Wall clock time and date at job start Wed Apr 1 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38567 * 119.96461 * 2 1 4 4 C 1.38820 * 118.06791 * 179.70323 * 3 2 1 5 5 C 1.39727 * 117.89694 * 0.53083 * 4 3 2 6 6 C 1.48154 * 120.17909 * 179.73896 * 5 4 3 7 7 O 1.21511 * 120.00265 * 351.36336 * 6 5 4 8 8 N 1.34779 * 119.99371 * 171.36733 * 6 5 4 9 9 C 1.46925 * 120.63487 * 351.15189 * 8 6 5 10 10 C 1.53188 * 108.77537 * 233.58916 * 9 8 6 11 11 C 1.53035 * 109.31396 * 305.36397 * 10 9 8 12 12 C 1.52998 * 109.46021 * 181.38642 * 11 10 9 13 13 H 1.08998 * 110.64708 * 296.83145 * 12 11 10 14 14 C 1.55162 * 110.72006 * 59.97469 * 12 11 10 15 15 C 1.54915 * 101.58219 * 153.86480 * 14 12 11 16 16 N 1.47418 * 104.83166 * 322.99148 * 15 14 12 17 17 C 1.36939 * 125.64857 * 204.09513 * 16 15 14 18 18 H 1.07993 * 120.00403 * 158.69828 * 17 16 15 19 19 C 1.38810 * 119.99732 * 338.69651 * 17 16 15 20 20 N 1.31629 * 120.00124 * 326.64816 * 19 17 16 21 21 Si 1.86804 * 120.00291 * 146.64616 * 19 17 16 22 22 H 1.48495 * 109.47222 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.46794 * 300.00103 * 21 19 17 24 24 H 1.48503 * 109.46964 * 59.99813 * 21 19 17 25 25 C 1.47019 * 108.70555 * 24.35503 * 16 15 14 26 26 C 1.53040 * 109.52904 * 61.37294 * 11 10 9 27 27 C 1.46930 * 120.62823 * 171.13424 * 8 6 5 28 28 N 1.32779 * 119.63341 * 359.46269 * 5 4 3 29 29 N 1.28356 * 122.02944 * 0.27357 * 28 5 4 30 30 H 1.09001 * 109.47358 * 270.01564 * 1 2 3 31 31 H 1.08999 * 109.47296 * 30.02066 * 1 2 3 32 32 H 1.09003 * 109.46878 * 150.01854 * 1 2 3 33 33 H 1.08000 * 120.96699 * 359.96562 * 3 2 1 34 34 H 1.07996 * 121.05316 * 180.29025 * 4 3 2 35 35 H 1.09004 * 109.58356 * 113.80172 * 9 8 6 36 36 H 1.08998 * 109.69918 * 353.44515 * 9 8 6 37 37 H 1.09001 * 109.49549 * 185.40890 * 10 9 8 38 38 H 1.08997 * 109.49661 * 65.32000 * 10 9 8 39 39 H 1.09001 * 109.46188 * 301.35885 * 11 10 9 40 40 H 1.08995 * 111.00853 * 35.79021 * 14 12 11 41 41 H 1.09003 * 111.03357 * 271.95124 * 14 12 11 42 42 H 1.09002 * 110.36602 * 204.14657 * 15 14 12 43 43 H 1.08997 * 110.45675 * 81.87323 * 15 14 12 44 44 H 0.97000 * 119.99466 * 353.56130 * 20 19 17 45 45 H 1.08997 * 109.88191 * 118.13269 * 25 16 15 46 46 H 1.09004 * 109.88347 * 239.29481 * 25 16 15 47 47 H 1.09004 * 109.49386 * 58.57710 * 26 11 10 48 48 H 1.08995 * 109.49989 * 178.67815 * 26 11 10 49 49 H 1.09006 * 109.58224 * 246.19957 * 27 8 6 50 50 H 1.08999 * 109.58588 * 6.48047 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1545 0.0063 5 6 4.1991 -0.1013 0.0009 6 6 5.6767 -0.2092 0.0014 7 8 6.3586 0.7848 -0.1515 8 7 6.2645 -1.4101 0.1714 9 6 5.4690 -2.5863 0.5487 10 6 6.0878 -3.2198 1.7987 11 6 7.5656 -3.5185 1.5360 12 6 8.1785 -4.1830 2.7704 13 1 8.1501 -3.5069 3.6249 14 6 7.4484 -5.5123 3.0977 15 6 8.5566 -6.3017 3.8384 16 7 9.8046 -5.9467 3.1387 17 6 10.9448 -6.7045 3.1063 18 1 11.6696 -6.5562 2.3196 19 6 11.1688 -7.6633 4.0847 20 7 10.7424 -7.4618 5.3136 21 14 12.0753 -9.2398 3.6574 22 1 12.1847 -10.0918 4.8687 23 1 11.3271 -9.9708 2.6033 24 1 13.4353 -8.9096 3.1606 25 6 9.6246 -4.6414 2.4865 26 6 8.3065 -2.2127 1.2391 27 6 7.7131 -1.5679 -0.0174 28 7 3.4497 -1.1974 0.0008 29 7 2.1672 -1.1451 0.0004 30 1 -0.3634 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5136 33 1 1.6744 2.1444 -0.0006 34 1 4.1739 2.0608 0.0113 35 1 5.4746 -3.3084 -0.2679 36 1 4.4438 -2.2836 0.7618 37 1 5.5653 -4.1472 2.0332 38 1 5.9996 -2.5299 2.6378 39 1 7.6543 -4.1888 0.6811 40 1 7.1455 -6.0267 2.1857 41 1 6.5915 -5.3381 3.7485 42 1 8.3723 -7.3735 3.7654 43 1 8.6079 -5.9966 4.8836 44 1 10.3555 -6.6067 5.5585 45 1 10.3315 -3.9209 2.8978 46 1 9.7760 -4.7400 1.4115 47 1 8.1972 -1.5323 2.0837 48 1 9.3633 -2.4232 1.0753 49 1 7.9016 -2.2070 -0.8801 50 1 8.1690 -0.5913 -0.1795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039138793.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:45 Heat of formation + Delta-G solvation = 29.128438 kcal Electronic energy + Delta-G solvation = -30136.189112 eV Core-core repulsion = 26163.635577 eV Total energy + Delta-G solvation = -3972.553536 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.49856 -41.06039 -39.88357 -38.15190 -35.67016 -35.04757 -34.20344 -33.55091 -32.25658 -30.85163 -29.92717 -29.08588 -26.94263 -26.22347 -25.23735 -24.49337 -23.93649 -22.48974 -21.96420 -21.06391 -20.70187 -19.47508 -19.21158 -18.17198 -17.25934 -17.00511 -16.76419 -16.48443 -16.43957 -15.81944 -15.71275 -15.63837 -15.28225 -14.97703 -14.85412 -14.63529 -14.53556 -14.37482 -14.15889 -13.72044 -13.70637 -13.38749 -13.20925 -13.11534 -12.82705 -12.60613 -12.52655 -12.46860 -12.23556 -12.13712 -11.91645 -11.85954 -11.62917 -11.52510 -11.46177 -11.36362 -11.18724 -11.04740 -10.83909 -10.50028 -10.36717 -9.76298 -9.01213 -8.37848 -5.36926 -0.68643 -0.32953 1.44664 1.55364 1.63207 1.72190 1.83181 2.44920 2.62488 2.65854 3.10614 3.22463 3.38510 3.52005 3.58277 3.61255 3.69786 3.77000 3.84980 3.97033 4.03081 4.09206 4.26361 4.34378 4.36589 4.44479 4.51149 4.51561 4.56182 4.64125 4.72063 4.78210 4.80115 4.86721 4.89908 4.91200 4.94764 4.99430 5.02497 5.04164 5.11638 5.16243 5.22669 5.28407 5.32207 5.35826 5.53526 5.55037 5.71075 6.18582 6.27991 6.79371 6.89351 7.42363 7.68722 8.31474 8.90722 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002079 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.344388 B =13464.262656 C =14204.485274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.084 3.916 3 C -0.101 4.101 4 C -0.070 4.070 5 C -0.001 4.001 6 C 0.570 3.430 7 O -0.564 6.564 8 N -0.587 5.587 9 C 0.083 3.917 10 C -0.121 4.121 11 C -0.064 4.064 12 C -0.077 4.077 13 H 0.068 0.932 14 C -0.110 4.110 15 C 0.142 3.858 16 N -0.624 5.624 17 C -0.355 4.355 18 H 0.053 0.947 19 C -0.075 4.075 20 N -0.930 5.930 21 Si 1.112 2.888 22 H -0.290 1.290 23 H -0.280 1.280 24 H -0.273 1.273 25 C 0.137 3.863 26 C -0.122 4.122 27 C 0.113 3.887 28 N -0.216 5.216 29 N -0.277 5.277 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.203 0.797 34 H 0.172 0.828 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.017 0.983 43 H -0.002 1.002 44 H 0.251 0.749 45 H 0.004 0.996 46 H 0.030 0.970 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.384 19.991 -13.215 34.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.098 4.098 5 C -0.147 4.147 6 C 0.356 3.644 7 O -0.442 6.442 8 N -0.317 5.317 9 C -0.040 4.040 10 C -0.159 4.159 11 C -0.083 4.083 12 C -0.096 4.096 13 H 0.086 0.914 14 C -0.148 4.148 15 C 0.017 3.983 16 N -0.351 5.351 17 C -0.484 4.484 18 H 0.071 0.929 19 C -0.273 4.273 20 N -0.571 5.571 21 Si 0.936 3.064 22 H -0.216 1.216 23 H -0.206 1.206 24 H -0.199 1.199 25 C 0.012 3.988 26 C -0.160 4.160 27 C -0.009 4.009 28 N -0.061 5.061 29 N -0.121 5.121 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.220 0.780 34 H 0.190 0.810 35 H 0.095 0.905 36 H 0.155 0.845 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.036 0.964 43 H 0.016 0.984 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.048 0.952 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.471 17.357 -12.740 31.851 hybrid contribution 0.491 2.747 -0.090 2.792 sum -22.980 20.104 -12.830 33.119 Atomic orbital electron populations 1.20930 0.84305 1.05730 1.05169 1.23731 1.01093 0.90014 0.91016 1.22829 0.93097 1.01629 0.95444 1.22659 0.96409 0.98330 0.92402 1.22741 0.95344 0.93507 1.03062 1.17926 0.86176 0.83231 0.77019 1.90758 1.64452 1.36678 1.52361 1.48107 1.09104 1.08876 1.65619 1.22912 0.97861 0.86280 0.96924 1.21955 0.94754 1.01583 0.97653 1.21054 0.94903 0.95869 0.96511 1.22061 0.93313 0.95969 0.98242 0.91386 1.22736 0.96446 0.95174 1.00451 1.21468 0.86418 0.96604 0.93828 1.44897 1.09933 1.18956 1.61330 1.19893 1.00653 1.18540 1.09282 0.92931 1.27222 1.01989 1.06623 0.91427 1.70911 1.42189 1.26673 1.17315 0.82918 0.75452 0.72798 0.75241 1.21564 1.20615 1.19904 1.21523 0.95411 0.86193 0.95681 1.21891 1.00136 0.96448 0.97564 1.21732 0.78795 1.02191 0.98166 1.73079 1.00113 1.25228 1.07712 1.73084 1.00908 1.26773 1.11321 0.88065 0.86980 0.90000 0.77984 0.81039 0.90498 0.84478 0.89180 0.92266 0.90617 0.90512 0.89232 0.96440 0.98420 0.93998 0.97823 0.95165 0.92194 0.90530 0.89741 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.32 10.19 71.24 0.73 0.41 16 2 C 0.08 0.92 6.87 42.59 0.29 1.21 16 3 C -0.10 -0.77 9.86 22.49 0.22 -0.55 16 4 C -0.07 -0.97 9.73 22.77 0.22 -0.74 16 5 C 0.00 -0.02 6.66 42.00 0.28 0.26 16 6 C 0.57 14.21 7.65 86.88 0.66 14.88 16 7 O -0.56 -16.58 15.86 -3.75 -0.06 -16.64 16 8 N -0.59 -13.69 2.97 -821.96 -2.44 -16.13 16 9 C 0.08 1.74 5.87 86.36 0.51 2.25 16 10 C -0.12 -2.65 5.16 30.67 0.16 -2.50 16 11 C -0.06 -1.65 1.56 -10.77 -0.02 -1.66 16 12 C -0.08 -2.54 2.48 -9.60 -0.02 -2.57 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 14 C -0.11 -3.82 5.37 31.99 0.17 -3.64 16 15 C 0.14 6.93 5.60 86.86 0.49 7.42 16 16 N -0.62 -33.43 3.23 -691.98 -2.24 -35.67 16 17 C -0.36 -21.17 9.92 84.03 0.83 -20.33 16 18 H 0.05 3.14 8.01 -2.91 -0.02 3.12 16 19 C -0.08 -4.51 5.03 84.86 0.43 -4.08 16 20 N -0.93 -59.22 13.01 21.65 0.28 -58.94 16 21 Si 1.11 52.73 30.03 68.60 2.06 54.79 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 C 0.14 5.89 5.98 86.73 0.52 6.40 16 26 C -0.12 -3.00 5.22 30.67 0.16 -2.84 16 27 C 0.11 2.57 6.44 86.36 0.56 3.12 16 28 N -0.22 -4.56 7.35 -48.48 -0.36 -4.92 16 29 N -0.28 -5.15 11.43 -47.53 -0.54 -5.70 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.11 -0.28 8.09 -2.39 -0.02 -0.30 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.20 -0.35 8.06 -2.91 -0.02 -0.38 16 34 H 0.17 1.99 7.74 -2.91 -0.02 1.96 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.14 2.97 4.08 -96.94 -0.40 2.58 16 37 H 0.09 1.83 7.19 -2.39 -0.02 1.82 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.96 8.07 -2.39 -0.02 1.95 16 40 H 0.08 2.51 8.05 -2.39 -0.02 2.49 16 41 H 0.09 2.62 8.08 -2.39 -0.02 2.60 16 42 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 43 H 0.00 -0.11 7.04 -2.39 -0.02 -0.12 16 44 H 0.25 16.39 6.81 -92.71 -0.63 15.76 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.03 1.27 7.75 -2.38 -0.02 1.25 16 47 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 48 H 0.08 1.95 7.45 -2.39 -0.02 1.93 16 49 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 50 H 0.09 2.09 7.00 -2.39 -0.02 2.07 16 Total: -1.00 -79.42 391.47 3.57 -75.85 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.69 Total: 10.33 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 6.18 Total: -2.97 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -5.30 Total: -121.36 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.06 Total: -16.64 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 2.06 Total: 54.79 kcal Total: -79.42 3.57 -75.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039138793.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.975 kcal (2) G-P(sol) polarization free energy of solvation -79.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds