22 22 C 1.53237 * 109.56721 * 69.42948 * 21 20 18 23 23 N 1.46589 * 108.80419 * 309.45712 * 22 21 20 24 24 N 1.39658 * 127.54517 * 197.33024 * 23 22 21 25 25 C 1.31031 * 108.12123 * 179.97438 * 24 23 22 26 26 C 1.40057 * 108.25792 * 0.02562 * 25 24 23 27 27 C 1.34749 * 107.79595 * 0.02562 * 26 25 24 28 28 C 1.46889 * 119.06923 * 304.73907 * 15 14 13 29 29 C 1.52663 * 113.56006 * 222.23618 * 11 10 9 30 30 H 0.97000 * 119.99884 * 359.97438 * 1 2 3 31 31 H 1.09001 * 113.78879 * 90.02186 * 10 9 7 32 32 H 1.08998 * 113.79301 * 318.55140 * 10 9 7 33 33 H 1.09003 * 113.79181 * 41.44083 * 12 9 7 34 34 H 1.09002 * 113.78466 * 269.97749 * 12 9 7 35 35 H 1.08998 * 109.52824 * 313.91855 * 13 11 10 36 36 H 1.08995 * 109.59301 * 193.73334 * 13 11 10 37 37 H 1.08996 * 109.58650 * 292.61852 * 14 13 11 38 38 H 1.09005 * 109.70506 * 172.25873 * 14 13 11 39 39 H 1.08995 * 109.52055 * 311.64836 * 20 18 16 40 40 H 1.09001 * 109.51913 * 71.76510 * 20 18 16 41 41 H 1.09000 * 109.45351 * 189.45732 * 21 20 18 42 42 H 1.08997 * 109.45816 * 309.42144 * 21 20 18 43 43 H 1.09001 * 109.58351 * 69.25922 * 22 21 20 44 44 H 1.09002 * 109.58217 * 189.66341 * 22 21 20 45 45 H 1.07999 * 125.86759 * 179.97438 * 25 24 23 46 46 H 1.08001 * 126.10228 * 180.02562 * 26 25 24 47 47 H 1.08998 * 109.59184 * 175.04370 * 28 15 14 48 48 H 1.08995 * 109.59354 * 295.47866 * 28 15 14 49 49 H 1.09004 * 109.53601 * 46.08013 * 29 11 10 50 50 H 1.09001 * 109.53113 * 166.22935 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7213 -3.8108 -0.0015 11 6 0.3471 -4.0808 -0.6304 12 6 -0.1044 -2.7567 0.0007 13 6 0.3592 -4.0578 -2.1569 14 6 1.0355 -5.3336 -2.6728 15 7 0.3903 -6.4959 -2.0484 16 6 -0.1326 -7.4780 -2.8091 17 8 -0.1470 -7.3670 -4.0167 18 6 -0.7050 -8.7110 -2.1588 19 1 -1.1951 -8.4399 -1.2237 20 6 0.4181 -9.7191 -1.8816 21 6 -0.1991 -11.0673 -1.4983 22 6 -0.8779 -11.6880 -2.7239 23 7 -1.7648 -10.6900 -3.3290 24 7 -2.8046 -10.9128 -4.2343 25 6 -3.3460 -9.7558 -4.5258 26 6 -2.6649 -8.7606 -3.8136 27 6 -1.7001 -9.3601 -3.0887 28 6 0.3177 -6.5702 -0.5832 29 6 -0.3580 -5.3056 -0.0532 30 1 -0.4850 0.8401 0.0004 31 1 1.8395 -4.2349 0.9956 32 1 2.5588 -4.0338 -0.6624 33 1 -0.7175 -2.1421 -0.6585 34 1 -0.5290 -2.8674 0.9984 35 1 0.9134 -3.1857 -2.5038 36 1 -0.6639 -4.0113 -2.5298 37 1 2.0933 -5.3180 -2.4106 38 1 0.9283 -5.3942 -3.7559 39 1 1.0287 -9.8393 -2.7765 40 1 1.0394 -9.3561 -1.0629 41 1 0.5835 -11.7358 -1.1393 42 1 -0.9381 -10.9178 -0.7113 43 1 -0.1204 -11.9901 -3.4473 44 1 -1.4606 -12.5569 -2.4179 45 1 -4.1745 -9.5968 -5.2002 46 1 -2.8754 -7.7016 -3.8405 47 1 -0.2643 -7.4439 -0.2899 48 1 1.3239 -6.6436 -0.1706 49 1 -0.2931 -5.2847 1.0347 50 1 -1.4052 -5.2996 -0.3559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035739611.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:33 Heat of formation + Delta-G solvation = 80.424952 kcal Electronic energy + Delta-G solvation = -31126.834204 eV Core-core repulsion = 27156.505052 eV Total energy + Delta-G solvation = -3970.329152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.67532 -41.45647 -40.08168 -37.32736 -37.05912 -34.42653 -33.79840 -32.08639 -31.94093 -31.25950 -29.30577 -28.55371 -26.74077 -26.13810 -24.90226 -24.17061 -23.23374 -22.90326 -22.13773 -20.94316 -19.73763 -19.01833 -18.67094 -18.07655 -17.70491 -16.89891 -16.69748 -16.37810 -16.21325 -16.07084 -15.62268 -15.44824 -15.27360 -15.03965 -14.83621 -14.67885 -14.40199 -14.27382 -14.00327 -13.65308 -13.60567 -13.41267 -13.09328 -13.02326 -12.89668 -12.79743 -12.60401 -12.48704 -12.17888 -12.10622 -12.04522 -11.96009 -11.63487 -11.58070 -11.49520 -11.16112 -10.99388 -10.79162 -10.69817 -10.14175 -9.57234 -9.47295 -8.84184 -7.87161 -5.18529 0.84945 1.44860 1.46227 1.46409 1.54455 1.67696 1.83417 2.10166 2.49281 3.25789 3.33992 3.45538 3.49898 3.54244 3.64540 3.71801 3.87108 3.96485 4.07031 4.12919 4.19041 4.22721 4.33703 4.36437 4.48472 4.54572 4.66673 4.68513 4.72745 4.74842 4.80020 4.82225 4.87290 4.91413 4.94668 4.97329 5.01004 5.09191 5.18719 5.20491 5.22017 5.26080 5.33119 5.39610 5.56718 5.63740 5.71273 5.80720 6.00266 6.08195 6.45573 6.74181 6.96634 7.16601 7.66097 8.63227 9.29567 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026310 B = 0.002387 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.961749 B =11728.278059 C =12118.656891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.972 3.028 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.227 4.227 8 H 0.081 0.919 9 N -0.641 5.641 10 C 0.131 3.869 11 C -0.081 4.081 12 C 0.166 3.834 13 C -0.089 4.089 14 C 0.126 3.874 15 N -0.598 5.598 16 C 0.523 3.477 17 O -0.576 6.576 18 C -0.042 4.042 19 H 0.145 0.855 20 C -0.114 4.114 21 C -0.122 4.122 22 C 0.116 3.884 23 N -0.370 5.370 24 N -0.326 5.326 25 C 0.036 3.964 26 C -0.271 4.271 27 C 0.096 3.904 28 C 0.107 3.893 29 C -0.115 4.115 30 H 0.245 0.755 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.017 0.983 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.135 0.865 47 H 0.120 0.880 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -26.538 0.623 26.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.801 3.199 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.367 5.367 10 C 0.007 3.993 11 C -0.082 4.082 12 C 0.041 3.959 13 C -0.128 4.128 14 C 0.003 3.997 15 N -0.330 5.330 16 C 0.311 3.689 17 O -0.455 6.455 18 C -0.064 4.064 19 H 0.162 0.838 20 C -0.152 4.152 21 C -0.160 4.160 22 C -0.003 4.003 23 N -0.154 5.154 24 N -0.148 5.148 25 C -0.148 4.148 26 C -0.301 4.301 27 C -0.032 4.032 28 C -0.014 4.014 29 C -0.154 4.154 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.149 0.851 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.220 0.780 46 H 0.153 0.847 47 H 0.137 0.863 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.440 -27.553 -0.155 27.557 hybrid contribution -0.026 2.881 -0.246 2.892 sum -0.466 -24.672 -0.401 24.679 Atomic orbital electron populations 1.70015 1.06364 1.25258 1.58749 1.25557 0.96468 1.00680 1.03592 0.85161 0.77741 0.79607 0.77351 1.21594 1.22341 1.19314 1.19395 0.90722 0.83634 1.41788 0.90075 1.46341 1.03602 1.00690 1.86070 1.22786 0.95543 0.83285 0.97694 1.22079 0.96619 0.94818 0.94681 1.22185 0.86893 0.91100 0.95750 1.21337 1.00151 0.97044 0.94229 1.21429 0.96550 0.83659 0.98055 1.48105 1.56903 1.19998 1.08009 1.20545 0.77287 0.84355 0.86703 1.90717 1.58202 1.80360 1.16262 1.20276 0.95482 0.92746 0.97929 0.83819 1.21730 0.95654 0.93885 1.03907 1.21990 1.01958 0.96397 0.95693 1.22234 0.91745 0.90406 0.95940 1.48951 1.26345 1.05581 1.34562 1.77173 1.03269 1.24058 1.10286 1.24278 1.00767 0.89466 1.00305 1.21167 1.02102 1.00560 1.06237 1.20572 0.97788 0.85172 0.99687 1.22024 1.03255 0.98845 0.77278 1.21742 0.99472 0.92820 1.01381 0.94564 0.92846 0.93153 0.95225 0.96510 0.93018 0.93080 0.90204 0.90750 0.92159 0.86352 0.85106 0.89049 0.89714 0.87639 0.78007 0.84696 0.86252 0.88788 0.88906 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.02 11.39 21.65 0.25 -57.77 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 46.04 29.55 68.60 2.03 48.06 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.23 -12.55 10.70 84.03 0.90 -11.65 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.64 -31.56 3.53 -722.66 -2.55 -34.11 16 10 C 0.13 4.66 7.73 86.32 0.67 5.32 16 11 C -0.08 -2.62 0.77 -52.04 -0.04 -2.66 16 12 C 0.17 7.59 6.64 86.31 0.57 8.16 16 13 C -0.09 -2.97 5.21 30.60 0.16 -2.81 16 14 C 0.13 3.40 6.30 86.42 0.54 3.94 16 15 N -0.60 -12.89 2.95 -819.49 -2.42 -15.31 16 16 C 0.52 12.41 6.62 87.66 0.58 12.99 16 17 O -0.58 -19.28 15.02 -3.03 -0.05 -19.33 16 18 C -0.04 -0.67 2.10 -12.08 -0.03 -0.70 16 19 H 0.14 1.51 6.13 -2.39 -0.01 1.50 16 20 C -0.11 -1.08 5.28 30.79 0.16 -0.92 16 21 C -0.12 -0.64 5.93 30.73 0.18 -0.46 16 22 C 0.12 1.38 7.28 86.44 0.63 2.01 16 23 N -0.37 -7.98 4.04 -334.10 -1.35 -9.33 16 24 N -0.33 -8.47 12.62 -56.80 -0.72 -9.19 16 25 C 0.04 0.88 12.03 85.25 1.03 1.91 16 26 C -0.27 -7.06 9.65 21.91 0.21 -6.85 16 27 C 0.10 2.18 5.75 41.28 0.24 2.41 16 28 C 0.11 1.59 6.16 86.26 0.53 2.12 16 29 C -0.12 -2.52 5.24 30.44 0.16 -2.36 16 30 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.05 1.71 8.07 -2.39 -0.02 1.69 16 32 H 0.05 1.69 7.41 -2.39 -0.02 1.67 16 33 H 0.03 1.58 7.12 -2.39 -0.02 1.57 16 34 H 0.02 0.79 8.09 -2.39 -0.02 0.77 16 35 H 0.05 2.07 8.01 -2.39 -0.02 2.06 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 1.99 7.49 -2.39 -0.02 1.97 16 38 H 0.07 2.25 6.97 -2.38 -0.02 2.24 16 39 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 40 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.09 0.35 8.12 -2.39 -0.02 0.33 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.20 3.62 8.06 -2.91 -0.02 3.59 16 46 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 47 H 0.12 0.90 5.37 -2.39 -0.01 0.88 16 48 H 0.09 1.12 8.07 -2.39 -0.02 1.10 16 49 H 0.09 1.81 8.12 -2.38 -0.02 1.79 16 50 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -81.57 387.47 3.09 -78.48 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.93 Total: 11.59 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.96 Total: 6.90 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -6.79 Total: -125.70 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -81.57 3.09 -78.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035739611.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.901 kcal (2) G-P(sol) polarization free energy of solvation -81.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds