Wall clock time and date at job start Wed Apr 1 2020 03:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38567 * 119.96461 * 2 1 4 4 C 1.38820 * 118.06791 * 179.70323 * 3 2 1 5 5 C 1.39727 * 117.89694 * 0.53083 * 4 3 2 6 6 C 1.48154 * 120.17909 * 179.73896 * 5 4 3 7 7 O 1.21511 * 120.00265 * 351.36336 * 6 5 4 8 8 N 1.34779 * 119.99371 * 171.36733 * 6 5 4 9 9 C 1.46925 * 120.63487 * 351.15189 * 8 6 5 10 10 C 1.53188 * 108.77537 * 233.58916 * 9 8 6 11 11 C 1.53035 * 109.31396 * 305.36397 * 10 9 8 12 12 C 1.52998 * 109.46021 * 181.38642 * 11 10 9 13 13 H 1.08998 * 110.64708 * 296.83145 * 12 11 10 14 14 C 1.55162 * 110.72006 * 59.97469 * 12 11 10 15 15 C 1.54915 * 101.58219 * 153.86480 * 14 12 11 16 16 N 1.47418 * 104.83166 * 322.99148 * 15 14 12 17 17 C 1.36939 * 125.64857 * 204.09513 * 16 15 14 18 18 H 1.07993 * 120.00403 * 158.69828 * 17 16 15 19 19 C 1.38810 * 119.99732 * 338.69651 * 17 16 15 20 20 N 1.31629 * 120.00124 * 326.64816 * 19 17 16 21 21 Si 1.86804 * 120.00291 * 146.64616 * 19 17 16 22 22 H 1.48495 * 109.47222 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.46794 * 300.00103 * 21 19 17 24 24 H 1.48503 * 109.46964 * 59.99813 * 21 19 17 25 25 C 1.47019 * 108.70555 * 24.35503 * 16 15 14 26 26 C 1.53040 * 109.52904 * 61.37294 * 11 10 9 27 27 C 1.46930 * 120.62823 * 171.13424 * 8 6 5 28 28 N 1.32779 * 119.63341 * 359.46269 * 5 4 3 29 29 N 1.28356 * 122.02944 * 0.27357 * 28 5 4 30 30 H 1.09001 * 109.47358 * 270.01564 * 1 2 3 31 31 H 1.08999 * 109.47296 * 30.02066 * 1 2 3 32 32 H 1.09003 * 109.46878 * 150.01854 * 1 2 3 33 33 H 1.08000 * 120.96699 * 359.96562 * 3 2 1 34 34 H 1.07996 * 121.05316 * 180.29025 * 4 3 2 35 35 H 1.09004 * 109.58356 * 113.80172 * 9 8 6 36 36 H 1.08998 * 109.69918 * 353.44515 * 9 8 6 37 37 H 1.09001 * 109.49549 * 185.40890 * 10 9 8 38 38 H 1.08997 * 109.49661 * 65.32000 * 10 9 8 39 39 H 1.09001 * 109.46188 * 301.35885 * 11 10 9 40 40 H 1.08995 * 111.00853 * 35.79021 * 14 12 11 41 41 H 1.09003 * 111.03357 * 271.95124 * 14 12 11 42 42 H 1.09002 * 110.36602 * 204.14657 * 15 14 12 43 43 H 1.08997 * 110.45675 * 81.87323 * 15 14 12 44 44 H 0.97000 * 119.99466 * 353.56130 * 20 19 17 45 45 H 1.08997 * 109.88191 * 118.13269 * 25 16 15 46 46 H 1.09004 * 109.88347 * 239.29481 * 25 16 15 47 47 H 1.09004 * 109.49386 * 58.57710 * 26 11 10 48 48 H 1.08995 * 109.49989 * 178.67815 * 26 11 10 49 49 H 1.09006 * 109.58224 * 246.19957 * 27 8 6 50 50 H 1.08999 * 109.58588 * 6.48047 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1545 0.0063 5 6 4.1991 -0.1013 0.0009 6 6 5.6767 -0.2092 0.0014 7 8 6.3586 0.7848 -0.1515 8 7 6.2645 -1.4101 0.1714 9 6 5.4690 -2.5863 0.5487 10 6 6.0878 -3.2198 1.7987 11 6 7.5656 -3.5185 1.5360 12 6 8.1785 -4.1830 2.7704 13 1 8.1501 -3.5069 3.6249 14 6 7.4484 -5.5123 3.0977 15 6 8.5566 -6.3017 3.8384 16 7 9.8046 -5.9467 3.1387 17 6 10.9448 -6.7045 3.1063 18 1 11.6696 -6.5562 2.3196 19 6 11.1688 -7.6633 4.0847 20 7 10.7424 -7.4618 5.3136 21 14 12.0753 -9.2398 3.6574 22 1 12.1847 -10.0918 4.8687 23 1 11.3271 -9.9708 2.6033 24 1 13.4353 -8.9096 3.1606 25 6 9.6246 -4.6414 2.4865 26 6 8.3065 -2.2127 1.2391 27 6 7.7131 -1.5679 -0.0174 28 7 3.4497 -1.1974 0.0008 29 7 2.1672 -1.1451 0.0004 30 1 -0.3634 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6744 2.1444 -0.0006 34 1 4.1739 2.0608 0.0113 35 1 5.4746 -3.3084 -0.2679 36 1 4.4438 -2.2836 0.7618 37 1 5.5653 -4.1472 2.0332 38 1 5.9996 -2.5299 2.6378 39 1 7.6543 -4.1888 0.6811 40 1 7.1455 -6.0267 2.1857 41 1 6.5915 -5.3381 3.7485 42 1 8.3723 -7.3735 3.7654 43 1 8.6079 -5.9966 4.8836 44 1 10.3555 -6.6067 5.5585 45 1 10.3315 -3.9209 2.8978 46 1 9.7760 -4.7400 1.4115 47 1 8.1972 -1.5323 2.0837 48 1 9.3633 -2.4232 1.0753 49 1 7.9016 -2.2070 -0.8801 50 1 8.1690 -0.5913 -0.1795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039138793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:46 Heat of formation + Delta-G solvation = 50.573842 kcal Electronic energy + Delta-G solvation = -30135.259170 eV Core-core repulsion = 26163.635577 eV Total energy + Delta-G solvation = -3971.623593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.82774 -40.12599 -38.53853 -36.79470 -34.80972 -33.75084 -33.59033 -31.91888 -31.26209 -29.21126 -28.98174 -27.84832 -25.87220 -24.87241 -24.21107 -23.33575 -23.06609 -21.48084 -20.09043 -19.91417 -19.46616 -18.44876 -17.45862 -17.32759 -16.43690 -16.20693 -16.10785 -15.18105 -15.02223 -14.82203 -14.58519 -14.21117 -14.04498 -13.81325 -13.68197 -13.67423 -13.44367 -13.12739 -13.04711 -12.99908 -12.93655 -12.36902 -12.10513 -11.73371 -11.57430 -11.30722 -11.16140 -11.05747 -10.78583 -10.67887 -10.54973 -10.47592 -10.33121 -10.24934 -10.19903 -10.01069 -9.96985 -9.85622 -9.56051 -9.49755 -8.80346 -8.26299 -6.84124 -6.07960 -3.09209 -0.06106 0.21540 2.23942 2.57012 3.12759 3.32956 3.53322 3.57839 3.75652 3.78786 3.94248 4.08373 4.31614 4.40923 4.63915 4.79447 4.83101 4.86565 4.87067 4.94744 5.03639 5.13240 5.25607 5.26606 5.28715 5.38447 5.41693 5.49519 5.56005 5.57203 5.61358 5.68415 5.79696 5.87885 5.97266 5.98772 6.05222 6.11911 6.16325 6.24072 6.39112 6.45029 6.49838 6.58385 6.74433 6.95896 7.04475 7.10650 7.14886 7.70595 7.93112 8.05416 8.56112 9.08343 9.87312 10.48327 11.22881 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002079 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.344388 B =13464.262656 C =14204.485274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.085 3.915 3 C -0.121 4.121 4 C -0.062 4.062 5 C 0.021 3.979 6 C 0.573 3.427 7 O -0.535 6.535 8 N -0.584 5.584 9 C 0.077 3.923 10 C -0.128 4.128 11 C -0.075 4.075 12 C -0.093 4.093 13 H 0.068 0.932 14 C -0.128 4.128 15 C 0.143 3.857 16 N -0.601 5.601 17 C -0.341 4.341 18 H 0.060 0.940 19 C -0.023 4.023 20 N -0.904 5.904 21 Si 1.057 2.943 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.293 1.293 25 C 0.140 3.860 26 C -0.128 4.128 27 C 0.110 3.890 28 N -0.198 5.198 29 N -0.247 5.247 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.071 0.929 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.022 0.978 44 H 0.267 0.733 45 H 0.018 0.982 46 H 0.024 0.976 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.818 18.841 -11.798 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.058 4.058 3 C -0.150 4.150 4 C -0.090 4.090 5 C -0.125 4.125 6 C 0.358 3.642 7 O -0.411 6.411 8 N -0.315 5.315 9 C -0.045 4.045 10 C -0.167 4.167 11 C -0.094 4.094 12 C -0.112 4.112 13 H 0.086 0.914 14 C -0.167 4.167 15 C 0.017 3.983 16 N -0.327 5.327 17 C -0.469 4.469 18 H 0.078 0.922 19 C -0.226 4.226 20 N -0.544 5.544 21 Si 0.887 3.113 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.220 1.220 25 C 0.015 3.985 26 C -0.166 4.166 27 C -0.012 4.012 28 N -0.043 5.043 29 N -0.090 5.090 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.181 0.819 35 H 0.089 0.911 36 H 0.152 0.848 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.036 0.964 46 H 0.042 0.958 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.091 0.909 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.886 16.195 -11.300 28.743 hybrid contribution -0.231 3.007 -0.518 3.060 sum -21.117 19.202 -11.819 30.892 Atomic orbital electron populations 1.20771 0.86940 1.04496 1.04086 1.23106 0.99431 0.90416 0.92832 1.22354 0.94202 1.00272 0.98178 1.22440 0.95093 0.99101 0.92411 1.22896 0.96490 0.92137 1.00940 1.17594 0.85196 0.83625 0.77784 1.90788 1.63523 1.35874 1.50939 1.48017 1.09062 1.08618 1.65803 1.22902 0.97824 0.86596 0.97204 1.22012 0.96187 1.01134 0.97327 1.21156 0.93883 0.95896 0.98444 1.22167 0.96240 0.96257 0.96534 0.91363 1.22825 0.97605 0.95996 1.00235 1.21481 0.85020 0.97380 0.94371 1.44567 1.09907 1.17117 1.61154 1.19630 0.99698 1.17768 1.09828 0.92196 1.25735 1.01172 1.03705 0.91954 1.70775 1.39988 1.27430 1.16168 0.83644 0.75514 0.76747 0.75390 1.21174 1.22114 1.21992 1.21367 0.92727 0.88369 0.96062 1.21975 1.00438 0.96966 0.97240 1.21784 0.78691 1.02365 0.98364 1.73232 0.99423 1.24799 1.06857 1.73156 1.01294 1.24803 1.09791 0.89304 0.89915 0.89499 0.82403 0.81911 0.91070 0.84830 0.90127 0.92002 0.90796 0.91758 0.92194 0.93689 0.95997 0.92222 0.96400 0.95841 0.91582 0.90028 0.90925 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.19 36.01 0.37 0.02 16 2 C 0.09 0.58 6.87 -82.32 -0.57 0.01 16 3 C -0.12 -0.66 9.86 -39.24 -0.39 -1.05 16 4 C -0.06 -0.48 9.73 -38.81 -0.38 -0.86 16 5 C 0.02 0.22 6.66 -82.83 -0.55 -0.33 16 6 C 0.57 7.22 7.65 -12.19 -0.09 7.13 16 7 O -0.53 -7.84 15.86 5.36 0.08 -7.76 16 8 N -0.58 -7.02 2.97 -173.77 -0.52 -7.54 16 9 C 0.08 0.87 5.87 -3.71 -0.02 0.84 16 10 C -0.13 -1.52 5.16 -26.62 -0.14 -1.66 16 11 C -0.07 -1.01 1.56 -90.58 -0.14 -1.15 16 12 C -0.09 -1.58 2.48 -88.78 -0.22 -1.80 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.13 -2.30 5.37 -24.58 -0.13 -2.43 16 15 C 0.14 3.40 5.60 -2.53 -0.01 3.39 16 16 N -0.60 -15.71 3.23 -170.07 -0.55 -16.26 16 17 C -0.34 -9.95 9.92 -15.06 -0.15 -10.10 16 18 H 0.06 1.75 8.01 -52.49 -0.42 1.33 16 19 C -0.02 -0.67 5.03 -17.43 -0.09 -0.75 16 20 N -0.90 -27.94 13.01 55.49 0.72 -27.22 16 21 Si 1.06 25.87 30.03 -169.99 -5.10 20.76 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.14 2.99 5.98 -3.06 -0.02 2.97 16 26 C -0.13 -1.61 5.22 -26.61 -0.14 -1.75 16 27 C 0.11 1.28 6.44 -3.71 -0.02 1.26 16 28 N -0.20 -2.17 7.35 33.32 0.24 -1.93 16 29 N -0.25 -2.47 11.43 33.63 0.38 -2.08 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.09 8.09 -51.93 -0.42 -0.33 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.16 0.28 8.06 -52.49 -0.42 -0.15 16 34 H 0.16 1.07 7.74 -52.49 -0.41 0.66 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.14 1.52 4.08 -125.02 -0.51 1.01 16 37 H 0.08 0.93 7.19 -51.93 -0.37 0.56 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 40 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 41 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.04 1.15 8.11 -51.93 -0.42 0.73 16 43 H 0.02 0.56 7.04 -51.93 -0.37 0.20 16 44 H 0.27 8.36 6.81 -40.82 -0.28 8.08 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.02 0.50 7.75 -51.93 -0.40 0.09 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.08 1.05 7.45 -51.93 -0.39 0.66 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -34.96 391.47 -9.73 -44.69 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -8.21 Total: -2.31 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.69 Total: -6.26 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.28 Total: -55.03 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.08 Total: -7.76 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.10 Total: 20.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.96 -9.73 -44.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039138793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.266 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds