Wall clock time and date at job start Wed Apr 1 2020 02:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99852 * 2 1 4 4 H 1.48496 * 109.46830 * 239.99496 * 3 2 1 5 5 H 1.48493 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46968 * 119.99891 * 3 2 1 7 7 C 1.38807 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.47434 * 126.05346 * 359.97438 * 9 7 2 11 11 C 1.54508 * 107.15144 * 181.59417 * 10 9 7 12 12 C 1.56014 * 102.61792 * 22.82987 * 11 10 9 13 13 H 1.09007 * 112.89694 * 202.89960 * 12 11 10 14 14 C 1.53208 * 106.36413 * 78.29386 * 12 11 10 15 15 N 1.46539 * 110.25831 * 202.96654 * 14 12 11 16 16 C 1.34778 * 121.01680 * 235.57356 * 15 14 12 17 17 O 1.21629 * 119.99944 * 0.38729 * 16 15 14 18 18 C 1.47155 * 119.99836 * 180.39511 * 16 15 14 19 19 C 1.38406 * 126.88875 * 29.89787 * 18 16 15 20 20 C 1.39675 * 105.36055 * 180.02562 * 19 18 16 21 21 N 1.30859 * 107.86154 * 0.02562 * 20 19 18 22 22 N 1.28438 * 110.92873 * 359.70934 * 21 20 19 23 23 C 1.46506 * 125.19510 * 180.28058 * 22 21 20 24 24 C 1.53787 * 113.60969 * 44.26892 * 23 22 21 25 25 C 1.53957 * 87.01670 * 220.04970 * 24 23 22 26 26 C 1.53777 * 113.61099 * 306.66643 * 23 22 21 27 27 C 1.47136 * 117.96795 * 55.49372 * 15 14 12 28 28 C 1.53043 * 107.74068 * 302.66871 * 27 15 14 29 29 C 1.46471 * 126.05879 * 179.97438 * 9 7 2 30 30 H 1.08997 * 108.33854 * 269.14623 * 29 9 7 31 31 H 0.97002 * 120.00230 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.90280 * 300.97431 * 10 9 7 33 33 H 1.09000 * 109.90531 * 62.21917 * 10 9 7 34 34 H 1.08996 * 110.77918 * 141.10811 * 11 10 9 35 35 H 1.08998 * 110.78002 * 264.54652 * 11 10 9 36 36 H 1.09000 * 109.34823 * 323.15242 * 14 12 11 37 37 H 1.08998 * 109.34862 * 82.70472 * 14 12 11 38 38 H 1.08002 * 127.31935 * 0.03172 * 19 18 16 39 39 H 1.08001 * 126.06900 * 180.02562 * 20 19 18 40 40 H 1.08996 * 112.85448 * 175.46437 * 23 22 21 41 41 H 1.09004 * 113.61339 * 334.56998 * 24 23 22 42 42 H 1.09001 * 113.60998 * 105.47189 * 24 23 22 43 43 H 1.08997 * 113.53922 * 270.81100 * 25 24 23 44 44 H 1.08999 * 113.73911 * 139.94565 * 25 24 23 45 45 H 1.09000 * 113.61356 * 254.52489 * 26 23 22 46 46 H 1.08996 * 113.61978 * 25.34484 * 26 23 22 47 47 H 1.09005 * 109.81561 * 183.09599 * 27 15 14 48 48 H 1.08999 * 109.81739 * 62.24834 * 27 15 14 49 49 H 1.09001 * 109.15738 * 174.78851 * 28 27 15 50 50 H 1.09008 * 109.15371 * 294.00591 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1406 -2.5435 0.0005 11 6 -0.4380 -4.0592 0.0416 12 6 0.8716 -4.6470 0.6527 13 1 1.0211 -5.6978 0.4041 14 6 0.7969 -4.3909 2.1613 15 7 2.1417 -4.3925 2.7435 16 6 2.4553 -5.2141 3.7648 17 8 1.6183 -5.9745 4.2127 18 6 3.8104 -5.1909 4.3382 19 6 4.6688 -4.1069 4.3980 20 6 5.8222 -4.5825 5.0259 21 7 5.6353 -5.8475 5.3038 22 7 4.4715 -6.2340 4.9222 23 6 3.9360 -7.5879 5.0848 24 6 4.1989 -8.1915 6.4747 25 6 4.4825 -9.5223 5.7544 26 6 4.8529 -8.6850 4.5189 27 6 3.1396 -3.4711 2.1778 28 6 3.2667 -3.7810 0.6844 29 6 1.9200 -3.7267 0.0005 30 1 2.0450 -4.0464 -1.0340 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.0582 0.8793 33 1 -0.5600 -2.1077 -0.9062 34 1 -1.2927 -4.2682 0.6850 35 1 -0.6045 -4.4479 -0.9630 36 1 0.3281 -3.4233 2.3406 37 1 0.1990 -5.1719 2.6311 38 1 4.4856 -3.1059 4.0362 39 1 6.7106 -4.0081 5.2434 40 1 2.8992 -7.6749 4.7601 41 1 5.0713 -7.7713 6.9752 42 1 3.3157 -8.2189 7.1129 43 1 3.5948 -10.1390 5.6139 44 1 5.3217 -10.0777 6.1731 45 1 4.4971 -9.1104 3.5805 46 1 5.9042 -8.3997 4.4824 47 1 4.1010 -3.6205 2.6693 48 1 2.8108 -2.4409 2.3147 49 1 3.9317 -3.0509 0.2230 50 1 3.6897 -4.7780 0.5608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036719112.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:17 Heat of formation + Delta-G solvation = 112.467954 kcal Electronic energy + Delta-G solvation = -31812.502413 eV Core-core repulsion = 27843.562750 eV Total energy + Delta-G solvation = -3968.939663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.66007 -39.98162 -38.68377 -38.14829 -35.17333 -32.92684 -31.85415 -31.67308 -31.05042 -29.23067 -27.53820 -26.02826 -25.95468 -25.32209 -24.21105 -22.83412 -22.15369 -21.78212 -20.27865 -20.00045 -19.12253 -18.55211 -17.28603 -16.63099 -16.33990 -15.90531 -15.79308 -15.64038 -15.17128 -14.73102 -14.55616 -14.17208 -14.06927 -13.89199 -13.55536 -13.14137 -12.88269 -12.83950 -12.79607 -12.52340 -12.30008 -12.16416 -11.58665 -11.52311 -11.43893 -11.15116 -11.13865 -10.95639 -10.89859 -10.79611 -10.72540 -10.51809 -10.20170 -10.05079 -9.95722 -9.76117 -9.68579 -9.63309 -9.15839 -8.86864 -8.63333 -8.26626 -6.85499 -5.74956 -3.07930 1.35468 2.29661 2.60412 3.15987 3.28880 3.36934 3.41862 3.43592 4.07163 4.21279 4.45340 4.46462 4.47789 4.53429 4.76956 5.09734 5.15532 5.20850 5.29753 5.33491 5.37924 5.42957 5.48467 5.50853 5.53815 5.56615 5.59957 5.61373 5.67679 5.73262 5.79269 5.86406 6.00812 6.04454 6.08314 6.24958 6.27584 6.31786 6.38851 6.49283 6.52475 6.64812 6.73341 6.74868 6.85574 6.88612 7.52658 7.57751 7.61558 7.78016 8.05201 8.21197 8.23652 9.17216 9.79497 10.47048 11.37053 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003278 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.136437 B = 8540.819317 C = 9578.999983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.128 3.872 15 N -0.578 5.578 16 C 0.586 3.414 17 O -0.556 6.556 18 C -0.025 4.025 19 C -0.198 4.198 20 C -0.004 4.004 21 N -0.282 5.282 22 N -0.249 5.249 23 C 0.114 3.886 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.142 4.142 27 C 0.085 3.915 28 C -0.127 4.127 29 C 0.170 3.830 30 H 0.017 0.983 31 H 0.252 0.748 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.171 0.829 39 H 0.185 0.815 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.077 0.923 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -14.749 8.529 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.052 3.948 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.095 0.905 14 C 0.006 3.994 15 N -0.308 5.308 16 C 0.373 3.627 17 O -0.436 6.436 18 C -0.154 4.154 19 C -0.227 4.227 20 C -0.180 4.180 21 N -0.113 5.113 22 N -0.036 5.036 23 C 0.014 3.986 24 C -0.176 4.176 25 C -0.174 4.174 26 C -0.181 4.181 27 C -0.037 4.037 28 C -0.166 4.166 29 C 0.062 3.938 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.188 0.812 39 H 0.202 0.798 40 H 0.162 0.838 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.261 -15.946 9.239 20.196 hybrid contribution 0.041 1.874 -0.576 1.961 sum 8.303 -14.071 8.663 18.493 Atomic orbital electron populations 1.69937 1.04872 1.25145 1.56759 1.24768 0.95624 0.97531 1.02304 0.86274 0.78515 0.83535 0.77886 1.21253 1.21728 1.21130 1.18904 0.90347 0.82154 1.44009 0.90365 1.44308 1.01453 0.99340 1.86799 1.21248 0.84343 0.88213 1.01010 1.23148 0.95805 0.99654 0.99525 1.22754 0.98041 0.98499 0.94389 0.90484 1.21627 0.81908 1.03227 0.92620 1.47797 1.13715 1.37668 1.31606 1.16937 0.85045 0.80697 0.80071 1.90731 1.50060 1.40998 1.61785 1.21483 0.96622 0.90360 1.06907 1.22535 0.94033 0.99834 1.06281 1.23571 1.00324 0.91040 1.03093 1.73028 1.01877 1.15877 1.20566 1.45718 1.09141 1.09414 1.39313 1.23662 1.00090 0.75260 0.99625 1.23344 1.03282 0.95757 0.95235 1.22718 1.02356 0.96015 0.96324 1.23372 1.00741 0.95122 0.98832 1.22581 0.92367 0.94448 0.94280 1.21573 0.99102 1.00733 0.95176 1.20250 0.90799 0.87083 0.95642 0.96563 0.93718 0.93471 0.93955 0.91962 0.92287 0.89902 0.90097 0.81161 0.79766 0.83805 0.88438 0.90326 0.89442 0.90213 0.90414 0.88618 0.88302 0.88856 0.90460 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.77 10.38 55.49 0.58 -25.19 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.91 21.06 29.55 -169.99 -5.02 16.03 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.23 -5.70 9.02 -15.06 -0.14 -5.84 16 8 H 0.08 1.88 6.69 -52.48 -0.35 1.53 16 9 N -0.59 -13.68 3.12 -164.49 -0.51 -14.19 16 10 C 0.18 4.01 4.64 -2.74 -0.01 4.00 16 11 C -0.14 -2.53 6.29 -24.33 -0.15 -2.69 16 12 C -0.12 -1.99 3.86 -88.38 -0.34 -2.33 16 13 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 14 C 0.13 2.22 5.45 -3.91 -0.02 2.20 16 15 N -0.58 -9.63 2.94 -174.36 -0.51 -10.14 16 16 C 0.59 9.83 7.53 -12.64 -0.10 9.73 16 17 O -0.56 -10.29 14.50 5.25 0.08 -10.21 16 18 C -0.03 -0.38 6.51 -82.06 -0.53 -0.91 16 19 C -0.20 -2.60 8.69 -38.98 -0.34 -2.94 16 20 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 21 N -0.28 -3.75 11.14 30.59 0.34 -3.41 16 22 N -0.25 -3.44 3.46 -49.90 -0.17 -3.61 16 23 C 0.11 1.35 4.44 -67.11 -0.30 1.05 16 24 C -0.14 -1.32 7.77 -25.82 -0.20 -1.52 16 25 C -0.14 -1.03 8.09 -25.83 -0.21 -1.24 16 26 C -0.14 -1.34 7.80 -25.92 -0.20 -1.55 16 27 C 0.08 1.35 5.53 -3.67 -0.02 1.33 16 28 C -0.13 -2.11 5.19 -27.64 -0.14 -2.25 16 29 C 0.17 3.25 2.85 -68.36 -0.19 3.05 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 1.19 6.99 -51.93 -0.36 0.83 16 33 H 0.04 1.08 7.57 -51.93 -0.39 0.69 16 34 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.62 6.80 -51.93 -0.35 1.27 16 37 H 0.08 1.38 6.99 -51.93 -0.36 1.02 16 38 H 0.17 2.02 6.20 -52.49 -0.33 1.70 16 39 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.14 1.88 6.11 -51.93 -0.32 1.56 16 41 H 0.10 0.99 7.78 -51.93 -0.40 0.59 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.96 8.00 -51.93 -0.42 0.55 16 47 H 0.10 1.37 3.47 -51.93 -0.18 1.19 16 48 H 0.09 1.72 7.48 -51.93 -0.39 1.33 16 49 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 50 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -29.90 378.14 -10.31 -40.21 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.57 Total: 5.22 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.21 Total: -0.40 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -0.28 Total: -56.55 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.90 -10.31 -40.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036719112.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.677 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds