Wall clock time and date at job start Wed Apr 1 2020 03:34:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.38540 * 120.01796 * 2 1
4 4 C 1.40072 * 117.82121 * 180.25758 * 3 2 1
5 5 C 1.48134 * 121.15204 * 179.73978 * 4 3 2
6 6 O 1.21518 * 119.99565 * 324.11262 * 5 4 3
7 7 N 1.34775 * 120.00417 * 144.10634 * 5 4 3
8 8 C 1.46925 * 120.63231 * 174.14313 * 7 5 4
9 9 C 1.53192 * 108.88846 * 126.46290 * 8 7 5
10 10 C 1.53041 * 109.31306 * 54.56842 * 9 8 7
11 11 C 1.53005 * 109.45738 * 178.61032 * 10 9 8
12 12 H 1.09005 * 110.63831 * 59.29765 * 11 10 9
13 13 C 1.55154 * 110.71727 * 182.43714 * 11 10 9
14 14 C 1.55120 * 101.48565 * 153.73598 * 13 11 10
15 15 N 1.47424 * 104.94214 * 323.22578 * 14 13 11
16 16 C 1.36943 * 125.64921 * 203.97335 * 15 14 13
17 17 H 1.07997 * 120.00359 * 166.34350 * 16 15 14
18 18 C 1.38818 * 119.99458 * 346.33566 * 16 15 14
19 19 N 1.31616 * 120.00158 * 350.47851 * 18 16 15
20 20 Si 1.86802 * 119.99607 * 170.48106 * 18 16 15
21 21 H 1.48504 * 109.47112 * 94.96098 * 20 18 16
22 22 H 1.48496 * 109.47308 * 214.96504 * 20 18 16
23 23 H 1.48501 * 109.47122 * 334.96439 * 20 18 16
24 24 C 1.47020 * 108.70488 * 24.00091 * 15 14 13
25 25 C 1.53040 * 109.53348 * 298.62745 * 10 9 8
26 26 C 1.46965 * 120.64886 * 353.96486 * 7 5 4
27 27 C 1.39771 * 117.70226 * 359.47177 * 4 3 2
28 28 N 1.31888 * 119.65590 * 0.27209 * 27 4 3
29 29 N 1.28279 * 122.33288 * 0.02562 * 28 27 4
30 30 H 1.08995 * 109.47172 * 270.27925 * 1 2 3
31 31 H 1.08999 * 109.46653 * 30.28324 * 1 2 3
32 32 H 1.08997 * 109.46817 * 150.28270 * 1 2 3
33 33 H 1.08003 * 121.09174 * 0.02562 * 3 2 1
34 34 H 1.09000 * 109.58297 * 6.60545 * 8 7 5
35 35 H 1.08995 * 109.58670 * 246.32423 * 8 7 5
36 36 H 1.09002 * 109.49388 * 174.51634 * 9 8 7
37 37 H 1.09002 * 109.50211 * 294.60811 * 9 8 7
38 38 H 1.08997 * 109.46506 * 58.65291 * 10 9 8
39 39 H 1.08998 * 111.00569 * 271.93805 * 13 11 10
40 40 H 1.08999 * 111.00487 * 35.79407 * 13 11 10
41 41 H 1.08998 * 110.42151 * 204.29427 * 14 13 11
42 42 H 1.09006 * 110.30258 * 82.09058 * 14 13 11
43 43 H 0.96997 * 119.99432 * 180.02562 * 19 18 16
44 44 H 1.09004 * 109.88046 * 239.52931 * 24 15 14
45 45 H 1.08994 * 110.01126 * 118.43530 * 24 15 14
46 46 H 1.09000 * 109.49511 * 181.31696 * 25 10 9
47 47 H 1.08994 * 109.50034 * 301.41540 * 25 10 9
48 48 H 1.08999 * 109.46878 * 113.75561 * 26 7 5
49 49 H 1.08994 * 109.71500 * 353.45928 * 26 7 5
50 50 H 1.08004 * 120.17111 * 180.24639 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.2001 1.1996 0.0000
4 6 3.5998 1.1459 -0.0056
5 6 4.4141 2.3833 -0.0117
6 8 4.0333 3.3581 -0.6293
7 7 5.5772 2.4281 0.6677
8 6 6.4576 3.6001 0.5683
9 6 6.7652 4.1105 1.9796
10 6 7.3362 2.9650 2.8188
11 6 7.6770 3.4796 4.2188
12 1 6.7888 3.8802 4.7077
13 6 8.3157 2.3554 5.0764
14 6 9.1657 3.1777 6.0801
15 7 9.6847 4.3140 5.2972
16 6 10.8119 5.0351 5.5881
17 1 11.2341 5.6991 4.8484
18 6 11.4118 4.9126 6.8340
19 7 10.8013 4.2547 7.7966
20 14 13.0857 5.6817 7.1442
21 1 12.9083 7.0241 7.7541
22 1 13.8642 4.8175 8.0673
23 1 13.8152 5.8152 5.8576
24 6 8.7912 4.5452 4.1527
25 6 6.3004 1.8435 2.9259
26 6 5.9875 1.3074 1.5253
27 6 4.2017 -0.1156 0.0007
28 7 3.4483 -1.1981 0.0060
29 7 2.1667 -1.1420 0.0051
30 1 -0.3633 0.0050 1.0276
31 1 -0.3632 0.8874 -0.5182
32 1 -0.3633 -0.8925 -0.5094
33 1 1.6783 2.1452 0.0004
34 1 5.9599 4.3836 -0.0032
35 1 7.3858 3.3188 0.0711
36 1 7.4944 4.9187 1.9233
37 1 5.8489 4.4782 2.4414
38 1 8.2390 2.5815 2.3434
39 1 7.5507 1.7748 5.5919
40 1 8.9487 1.7107 4.4667
41 1 9.9883 2.5750 6.4651
42 1 8.5423 3.5351 6.8998
43 1 11.2204 4.1695 8.6672
44 1 9.3479 4.4421 3.2212
45 1 8.3551 5.5421 4.2155
46 1 6.6988 1.0382 3.5430
47 1 5.3885 2.2325 3.3787
48 1 6.8773 0.8367 1.1071
49 1 5.1814 0.5763 1.5857
50 1 5.2782 -0.2034 0.0007
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001039120454.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:34:31
Heat of formation + Delta-G solvation = 25.377919 kcal
Electronic energy + Delta-G solvation = -30114.466272 eV
Core-core repulsion = 26141.750102 eV
Total energy + Delta-G solvation = -3972.716170 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.54189 -41.11519 -39.77554 -38.04273 -35.53058 -34.99286 -34.54999 -33.36994
-32.12587 -30.92243 -29.45764 -29.28916 -27.13614 -26.46350 -25.43492 -24.36967
-24.12664 -22.17767 -21.87417 -20.84489 -20.40643 -19.30665 -18.80620 -18.05483
-17.70599 -17.29405 -16.81417 -16.56479 -16.33334 -15.97728 -15.74269 -15.51499
-15.07215 -14.87959 -14.63370 -14.50918 -14.32362 -14.29220 -14.11322 -13.82290
-13.47388 -13.42753 -13.30497 -13.18095 -12.79234 -12.72502 -12.51312 -12.29923
-12.21218 -12.03987 -12.00904 -11.82132 -11.74123 -11.60345 -11.38228 -11.32832
-11.17012 -11.06494 -10.78900 -10.67350 -10.60396 -9.79946 -8.81424 -7.89423
-5.24500 -0.76481 -0.26875 1.40585 1.44776 1.45861 1.55837 1.70434
2.37950 2.49098 2.88627 3.02069 3.27914 3.29860 3.41028 3.66349
3.67332 3.72376 3.76515 3.86061 4.02863 4.11949 4.16650 4.24370
4.29854 4.41585 4.42328 4.46612 4.57644 4.61114 4.72117 4.74621
4.75876 4.83016 4.85001 4.87916 4.95158 4.97840 4.98650 5.04938
5.15509 5.16796 5.25458 5.26049 5.41230 5.46210 5.47686 5.58637
5.63895 5.77307 6.13923 6.22224 6.80704 7.09057 7.51757 7.78319
8.45683 9.23076
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.025958 B = 0.002043 C = 0.001969
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1078.419644 B =13704.406773 C =14219.693164
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.102 4.102
2 C 0.072 3.928
3 C -0.063 4.063
4 C -0.131 4.131
5 C 0.565 3.435
6 O -0.563 6.563
7 N -0.593 5.593
8 C 0.116 3.884
9 C -0.124 4.124
10 C -0.064 4.064
11 C -0.077 4.077
12 H 0.066 0.934
13 C -0.120 4.120
14 C 0.175 3.825
15 N -0.627 5.627
16 C -0.244 4.244
17 H 0.077 0.923
18 C -0.066 4.066
19 N -0.948 5.948
20 Si 0.976 3.024
21 H -0.287 1.287
22 H -0.292 1.292
23 H -0.267 1.267
24 C 0.137 3.863
25 C -0.124 4.124
26 C 0.093 3.907
27 C 0.063 3.937
28 N -0.261 5.261
29 N -0.259 5.259
30 H 0.100 0.900
31 H 0.102 0.898
32 H 0.087 0.913
33 H 0.174 0.826
34 H 0.083 0.917
35 H 0.091 0.909
36 H 0.078 0.922
37 H 0.058 0.942
38 H 0.081 0.919
39 H 0.083 0.917
40 H 0.073 0.927
41 H 0.023 0.977
42 H -0.008 1.008
43 H 0.248 0.752
44 H 0.033 0.967
45 H 0.008 0.992
46 H 0.094 0.906
47 H 0.061 0.939
48 H 0.105 0.895
49 H 0.097 0.903
50 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.707 -9.511 -17.636 27.413
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.074 4.074
3 C -0.093 4.093
4 C -0.145 4.145
5 C 0.352 3.648
6 O -0.443 6.443
7 N -0.324 5.324
8 C -0.006 4.006
9 C -0.163 4.163
10 C -0.083 4.083
11 C -0.096 4.096
12 H 0.085 0.915
13 C -0.159 4.159
14 C 0.050 3.950
15 N -0.353 5.353
16 C -0.374 4.374
17 H 0.094 0.906
18 C -0.259 4.259
19 N -0.597 5.597
20 Si 0.804 3.196
21 H -0.214 1.214
22 H -0.219 1.219
23 H -0.192 1.192
24 C 0.012 3.988
25 C -0.162 4.162
26 C -0.029 4.029
27 C -0.102 4.102
28 N -0.100 5.100
29 N -0.102 5.102
30 H 0.119 0.881
31 H 0.121 0.879
32 H 0.106 0.894
33 H 0.191 0.809
34 H 0.102 0.898
35 H 0.110 0.890
36 H 0.096 0.904
37 H 0.077 0.923
38 H 0.100 0.900
39 H 0.102 0.898
40 H 0.091 0.909
41 H 0.041 0.959
42 H 0.010 0.990
43 H 0.057 0.943
44 H 0.051 0.949
45 H 0.026 0.974
46 H 0.112 0.888
47 H 0.080 0.920
48 H 0.123 0.877
49 H 0.115 0.885
50 H 0.220 0.780
Dipole moment (debyes) X Y Z Total
from point charges -18.800 -10.638 -17.806 27.994
hybrid contribution 1.256 2.363 0.920 2.829
sum -17.544 -8.275 -16.886 25.718
Atomic orbital electron populations
1.20882 0.84359 1.05559 1.05178 1.23427 1.00977 0.89001 0.93950
1.22713 0.92782 1.01439 0.92325 1.21181 0.95687 0.95086 1.02561
1.18113 0.80851 0.86460 0.79346 1.90793 1.70980 1.36949 1.45529
1.48112 1.19378 1.20155 1.44742 1.21720 0.93962 0.87467 0.97446
1.21922 1.01297 0.98422 0.94624 1.21054 0.98769 0.95261 0.93231
1.22048 0.96319 0.95017 0.96214 0.91545 1.22906 0.98672 0.96770
0.97507 1.21204 0.94256 0.87688 0.91831 1.44834 1.26773 1.35186
1.28511 1.19392 1.01014 1.19940 0.97010 0.90564 1.25720 1.03022
1.01892 0.95303 1.70163 1.38912 1.47852 1.02743 0.85105 0.79454
0.77279 0.77746 1.21445 1.21883 1.19188 1.21516 0.90894 0.96145
0.90225 1.21942 0.99027 0.98893 0.96378 1.22450 1.02380 0.87921
0.90140 1.25044 1.03812 0.87818 0.93510 1.73042 0.99606 1.27576
1.09817 1.72782 1.02180 1.26303 1.08937 0.88124 0.87889 0.89380
0.80862 0.89820 0.89042 0.90390 0.92310 0.90025 0.89847 0.90868
0.95881 0.99030 0.94333 0.94881 0.97384 0.88800 0.92011 0.87734
0.88494 0.77956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.70 10.19 71.24 0.73 0.02 16
2 C 0.07 1.04 6.86 42.62 0.29 1.33 16
3 C -0.06 -0.91 9.51 22.79 0.22 -0.70 16
4 C -0.13 -2.17 5.30 -19.83 -0.11 -2.28 16
5 C 0.57 11.13 7.43 86.87 0.65 11.78 16
6 O -0.56 -14.95 16.34 -3.77 -0.06 -15.01 16
7 N -0.59 -9.69 2.98 -821.90 -2.45 -12.14 16
8 C 0.12 1.99 6.44 86.36 0.56 2.55 16
9 C -0.12 -2.45 5.20 30.67 0.16 -2.29 16
10 C -0.06 -1.32 1.53 -10.76 -0.02 -1.33 16
11 C -0.08 -2.29 2.48 -9.61 -0.02 -2.32 16
12 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16
13 C -0.12 -3.96 5.50 32.06 0.18 -3.78 16
14 C 0.18 8.50 5.38 86.93 0.47 8.97 16
15 N -0.63 -32.17 3.39 -691.57 -2.35 -34.52 16
16 C -0.24 -13.82 10.22 84.03 0.86 -12.96 16
17 H 0.08 4.15 7.85 -2.91 -0.02 4.12 16
18 C -0.07 -3.79 5.39 84.86 0.46 -3.33 16
19 N -0.95 -57.64 10.83 21.65 0.23 -57.40 16
20 Si 0.98 45.87 29.56 68.60 2.03 47.90 16
21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16
22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16
23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
24 C 0.14 5.39 5.89 86.73 0.51 5.90 16
25 C -0.12 -1.95 5.19 30.67 0.16 -1.79 16
26 C 0.09 1.12 4.83 86.36 0.42 1.54 16
27 C 0.06 0.97 8.71 85.06 0.74 1.71 16
28 N -0.26 -5.21 11.49 -56.52 -0.65 -5.86 16
29 N -0.26 -5.15 11.40 -47.68 -0.54 -5.69 16
30 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16
32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16
33 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16
34 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16
35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16
36 H 0.08 1.65 7.27 -2.39 -0.02 1.63 16
37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
38 H 0.08 1.64 8.11 -2.39 -0.02 1.62 16
39 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16
40 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16
41 H 0.02 1.25 7.19 -2.39 -0.02 1.24 16
42 H -0.01 -0.45 7.99 -2.38 -0.02 -0.47 16
43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16
44 H 0.03 1.23 7.68 -2.38 -0.02 1.22 16
45 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
46 H 0.09 1.36 7.27 -2.39 -0.02 1.34 16
47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16
48 H 0.10 0.85 8.08 -2.39 -0.02 0.83 16
49 H 0.10 1.04 4.51 -2.39 -0.01 1.03 16
50 H 0.20 1.95 6.20 -2.91 -0.02 1.94 16
Total: -1.00 -76.27 390.11 3.39 -72.88
By element:
Atomic # 1 Polarization: 5.88 SS G_CDS: 0.94 Total: 6.82 kcal
Atomic # 6 Polarization: -3.22 SS G_CDS: 6.24 Total: 3.02 kcal
Atomic # 7 Polarization: -109.86 SS G_CDS: -5.76 Total: -115.62 kcal
Atomic # 8 Polarization: -14.95 SS G_CDS: -0.06 Total: -15.01 kcal
Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal
Total: -76.27 3.39 -72.88 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001039120454.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.260 kcal
(2) G-P(sol) polarization free energy of solvation -76.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds