Wall clock time and date at job start Wed Apr 1 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99852 * 2 1 4 4 H 1.48496 * 109.46830 * 239.99496 * 3 2 1 5 5 H 1.48493 * 109.47049 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46968 * 119.99891 * 3 2 1 7 7 C 1.38807 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00339 * 0.02562 * 7 2 1 10 10 C 1.47434 * 126.05346 * 359.97438 * 9 7 2 11 11 C 1.54508 * 107.15144 * 181.59417 * 10 9 7 12 12 C 1.56014 * 102.61792 * 22.82987 * 11 10 9 13 13 H 1.09007 * 112.89694 * 202.89960 * 12 11 10 14 14 C 1.53208 * 106.36413 * 78.29386 * 12 11 10 15 15 N 1.46539 * 110.25831 * 202.96654 * 14 12 11 16 16 C 1.34778 * 121.01680 * 235.57356 * 15 14 12 17 17 O 1.21629 * 119.99944 * 0.38729 * 16 15 14 18 18 C 1.47155 * 119.99836 * 180.39511 * 16 15 14 19 19 C 1.38406 * 126.88875 * 29.89787 * 18 16 15 20 20 C 1.39675 * 105.36055 * 180.02562 * 19 18 16 21 21 N 1.30859 * 107.86154 * 0.02562 * 20 19 18 22 22 N 1.28438 * 110.92873 * 359.70934 * 21 20 19 23 23 C 1.46506 * 125.19510 * 180.28058 * 22 21 20 24 24 C 1.53787 * 113.60969 * 44.26892 * 23 22 21 25 25 C 1.53957 * 87.01670 * 220.04970 * 24 23 22 26 26 C 1.53777 * 113.61099 * 306.66643 * 23 22 21 27 27 C 1.47136 * 117.96795 * 55.49372 * 15 14 12 28 28 C 1.53043 * 107.74068 * 302.66871 * 27 15 14 29 29 C 1.46471 * 126.05879 * 179.97438 * 9 7 2 30 30 H 1.08997 * 108.33854 * 269.14623 * 29 9 7 31 31 H 0.97002 * 120.00230 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.90280 * 300.97431 * 10 9 7 33 33 H 1.09000 * 109.90531 * 62.21917 * 10 9 7 34 34 H 1.08996 * 110.77918 * 141.10811 * 11 10 9 35 35 H 1.08998 * 110.78002 * 264.54652 * 11 10 9 36 36 H 1.09000 * 109.34823 * 323.15242 * 14 12 11 37 37 H 1.08998 * 109.34862 * 82.70472 * 14 12 11 38 38 H 1.08002 * 127.31935 * 0.03172 * 19 18 16 39 39 H 1.08001 * 126.06900 * 180.02562 * 20 19 18 40 40 H 1.08996 * 112.85448 * 175.46437 * 23 22 21 41 41 H 1.09004 * 113.61339 * 334.56998 * 24 23 22 42 42 H 1.09001 * 113.60998 * 105.47189 * 24 23 22 43 43 H 1.08997 * 113.53922 * 270.81100 * 25 24 23 44 44 H 1.08999 * 113.73911 * 139.94565 * 25 24 23 45 45 H 1.09000 * 113.61356 * 254.52489 * 26 23 22 46 46 H 1.08996 * 113.61978 * 25.34484 * 26 23 22 47 47 H 1.09005 * 109.81561 * 183.09599 * 27 15 14 48 48 H 1.08999 * 109.81739 * 62.24834 * 27 15 14 49 49 H 1.09001 * 109.15738 * 174.78851 * 28 27 15 50 50 H 1.09008 * 109.15371 * 294.00591 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1406 -2.5435 0.0005 11 6 -0.4380 -4.0592 0.0416 12 6 0.8716 -4.6470 0.6527 13 1 1.0211 -5.6978 0.4041 14 6 0.7969 -4.3909 2.1613 15 7 2.1417 -4.3925 2.7435 16 6 2.4553 -5.2141 3.7648 17 8 1.6183 -5.9745 4.2127 18 6 3.8104 -5.1909 4.3382 19 6 4.6688 -4.1069 4.3980 20 6 5.8222 -4.5825 5.0259 21 7 5.6353 -5.8475 5.3038 22 7 4.4715 -6.2340 4.9222 23 6 3.9360 -7.5879 5.0848 24 6 4.1989 -8.1915 6.4747 25 6 4.4825 -9.5223 5.7544 26 6 4.8529 -8.6850 4.5189 27 6 3.1396 -3.4711 2.1778 28 6 3.2667 -3.7810 0.6844 29 6 1.9200 -3.7267 0.0005 30 1 2.0450 -4.0464 -1.0340 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.0582 0.8793 33 1 -0.5600 -2.1077 -0.9062 34 1 -1.2927 -4.2682 0.6850 35 1 -0.6045 -4.4479 -0.9630 36 1 0.3281 -3.4233 2.3406 37 1 0.1990 -5.1719 2.6311 38 1 4.4856 -3.1059 4.0362 39 1 6.7106 -4.0081 5.2434 40 1 2.8992 -7.6749 4.7601 41 1 5.0713 -7.7713 6.9752 42 1 3.3157 -8.2189 7.1129 43 1 3.5948 -10.1390 5.6139 44 1 5.3217 -10.0777 6.1731 45 1 4.4971 -9.1104 3.5805 46 1 5.9042 -8.3997 4.4824 47 1 4.1010 -3.6205 2.6693 48 1 2.8108 -2.4409 2.3147 49 1 3.9317 -3.0509 0.2230 50 1 3.6897 -4.7780 0.5608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036719112.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:16 Heat of formation + Delta-G solvation = 96.317941 kcal Electronic energy + Delta-G solvation = -31813.202730 eV Core-core repulsion = 27843.562750 eV Total energy + Delta-G solvation = -3969.639980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.67052 -41.38067 -39.61875 -39.45661 -36.64527 -34.67732 -33.22677 -32.80270 -32.25006 -30.91466 -29.07635 -27.24690 -26.75949 -26.43965 -25.85550 -24.20810 -23.40625 -22.78761 -21.81018 -21.22987 -20.23912 -19.78257 -18.66969 -18.08651 -17.78070 -17.10951 -16.89563 -16.70942 -16.54917 -16.18972 -15.91577 -15.65244 -15.40046 -15.18553 -14.72360 -14.52777 -14.11280 -13.95561 -13.88195 -13.72192 -13.59022 -13.29267 -13.19123 -13.06692 -12.78800 -12.66988 -12.50763 -12.28692 -12.20530 -12.01634 -11.83861 -11.72456 -11.63343 -11.54302 -11.52455 -11.31916 -11.19230 -11.06057 -10.60610 -10.20562 -9.90263 -9.65192 -8.78117 -7.76219 -5.09246 0.23075 1.26394 1.51069 1.52651 1.58249 1.62739 1.97345 2.04749 2.55497 3.27065 3.29739 3.43261 3.45551 3.59744 3.68930 3.75946 3.82130 3.90756 3.94653 4.04927 4.14195 4.23145 4.26392 4.40768 4.48025 4.55744 4.58146 4.61260 4.68706 4.71577 4.76449 4.79214 4.81776 4.87389 4.90546 4.94886 4.95939 4.99280 5.10705 5.21540 5.24676 5.32034 5.38214 5.46946 5.57598 5.60441 5.70789 5.78075 5.83084 6.26791 6.29961 6.88975 7.09324 7.17640 7.87306 8.54152 9.35153 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.003278 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.136437 B = 8540.819317 C = 9578.999983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.218 4.218 8 H 0.091 0.909 9 N -0.607 5.607 10 C 0.185 3.815 11 C -0.129 4.129 12 C -0.102 4.102 13 H 0.105 0.895 14 C 0.134 3.866 15 N -0.580 5.580 16 C 0.588 3.412 17 O -0.577 6.577 18 C -0.052 4.052 19 C -0.196 4.196 20 C 0.000 4.000 21 N -0.287 5.287 22 N -0.250 5.250 23 C 0.095 3.905 24 C -0.135 4.135 25 C -0.120 4.120 26 C -0.136 4.136 27 C 0.093 3.907 28 C -0.122 4.122 29 C 0.162 3.838 30 H 0.015 0.985 31 H 0.242 0.758 32 H 0.012 0.988 33 H 0.004 0.996 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.181 0.819 39 H 0.220 0.780 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.066 0.934 49 H 0.075 0.925 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.860 -16.700 9.184 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.232 1.232 6 H -0.199 1.199 7 C -0.347 4.347 8 H 0.109 0.891 9 N -0.332 5.332 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.122 4.122 13 H 0.123 0.877 14 C 0.012 3.988 15 N -0.309 5.309 16 C 0.376 3.624 17 O -0.459 6.459 18 C -0.181 4.181 19 C -0.225 4.225 20 C -0.176 4.176 21 N -0.119 5.119 22 N -0.038 5.038 23 C -0.005 4.005 24 C -0.174 4.174 25 C -0.158 4.158 26 C -0.175 4.175 27 C -0.028 4.028 28 C -0.161 4.161 29 C 0.056 3.944 30 H 0.032 0.968 31 H 0.051 0.949 32 H 0.031 0.969 33 H 0.022 0.978 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.198 0.802 39 H 0.236 0.764 40 H 0.145 0.855 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.143 0.857 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.833 -17.934 9.895 23.171 hybrid contribution -0.720 2.438 -0.752 2.651 sum 10.113 -15.497 9.143 20.640 Atomic orbital electron populations 1.70167 1.06295 1.24828 1.59091 1.25516 0.96326 1.00627 1.03564 0.85314 0.77138 0.79623 0.78292 1.20639 1.23206 1.19904 1.19311 0.91085 0.82947 1.41353 0.89126 1.44529 1.01811 1.00526 1.86369 1.20969 0.84263 0.91269 0.97499 1.23022 0.97023 0.95756 1.01002 1.22718 0.96481 0.99380 0.93665 0.87711 1.21442 0.82535 1.01748 0.93063 1.47780 1.13414 1.37918 1.31810 1.17159 0.85675 0.80052 0.79549 1.90714 1.50983 1.41872 1.62311 1.21390 0.96261 0.91784 1.08656 1.22726 0.94021 0.99756 1.05956 1.24153 1.00927 0.90631 1.01841 1.73047 1.01676 1.16634 1.20576 1.45950 1.09122 1.09765 1.38925 1.23904 0.99853 0.75142 1.01583 1.23337 1.03064 0.96712 0.94244 1.22709 1.03440 0.95127 0.94534 1.23344 0.99812 0.94419 0.99876 1.22523 0.93216 0.92806 0.94251 1.21520 0.97459 1.02021 0.95050 1.20469 0.92556 0.85336 0.96076 0.96754 0.94908 0.96947 0.97813 0.90244 0.90765 0.92789 0.89645 0.80194 0.76392 0.85473 0.88982 0.90216 0.88205 0.88524 0.89888 0.89110 0.85741 0.91592 0.90655 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.92 10.38 21.65 0.22 -55.69 16 2 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 3 Si 0.97 44.01 29.55 68.60 2.03 46.04 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.22 -11.09 9.02 84.03 0.76 -10.33 16 8 H 0.09 4.29 6.69 -2.91 -0.02 4.27 16 9 N -0.61 -28.34 3.12 -674.33 -2.11 -30.45 16 10 C 0.19 8.73 4.64 86.71 0.40 9.13 16 11 C -0.13 -4.53 6.29 32.15 0.20 -4.32 16 12 C -0.10 -3.34 3.86 -9.34 -0.04 -3.37 16 13 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 14 C 0.13 4.62 5.45 86.44 0.47 5.09 16 15 N -0.58 -18.80 2.94 -823.79 -2.42 -21.22 16 16 C 0.59 19.20 7.53 86.58 0.65 19.86 16 17 O -0.58 -21.16 14.50 -4.12 -0.06 -21.22 16 18 C -0.05 -1.50 6.51 40.78 0.27 -1.23 16 19 C -0.20 -4.70 8.69 22.66 0.20 -4.50 16 20 C 0.00 0.00 12.03 85.18 1.02 1.02 16 21 N -0.29 -7.01 11.14 -57.14 -0.64 -7.64 16 22 N -0.25 -6.53 3.46 -311.80 -1.08 -7.61 16 23 C 0.10 2.13 4.44 45.52 0.20 2.33 16 24 C -0.14 -2.38 7.77 31.18 0.24 -2.14 16 25 C -0.12 -1.52 8.09 31.18 0.25 -1.27 16 26 C -0.14 -2.30 7.80 31.12 0.24 -2.05 16 27 C 0.09 2.86 5.53 86.27 0.48 3.34 16 28 C -0.12 -3.80 5.19 30.00 0.16 -3.65 16 29 C 0.16 6.00 2.85 44.73 0.13 6.13 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.01 0.66 6.99 -2.39 -0.02 0.64 16 33 H 0.00 0.20 7.57 -2.39 -0.02 0.18 16 34 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.05 2.17 6.80 -2.39 -0.02 2.16 16 37 H 0.09 2.86 6.99 -2.39 -0.02 2.84 16 38 H 0.18 3.86 6.20 -2.91 -0.02 3.85 16 39 H 0.22 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.13 3.27 6.11 -2.39 -0.01 3.25 16 41 H 0.09 1.72 7.78 -2.38 -0.02 1.71 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.63 8.00 -2.39 -0.02 1.61 16 47 H 0.13 3.17 3.47 -2.38 -0.01 3.17 16 48 H 0.07 2.41 7.48 -2.39 -0.02 2.39 16 49 H 0.07 2.40 7.01 -2.39 -0.02 2.39 16 50 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -66.95 378.14 3.00 -63.94 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.95 Total: 23.03 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 6.10 Total: 10.82 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -6.02 Total: -122.61 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.95 3.00 -63.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036719112.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.259 kcal (2) G-P(sol) polarization free energy of solvation -66.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds