Wall clock time and date at job start Wed Apr 1 2020 03:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48493 * 109.47085 * 5.17128 * 3 2 1 5 5 H 1.48497 * 109.46925 * 125.17036 * 3 2 1 6 6 H 1.48504 * 109.46877 * 245.16945 * 3 2 1 7 7 C 1.38819 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99874 * 5.97790 * 7 2 1 9 9 N 1.36935 * 120.00145 * 185.98890 * 7 2 1 10 10 C 1.47166 * 135.99920 * 352.25424 * 9 7 2 11 11 C 1.52643 * 87.97097 * 206.72342 * 10 9 7 12 12 C 1.47156 * 136.00133 * 172.62946 * 9 7 2 13 13 C 1.52556 * 113.89577 * 88.17153 * 11 10 9 14 14 C 1.53358 * 109.12997 * 190.30682 * 13 11 10 15 15 N 1.46882 * 108.75039 * 307.75626 * 14 13 11 16 16 C 1.34769 * 120.46501 * 235.60599 * 15 14 13 17 17 O 1.21280 * 120.00094 * 185.03055 * 16 15 14 18 18 C 1.50701 * 120.00025 * 5.02833 * 16 15 14 19 19 H 1.08995 * 109.47117 * 322.50930 * 18 16 15 20 20 C 1.53123 * 109.47203 * 202.50578 * 18 16 15 21 21 C 1.53355 * 109.53181 * 170.00436 * 20 18 16 22 22 C 1.50859 * 108.41261 * 49.97941 * 21 20 18 23 23 N 1.33580 * 128.03170 * 163.29994 * 22 21 20 24 24 C 1.30750 * 109.14513 * 180.02562 * 23 22 21 25 25 N 1.35305 * 108.76979 * 359.97438 * 24 23 22 26 26 H 0.97002 * 126.49649 * 179.97438 * 25 24 23 27 27 C 1.35026 * 123.99123 * 343.29930 * 22 21 20 28 28 C 1.50652 * 124.45174 * 359.89723 * 27 22 21 29 29 C 1.46899 * 119.07168 * 55.62596 * 15 14 13 30 30 C 1.52550 * 114.26383 * 220.76294 * 11 10 9 31 31 H 0.97002 * 120.00200 * 174.95060 * 1 2 3 32 32 H 1.09005 * 113.48642 * 321.41570 * 10 9 7 33 33 H 1.08997 * 113.48861 * 91.92345 * 10 9 7 34 34 H 1.08996 * 113.48718 * 268.07973 * 12 9 7 35 35 H 1.09001 * 113.48976 * 38.51902 * 12 9 7 36 36 H 1.09001 * 109.53011 * 310.20589 * 13 11 10 37 37 H 1.09006 * 109.52515 * 70.41177 * 13 11 10 38 38 H 1.09000 * 109.58717 * 187.97825 * 14 13 11 39 39 H 1.08992 * 109.58993 * 67.54071 * 14 13 11 40 40 H 1.08994 * 109.46134 * 290.02063 * 20 18 16 41 41 H 1.09006 * 109.46057 * 49.98902 * 20 18 16 42 42 H 1.09001 * 109.67380 * 169.71622 * 21 20 18 43 43 H 1.09005 * 109.67755 * 290.24761 * 21 20 18 44 44 H 1.08004 * 125.61519 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.68894 * 223.82178 * 28 27 22 46 46 H 1.08995 * 109.67743 * 103.27201 * 28 27 22 47 47 H 1.08998 * 109.59179 * 184.58731 * 29 15 14 48 48 H 1.09001 * 109.71481 * 64.21597 * 29 15 14 49 49 H 1.09007 * 109.52504 * 289.75600 * 30 11 10 50 50 H 1.09002 * 109.52498 * 49.95662 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2902 2.7435 0.1262 5 1 3.1960 1.6431 1.1445 6 1 3.0068 1.7524 -1.2707 7 6 2.0103 -1.2022 -0.0005 8 1 1.4746 -2.1350 -0.0984 9 7 3.3740 -1.2055 0.1232 10 6 4.4384 -0.1892 0.1351 11 6 5.3939 -1.2622 -0.3804 12 6 4.4188 -2.2273 0.2959 13 6 5.4301 -1.3784 -1.9011 14 6 6.2117 -2.6392 -2.2903 15 7 7.5128 -2.6172 -1.6090 16 6 8.6561 -2.7132 -2.3161 17 8 9.7209 -2.7861 -1.7402 18 6 8.6113 -2.7299 -3.8223 19 1 7.7407 -3.2958 -4.1537 20 6 9.8838 -3.3877 -4.3635 21 6 9.7336 -3.6323 -5.8699 22 6 9.2686 -2.3512 -6.5167 23 7 9.3019 -2.0235 -7.8113 24 6 8.8056 -0.8234 -7.9628 25 7 8.4372 -0.3484 -6.7506 26 1 8.0399 0.5171 -6.5665 27 6 8.7305 -1.3151 -5.8383 28 6 8.5168 -1.2917 -4.3472 29 6 7.5504 -2.4897 -0.1460 30 6 6.7787 -1.2277 0.2585 31 1 -0.4850 -0.8368 -0.0739 32 1 4.2734 0.6209 -0.5753 33 1 4.6858 0.1690 1.1343 34 1 4.6608 -2.4291 1.3393 35 1 4.2369 -3.1360 -0.2780 36 1 4.4126 -1.4473 -2.2856 37 1 5.9211 -0.5009 -2.3219 38 1 6.3645 -2.6559 -3.3694 39 1 5.6538 -3.5240 -1.9843 40 1 10.7357 -2.7316 -4.1853 41 1 10.0453 -4.3385 -3.8555 42 1 10.6943 -3.9286 -6.2912 43 1 8.9986 -4.4185 -6.0426 44 1 8.7054 -0.2981 -8.9011 45 1 7.5311 -0.8835 -4.1238 46 1 9.2843 -0.6778 -3.8761 47 1 8.5849 -2.4081 0.1873 48 1 7.0869 -3.3638 0.3113 49 1 7.3172 -0.3450 -0.0864 50 1 6.6786 -1.1938 1.3434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035836465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:41 Heat of formation + Delta-G solvation = 77.745950 kcal Electronic energy + Delta-G solvation = -31221.882173 eV Core-core repulsion = 27251.436851 eV Total energy + Delta-G solvation = -3970.445322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.56748 -40.74710 -39.35432 -36.56762 -35.97577 -33.47175 -32.74947 -31.56816 -30.76423 -30.09714 -29.40548 -27.04584 -25.65838 -24.60567 -23.68768 -23.49064 -22.51323 -21.80474 -20.92464 -19.86244 -18.97193 -18.17822 -17.91421 -17.50755 -17.13097 -16.04156 -15.76027 -15.42401 -15.21280 -14.90452 -14.75443 -14.42602 -14.29115 -14.01256 -13.87103 -13.55598 -13.48638 -13.28197 -13.11606 -12.93749 -12.67061 -12.33538 -12.21498 -11.95489 -11.83148 -11.74978 -11.33862 -11.18269 -11.09799 -10.94267 -10.78294 -10.53909 -10.31045 -10.16110 -10.09962 -9.96898 -9.73563 -9.26903 -9.19748 -8.91722 -8.59460 -8.42508 -7.16599 -6.36038 -3.26747 1.73740 2.40626 2.81510 2.85770 2.94202 3.33516 3.38607 3.59296 4.08462 4.26573 4.43156 4.49073 4.54185 4.63919 4.70069 4.70804 4.77599 4.89578 4.95610 5.04384 5.09267 5.14602 5.22401 5.28090 5.30113 5.38126 5.44572 5.46639 5.58529 5.59225 5.64220 5.73882 5.78770 5.82326 5.88686 5.97595 6.01329 6.05224 6.09576 6.18378 6.22442 6.30803 6.35901 6.45566 6.48513 6.54356 6.87287 7.08710 7.08819 7.32436 7.80917 8.06431 8.19452 8.93631 9.46519 10.33894 11.16724 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.003045 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.148729 B = 9192.089816 C =10457.529890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.026 4.026 3 Si 1.072 2.928 4 H -0.296 1.296 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.302 4.302 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.106 3.894 11 C -0.102 4.102 12 C 0.132 3.868 13 C -0.101 4.101 14 C 0.105 3.895 15 N -0.605 5.605 16 C 0.521 3.479 17 O -0.543 6.543 18 C -0.101 4.101 19 H 0.100 0.900 20 C -0.098 4.098 21 C -0.034 4.034 22 C 0.006 3.994 23 N -0.487 5.487 24 C 0.178 3.822 25 N -0.559 5.559 26 H 0.421 0.579 27 C -0.023 4.023 28 C -0.031 4.031 29 C 0.115 3.885 30 C -0.116 4.116 31 H 0.261 0.739 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.036 0.964 35 H 0.042 0.958 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.208 0.792 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.941 -3.055 -11.183 23.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.224 4.224 3 Si 0.905 3.095 4 H -0.223 1.223 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.429 4.429 8 H 0.099 0.901 9 N -0.354 5.354 10 C -0.019 4.019 11 C -0.104 4.104 12 C 0.006 3.994 13 C -0.139 4.139 14 C -0.018 4.018 15 N -0.337 5.337 16 C 0.309 3.691 17 O -0.420 6.420 18 C -0.123 4.123 19 H 0.118 0.882 20 C -0.136 4.136 21 C -0.072 4.072 22 C -0.124 4.124 23 N -0.205 5.205 24 C -0.105 4.105 25 N -0.162 5.162 26 H 0.259 0.741 27 C -0.139 4.139 28 C -0.070 4.070 29 C -0.007 4.007 30 C -0.155 4.155 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.225 0.775 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.322 -2.001 -11.467 23.420 hybrid contribution -0.677 -0.513 0.622 1.053 sum 19.645 -2.514 -10.845 22.580 Atomic orbital electron populations 1.70914 1.05367 1.29440 1.52125 1.25720 0.96447 1.00934 0.99311 0.83664 0.73740 0.76050 0.76053 1.22341 1.21420 1.22323 1.20121 0.78401 0.95606 1.48743 0.90076 1.45959 1.01434 1.02243 1.85807 1.22655 0.87576 0.93544 0.98147 1.21895 0.92954 1.00360 0.95164 1.22332 0.87095 0.93178 0.96807 1.21508 1.01323 0.96551 0.94490 1.21913 0.83206 0.99557 0.97087 1.48141 1.06068 1.71887 1.07634 1.20447 0.83488 0.75895 0.89291 1.90679 1.29385 1.50052 1.71902 1.21337 1.01728 0.97349 0.91894 0.88212 1.21443 0.96344 1.01645 0.94155 1.19969 1.01751 0.92310 0.93188 1.20537 1.05225 0.97286 0.89366 1.69982 1.19897 1.12135 1.18532 1.25046 1.02685 0.93052 0.89712 1.42946 1.48619 1.16734 1.07877 0.74096 1.20791 1.08551 0.91689 0.92918 1.19937 1.03207 0.96196 0.87619 1.21602 1.01820 0.98166 0.79153 1.21757 0.95297 0.97568 1.00828 0.92929 0.93196 0.93814 0.94594 0.93964 0.89186 0.91985 0.89730 0.90735 0.90601 0.90375 0.90019 0.90468 0.77515 0.89905 0.89746 0.89224 0.91302 0.91682 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.12 13.70 55.49 0.76 -28.36 16 2 C -0.03 -0.74 5.50 -17.43 -0.10 -0.84 16 3 Si 1.07 26.21 25.17 -169.99 -4.28 21.93 16 4 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.29 -6.59 6.16 56.52 0.35 -6.24 16 6 H -0.29 -6.71 6.52 56.52 0.37 -6.35 16 7 C -0.30 -8.43 11.08 -15.06 -0.17 -8.59 16 8 H 0.08 2.39 8.05 -52.48 -0.42 1.97 16 9 N -0.63 -14.54 3.46 -184.88 -0.64 -15.18 16 10 C 0.11 2.10 4.81 -8.38 -0.04 2.06 16 11 C -0.10 -1.57 0.83 -155.17 -0.13 -1.69 16 12 C 0.13 2.39 7.63 -8.22 -0.06 2.33 16 13 C -0.10 -1.36 5.25 -26.77 -0.14 -1.50 16 14 C 0.10 1.13 6.06 -3.65 -0.02 1.11 16 15 N -0.60 -6.86 2.94 -172.63 -0.51 -7.37 16 16 C 0.52 6.11 6.79 -10.99 -0.07 6.04 16 17 O -0.54 -8.06 15.64 5.56 0.09 -7.97 16 18 C -0.10 -0.94 1.65 -91.51 -0.15 -1.09 16 19 H 0.10 0.83 6.33 -51.93 -0.33 0.51 16 20 C -0.10 -0.90 4.56 -26.48 -0.12 -1.02 16 21 C -0.03 -0.31 6.30 -27.62 -0.17 -0.48 16 22 C 0.01 0.06 6.98 -82.90 -0.58 -0.51 16 23 N -0.49 -5.65 11.25 -10.74 -0.12 -5.77 16 24 C 0.18 1.48 13.05 -89.93 -1.17 0.30 16 25 N -0.56 -4.19 6.14 -10.29 -0.06 -4.25 16 26 H 0.42 1.88 8.96 -40.82 -0.37 1.52 16 27 C -0.02 -0.22 7.08 -81.86 -0.58 -0.80 16 28 C -0.03 -0.27 5.49 -27.70 -0.15 -0.42 16 29 C 0.11 1.34 6.33 -3.64 -0.02 1.32 16 30 C -0.12 -1.44 5.31 -26.78 -0.14 -1.58 16 31 H 0.26 8.01 8.73 -40.82 -0.36 7.65 16 32 H 0.05 1.03 4.75 -51.93 -0.25 0.78 16 33 H 0.04 0.87 7.56 -51.93 -0.39 0.48 16 34 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 35 H 0.04 0.74 7.53 -51.93 -0.39 0.35 16 36 H 0.09 1.44 7.95 -51.93 -0.41 1.03 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.75 5.00 -51.93 -0.26 0.49 16 39 H 0.07 0.82 7.60 -51.93 -0.39 0.43 16 40 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 41 H 0.08 0.71 8.11 -51.93 -0.42 0.28 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.21 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.08 0.67 7.63 -51.93 -0.40 0.27 16 46 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 47 H 0.09 1.09 7.00 -51.93 -0.36 0.72 16 48 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -35.55 379.16 -10.73 -46.28 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.85 Total: 0.36 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -3.83 Total: -5.37 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.57 Total: -60.94 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -4.28 Total: 21.93 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.55 -10.73 -46.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035836465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.021 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds