Wall clock time and date at job start Wed Apr 1 2020 03:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00070 * 2 1 4 4 H 1.48493 * 109.47085 * 5.17128 * 3 2 1 5 5 H 1.48497 * 109.46925 * 125.17036 * 3 2 1 6 6 H 1.48504 * 109.46877 * 245.16945 * 3 2 1 7 7 C 1.38819 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99874 * 5.97790 * 7 2 1 9 9 N 1.36935 * 120.00145 * 185.98890 * 7 2 1 10 10 C 1.47166 * 135.99920 * 352.25424 * 9 7 2 11 11 C 1.52643 * 87.97097 * 206.72342 * 10 9 7 12 12 C 1.47156 * 136.00133 * 172.62946 * 9 7 2 13 13 C 1.52556 * 113.89577 * 88.17153 * 11 10 9 14 14 C 1.53358 * 109.12997 * 190.30682 * 13 11 10 15 15 N 1.46882 * 108.75039 * 307.75626 * 14 13 11 16 16 C 1.34769 * 120.46501 * 235.60599 * 15 14 13 17 17 O 1.21280 * 120.00094 * 185.03055 * 16 15 14 18 18 C 1.50701 * 120.00025 * 5.02833 * 16 15 14 19 19 H 1.08995 * 109.47117 * 322.50930 * 18 16 15 20 20 C 1.53123 * 109.47203 * 202.50578 * 18 16 15 21 21 C 1.53355 * 109.53181 * 170.00436 * 20 18 16 22 22 C 1.50859 * 108.41261 * 49.97941 * 21 20 18 23 23 N 1.33580 * 128.03170 * 163.29994 * 22 21 20 24 24 C 1.30750 * 109.14513 * 180.02562 * 23 22 21 25 25 N 1.35305 * 108.76979 * 359.97438 * 24 23 22 26 26 H 0.97002 * 126.49649 * 179.97438 * 25 24 23 27 27 C 1.35026 * 123.99123 * 343.29930 * 22 21 20 28 28 C 1.50652 * 124.45174 * 359.89723 * 27 22 21 29 29 C 1.46899 * 119.07168 * 55.62596 * 15 14 13 30 30 C 1.52550 * 114.26383 * 220.76294 * 11 10 9 31 31 H 0.97002 * 120.00200 * 174.95060 * 1 2 3 32 32 H 1.09005 * 113.48642 * 321.41570 * 10 9 7 33 33 H 1.08997 * 113.48861 * 91.92345 * 10 9 7 34 34 H 1.08996 * 113.48718 * 268.07973 * 12 9 7 35 35 H 1.09001 * 113.48976 * 38.51902 * 12 9 7 36 36 H 1.09001 * 109.53011 * 310.20589 * 13 11 10 37 37 H 1.09006 * 109.52515 * 70.41177 * 13 11 10 38 38 H 1.09000 * 109.58717 * 187.97825 * 14 13 11 39 39 H 1.08992 * 109.58993 * 67.54071 * 14 13 11 40 40 H 1.08994 * 109.46134 * 290.02063 * 20 18 16 41 41 H 1.09006 * 109.46057 * 49.98902 * 20 18 16 42 42 H 1.09001 * 109.67380 * 169.71622 * 21 20 18 43 43 H 1.09005 * 109.67755 * 290.24761 * 21 20 18 44 44 H 1.08004 * 125.61519 * 180.02562 * 24 23 22 45 45 H 1.09003 * 109.68894 * 223.82178 * 28 27 22 46 46 H 1.08995 * 109.67743 * 103.27201 * 28 27 22 47 47 H 1.08998 * 109.59179 * 184.58731 * 29 15 14 48 48 H 1.09001 * 109.71481 * 64.21597 * 29 15 14 49 49 H 1.09007 * 109.52504 * 289.75600 * 30 11 10 50 50 H 1.09002 * 109.52498 * 49.95662 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2902 2.7435 0.1262 5 1 3.1960 1.6431 1.1445 6 1 3.0068 1.7524 -1.2707 7 6 2.0103 -1.2022 -0.0005 8 1 1.4746 -2.1350 -0.0984 9 7 3.3740 -1.2055 0.1232 10 6 4.4384 -0.1892 0.1351 11 6 5.3939 -1.2622 -0.3804 12 6 4.4188 -2.2273 0.2959 13 6 5.4301 -1.3784 -1.9011 14 6 6.2117 -2.6392 -2.2903 15 7 7.5128 -2.6172 -1.6090 16 6 8.6561 -2.7132 -2.3161 17 8 9.7209 -2.7861 -1.7402 18 6 8.6113 -2.7299 -3.8223 19 1 7.7407 -3.2958 -4.1537 20 6 9.8838 -3.3877 -4.3635 21 6 9.7336 -3.6323 -5.8699 22 6 9.2686 -2.3512 -6.5167 23 7 9.3019 -2.0235 -7.8113 24 6 8.8056 -0.8234 -7.9628 25 7 8.4372 -0.3484 -6.7506 26 1 8.0399 0.5171 -6.5665 27 6 8.7305 -1.3151 -5.8383 28 6 8.5168 -1.2917 -4.3472 29 6 7.5504 -2.4897 -0.1460 30 6 6.7787 -1.2277 0.2585 31 1 -0.4850 -0.8368 -0.0739 32 1 4.2734 0.6209 -0.5753 33 1 4.6858 0.1690 1.1343 34 1 4.6608 -2.4291 1.3393 35 1 4.2369 -3.1360 -0.2780 36 1 4.4126 -1.4473 -2.2856 37 1 5.9211 -0.5009 -2.3219 38 1 6.3645 -2.6559 -3.3694 39 1 5.6538 -3.5240 -1.9843 40 1 10.7357 -2.7316 -4.1853 41 1 10.0453 -4.3385 -3.8555 42 1 10.6943 -3.9286 -6.2912 43 1 8.9986 -4.4185 -6.0426 44 1 8.7054 -0.2981 -8.9011 45 1 7.5311 -0.8835 -4.1238 46 1 9.2843 -0.6778 -3.8761 47 1 8.5849 -2.4081 0.1873 48 1 7.0869 -3.3638 0.3113 49 1 7.3172 -0.3450 -0.0864 50 1 6.6786 -1.1938 1.3434 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035836465.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:40 Heat of formation + Delta-G solvation = 54.878193 kcal Electronic energy + Delta-G solvation = -31222.873794 eV Core-core repulsion = 27251.436851 eV Total energy + Delta-G solvation = -3971.436942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.22404 -41.83344 -40.55656 -37.46190 -37.01546 -34.72066 -34.12483 -32.71494 -32.01313 -30.82797 -30.17560 -28.66434 -27.18710 -25.54956 -24.60502 -24.46277 -23.52283 -22.54283 -22.39976 -20.85131 -19.82833 -19.53230 -18.97763 -18.74113 -18.15255 -17.00291 -16.88138 -16.52023 -16.23961 -16.14253 -15.90321 -15.50221 -15.21850 -15.13612 -14.87281 -14.70937 -14.59348 -14.43210 -14.18636 -13.94487 -13.67454 -13.45100 -13.25640 -13.12638 -12.89759 -12.69740 -12.59418 -12.36612 -12.18049 -12.11208 -11.98249 -11.90129 -11.61757 -11.46008 -11.10365 -10.97841 -10.88053 -10.80138 -10.78186 -10.65339 -9.60215 -9.13592 -9.09921 -8.63092 -5.43833 1.09381 1.37279 1.47656 1.53985 1.67115 1.97853 2.16155 2.30481 2.54850 3.02709 3.23021 3.35008 3.40040 3.58850 3.72209 3.77702 3.84169 3.96660 4.10005 4.15706 4.21636 4.25080 4.27994 4.36939 4.42748 4.55596 4.56708 4.56861 4.63808 4.67117 4.71198 4.72324 4.76565 4.82778 4.88474 4.92727 5.00569 5.05821 5.09635 5.11263 5.14405 5.22538 5.28926 5.34109 5.34852 5.47910 5.65102 5.81218 5.97726 6.41713 6.58846 6.72738 7.15533 7.16192 7.36024 8.32344 8.92981 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013614 B = 0.003045 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.148729 B = 9192.089816 C =10457.529890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.088 4.088 3 Si 1.109 2.891 4 H -0.309 1.309 5 H -0.264 1.264 6 H -0.268 1.268 7 C -0.284 4.284 8 H 0.048 0.952 9 N -0.657 5.657 10 C 0.096 3.904 11 C -0.075 4.075 12 C 0.129 3.871 13 C -0.100 4.100 14 C 0.113 3.887 15 N -0.602 5.602 16 C 0.525 3.475 17 O -0.574 6.574 18 C -0.096 4.096 19 H 0.114 0.886 20 C -0.090 4.090 21 C -0.030 4.030 22 C -0.020 4.020 23 N -0.530 5.530 24 C 0.184 3.816 25 N -0.550 5.550 26 H 0.436 0.564 27 C -0.029 4.029 28 C -0.024 4.024 29 C 0.117 3.883 30 C -0.107 4.107 31 H 0.245 0.755 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.243 0.757 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.075 0.925 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.324 -2.286 -11.974 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.279 4.279 3 Si 0.936 3.064 4 H -0.238 1.238 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.411 4.411 8 H 0.066 0.934 9 N -0.386 5.386 10 C -0.029 4.029 11 C -0.076 4.076 12 C 0.004 3.996 13 C -0.138 4.138 14 C -0.009 4.009 15 N -0.334 5.334 16 C 0.314 3.686 17 O -0.454 6.454 18 C -0.117 4.117 19 H 0.132 0.868 20 C -0.128 4.128 21 C -0.068 4.068 22 C -0.149 4.149 23 N -0.250 5.250 24 C -0.099 4.099 25 N -0.154 5.154 26 H 0.276 0.724 27 C -0.146 4.146 28 C -0.063 4.063 29 C -0.006 4.006 30 C -0.145 4.145 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.751 -1.256 -12.251 25.871 hybrid contribution -1.386 -0.860 0.852 1.840 sum 21.366 -2.116 -11.398 24.308 Atomic orbital electron populations 1.71021 1.06817 1.28565 1.55798 1.27023 0.96436 1.04559 0.99863 0.83240 0.73149 0.71877 0.78131 1.23803 1.18889 1.19430 1.19976 0.81058 0.94123 1.45979 0.93411 1.46056 1.00657 1.05712 1.86132 1.22895 0.87395 0.93985 0.98577 1.21711 0.93362 0.96311 0.96264 1.22562 0.86135 0.93111 0.97775 1.21497 1.00552 0.98750 0.93028 1.21882 0.82476 0.98073 0.98507 1.48164 1.06169 1.71518 1.07578 1.20766 0.82889 0.74899 0.90068 1.90674 1.30525 1.51513 1.72687 1.21319 1.02208 0.98129 0.90090 0.86842 1.21347 0.95941 1.01332 0.94219 1.19941 1.01811 0.92203 0.92878 1.20836 1.06159 0.98289 0.89643 1.69959 1.21801 1.14044 1.19193 1.25747 1.00856 0.92324 0.90975 1.42944 1.48083 1.17060 1.07318 0.72351 1.20851 1.08547 0.91865 0.93334 1.19881 1.03718 0.95565 0.87091 1.21574 1.01627 0.97929 0.79445 1.21701 0.93208 0.98477 1.01149 0.94573 0.93616 0.93251 0.93559 0.93584 0.91786 0.90207 0.87269 0.90739 0.91876 0.90372 0.90258 0.89862 0.74120 0.88688 0.90114 0.89346 0.90741 0.90610 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.79 13.70 21.65 0.30 -62.49 16 2 C -0.09 -5.16 5.50 84.86 0.47 -4.70 16 3 Si 1.11 52.34 25.17 68.60 1.73 54.06 16 4 H -0.31 -15.20 7.11 99.48 0.71 -14.49 16 5 H -0.26 -11.26 6.16 99.48 0.61 -10.64 16 6 H -0.27 -11.30 6.52 99.48 0.65 -10.65 16 7 C -0.28 -16.07 11.08 84.04 0.93 -15.14 16 8 H 0.05 2.95 8.05 -2.91 -0.02 2.92 16 9 N -0.66 -29.85 3.46 -738.82 -2.56 -32.41 16 10 C 0.10 3.54 4.81 83.21 0.40 3.94 16 11 C -0.08 -2.07 0.83 -52.61 -0.04 -2.12 16 12 C 0.13 4.42 7.63 83.32 0.64 5.05 16 13 C -0.10 -2.39 5.25 30.57 0.16 -2.22 16 14 C 0.11 2.05 6.06 86.43 0.52 2.57 16 15 N -0.60 -11.69 2.94 -818.48 -2.41 -14.09 16 16 C 0.52 10.89 6.79 87.66 0.59 11.48 16 17 O -0.57 -15.90 15.64 -3.03 -0.05 -15.94 16 18 C -0.10 -1.53 1.65 -11.37 -0.02 -1.55 16 19 H 0.11 1.52 6.33 -2.39 -0.02 1.50 16 20 C -0.09 -1.52 4.56 30.75 0.14 -1.38 16 21 C -0.03 -0.52 6.30 30.02 0.19 -0.33 16 22 C -0.02 -0.40 6.98 41.60 0.29 -0.11 16 23 N -0.53 -11.55 11.25 -187.90 -2.11 -13.66 16 24 C 0.18 2.61 13.05 180.11 2.35 4.96 16 25 N -0.55 -6.73 6.14 -186.45 -1.15 -7.88 16 26 H 0.44 2.53 8.96 -92.71 -0.83 1.70 16 27 C -0.03 -0.47 7.08 41.14 0.29 -0.18 16 28 C -0.02 -0.35 5.49 29.96 0.16 -0.18 16 29 C 0.12 2.34 6.33 86.42 0.55 2.88 16 30 C -0.11 -2.26 5.31 30.56 0.16 -2.10 16 31 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 32 H 0.05 1.74 4.75 -2.38 -0.01 1.73 16 33 H 0.05 1.80 7.56 -2.39 -0.02 1.78 16 34 H 0.05 1.52 8.06 -2.39 -0.02 1.51 16 35 H 0.05 1.53 7.53 -2.39 -0.02 1.52 16 36 H 0.06 1.91 7.95 -2.39 -0.02 1.90 16 37 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.11 1.49 5.00 -2.39 -0.01 1.47 16 39 H 0.07 1.41 7.60 -2.39 -0.02 1.39 16 40 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 41 H 0.08 1.31 8.11 -2.38 -0.02 1.29 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.24 1.31 8.06 -2.91 -0.02 1.28 16 45 H 0.09 1.15 7.63 -2.39 -0.02 1.13 16 46 H 0.08 1.26 8.11 -2.39 -0.02 1.24 16 47 H 0.09 1.88 7.00 -2.39 -0.02 1.87 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.09 1.73 8.09 -2.39 -0.02 1.71 16 Total: -1.00 -79.47 379.16 1.48 -78.00 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -0.06 Total: 13.54 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 7.79 Total: 0.89 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -7.93 Total: -130.54 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.05 Total: -15.94 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 1.73 Total: 54.06 kcal Total: -79.47 1.48 -78.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035836465.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.874 kcal (2) G-P(sol) polarization free energy of solvation -79.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds