Wall clock time and date at job start Wed Apr 1 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38570 * 119.96425 * 2 1 4 4 C 1.38827 * 118.06938 * 179.73228 * 3 2 1 5 5 C 1.39716 * 117.89882 * 0.52494 * 4 3 2 6 6 C 1.48150 * 120.18446 * 179.76236 * 5 4 3 7 7 O 1.21510 * 119.99792 * 23.00319 * 6 5 4 8 8 N 1.34776 * 119.99805 * 202.99888 * 6 5 4 9 9 C 1.46934 * 120.62863 * 179.07112 * 8 6 5 10 10 C 1.53187 * 108.77324 * 233.58575 * 9 8 6 11 11 C 1.53040 * 109.31832 * 305.36408 * 10 9 8 12 12 C 1.52995 * 109.46156 * 181.38505 * 11 10 9 13 13 H 1.08999 * 110.64306 * 298.31282 * 12 11 10 14 14 C 1.55154 * 110.71596 * 174.97506 * 12 11 10 15 15 C 1.55139 * 101.48451 * 205.96958 * 14 12 11 16 16 N 1.47424 * 104.72018 * 37.29782 * 15 14 12 17 17 C 1.36932 * 125.64563 * 155.81568 * 16 15 14 18 18 H 1.08000 * 119.99837 * 191.76406 * 17 16 15 19 19 C 1.38813 * 120.00059 * 11.76468 * 17 16 15 20 20 N 1.31610 * 120.00255 * 32.95875 * 19 17 16 21 21 Si 1.86810 * 119.99889 * 212.95837 * 19 17 16 22 22 H 1.48495 * 109.46892 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46767 * 120.00043 * 21 19 17 24 24 H 1.48503 * 109.46719 * 240.00110 * 21 19 17 25 25 C 1.47019 * 108.70240 * 335.55233 * 16 15 14 26 26 C 1.53045 * 109.53279 * 61.36176 * 11 10 9 27 27 C 1.46922 * 120.63299 * 359.04876 * 8 6 5 28 28 N 1.32787 * 119.62940 * 359.48808 * 5 4 3 29 29 N 1.28346 * 122.03278 * 0.25543 * 28 5 4 30 30 H 1.09004 * 109.46817 * 269.96887 * 1 2 3 31 31 H 1.08995 * 109.47548 * 29.97805 * 1 2 3 32 32 H 1.09004 * 109.47049 * 149.98008 * 1 2 3 33 33 H 1.07997 * 120.96577 * 0.02609 * 3 2 1 34 34 H 1.08003 * 121.05237 * 180.28943 * 4 3 2 35 35 H 1.08996 * 109.58423 * 113.79849 * 9 8 6 36 36 H 1.08996 * 109.70141 * 353.44316 * 9 8 6 37 37 H 1.09005 * 109.49473 * 185.41364 * 10 9 8 38 38 H 1.09004 * 109.52302 * 65.33379 * 10 9 8 39 39 H 1.08999 * 109.45869 * 301.36274 * 11 10 9 40 40 H 1.09001 * 111.00739 * 324.20702 * 14 12 11 41 41 H 1.08995 * 111.00428 * 88.06557 * 14 12 11 42 42 H 1.09000 * 110.49374 * 278.45162 * 15 14 12 43 43 H 1.09001 * 110.33971 * 156.06340 * 15 14 12 44 44 H 0.97008 * 119.99880 * 7.38461 * 20 19 17 45 45 H 1.09007 * 109.88002 * 120.70549 * 25 16 15 46 46 H 1.08999 * 109.88372 * 241.71051 * 25 16 15 47 47 H 1.09002 * 109.49272 * 58.59727 * 26 11 10 48 48 H 1.09006 * 109.49228 * 178.68570 * 26 11 10 49 49 H 1.09004 * 109.58747 * 246.19736 * 27 8 6 50 50 H 1.08999 * 109.58992 * 6.62343 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1546 0.0057 5 6 4.1992 -0.1011 -0.0002 6 6 5.6767 -0.2091 0.0002 7 8 6.3530 0.7107 0.4165 8 7 6.2708 -1.3274 -0.4611 9 6 7.7355 -1.4413 -0.4860 10 6 8.1767 -1.8176 -1.9038 11 6 7.4402 -3.0850 -2.3436 12 6 7.9041 -3.4835 -3.7460 13 1 7.6676 -2.7000 -4.4660 14 6 7.2700 -4.8343 -4.1707 15 6 8.3154 -5.3594 -5.1897 16 7 9.6186 -4.9557 -4.6311 17 6 10.8198 -5.5595 -4.8911 18 1 11.6865 -5.3169 -4.2941 19 6 10.9235 -6.4833 -5.9219 20 7 10.1892 -6.3456 -7.0054 21 14 12.1055 -7.9221 -5.7713 22 1 12.8088 -7.8503 -4.4654 23 1 11.3474 -9.1963 -5.8553 24 1 13.0993 -7.8637 -6.8733 25 6 9.4158 -3.7937 -3.7536 26 6 5.9328 -2.8210 -2.3608 27 6 5.4661 -2.4561 -0.9481 28 7 3.4497 -1.1972 -0.0006 29 7 2.1673 -1.1450 -0.0006 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6743 2.1444 0.0004 34 1 4.1740 2.0609 0.0107 35 1 8.0537 -2.2146 0.2131 36 1 8.1830 -0.4880 -0.2049 37 1 9.2515 -1.9993 -1.9142 38 1 7.9388 -1.0028 -2.5877 39 1 7.6592 -3.8930 -1.6454 40 1 7.1777 -5.5077 -3.3186 41 1 6.3037 -4.6787 -4.6502 42 1 8.1618 -4.8989 -6.1656 43 1 8.2560 -6.4450 -5.2680 44 1 9.6563 -5.5449 -7.1316 45 1 9.7510 -4.0290 -2.7434 46 1 9.9704 -2.9376 -4.1379 47 1 5.7157 -1.9967 -3.0401 48 1 5.4105 -3.7170 -2.6965 49 1 5.5994 -3.3123 -0.2868 50 1 4.4143 -2.1712 -0.9730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039138794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:50 Heat of formation + Delta-G solvation = 50.709349 kcal Electronic energy + Delta-G solvation = -30173.206434 eV Core-core repulsion = 26201.588717 eV Total energy + Delta-G solvation = -3971.617717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83178 -40.14070 -38.56345 -36.82221 -34.79862 -33.79106 -33.60067 -31.90706 -31.29445 -29.21476 -29.02712 -27.82859 -25.86475 -24.88548 -24.23534 -23.39747 -23.07689 -21.50078 -20.08055 -19.89332 -19.46579 -18.45773 -17.50818 -17.40062 -16.55067 -16.22157 -16.00533 -15.19703 -15.02579 -14.88263 -14.57967 -14.16205 -14.05413 -13.81840 -13.68857 -13.68186 -13.44370 -13.11637 -13.06766 -12.96671 -12.91964 -12.36813 -12.12675 -11.80131 -11.62309 -11.33642 -11.20354 -11.09396 -10.77722 -10.70789 -10.55688 -10.40380 -10.34067 -10.24246 -10.19491 -10.03652 -9.99219 -9.87089 -9.60918 -9.53184 -8.83489 -8.29651 -6.89864 -6.07882 -3.02861 -0.03097 0.21735 2.23045 2.54900 3.06733 3.36235 3.55875 3.58622 3.72700 3.78738 3.94155 4.08964 4.31711 4.41475 4.63875 4.76881 4.79675 4.84101 4.86947 4.94810 5.01124 5.11796 5.23397 5.26133 5.28193 5.37130 5.41780 5.47628 5.52866 5.55512 5.60586 5.65778 5.77052 5.85392 5.93892 5.95835 5.99302 6.08612 6.13090 6.21665 6.36047 6.41228 6.47137 6.54808 6.70998 6.93223 7.06921 7.08477 7.12866 7.70205 7.86003 8.05462 8.54107 9.07696 9.87981 10.45164 11.25238 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.002110 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.873528 B =13268.948568 C =14032.009782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.085 3.915 3 C -0.121 4.121 4 C -0.062 4.062 5 C 0.022 3.978 6 C 0.574 3.426 7 O -0.535 6.535 8 N -0.583 5.583 9 C 0.110 3.890 10 C -0.129 4.129 11 C -0.075 4.075 12 C -0.093 4.093 13 H 0.068 0.932 14 C -0.129 4.129 15 C 0.144 3.856 16 N -0.604 5.604 17 C -0.338 4.338 18 H 0.066 0.934 19 C -0.025 4.025 20 N -0.913 5.913 21 Si 1.059 2.941 22 H -0.292 1.292 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.143 3.857 26 C -0.129 4.129 27 C 0.080 3.920 28 N -0.198 5.198 29 N -0.246 5.246 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.050 0.950 44 H 0.268 0.732 45 H 0.025 0.975 46 H 0.017 0.983 47 H 0.061 0.939 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.619 16.088 15.597 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.058 4.058 3 C -0.150 4.150 4 C -0.091 4.091 5 C -0.124 4.124 6 C 0.359 3.641 7 O -0.411 6.411 8 N -0.314 5.314 9 C -0.012 4.012 10 C -0.167 4.167 11 C -0.094 4.094 12 C -0.112 4.112 13 H 0.087 0.913 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.331 5.331 17 C -0.465 4.465 18 H 0.084 0.916 19 C -0.227 4.227 20 N -0.553 5.553 21 Si 0.889 3.111 22 H -0.219 1.219 23 H -0.217 1.217 24 H -0.223 1.223 25 C 0.017 3.983 26 C -0.167 4.167 27 C -0.043 4.043 28 N -0.044 5.044 29 N -0.090 5.090 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.043 0.957 46 H 0.035 0.965 47 H 0.080 0.920 48 H 0.098 0.902 49 H 0.092 0.908 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.658 13.488 15.091 28.215 hybrid contribution -0.276 2.963 0.584 3.032 sum -19.934 16.451 15.675 30.227 Atomic orbital electron populations 1.20767 0.86926 1.04565 1.04021 1.23098 0.99437 0.90392 0.92886 1.22341 0.94179 1.00277 0.98206 1.22415 0.95138 0.98959 0.92622 1.22847 0.96457 0.92180 1.00903 1.17593 0.85175 0.82653 0.78727 1.90796 1.63856 1.38545 1.47943 1.48029 1.07731 1.15415 1.60238 1.21778 0.78296 1.03155 0.97958 1.21999 1.01244 0.98179 0.95297 1.21157 0.93954 0.97077 0.97190 1.22166 0.96614 0.97287 0.95135 0.91327 1.22882 0.97925 0.96143 0.99785 1.21537 0.84523 0.98445 0.93621 1.44625 1.03097 1.31772 1.53638 1.19753 0.87938 1.23356 1.15464 0.91633 1.25623 1.02799 1.02787 0.91451 1.70706 1.30430 1.31043 1.23161 0.83657 0.75531 0.77050 0.74891 1.21858 1.21686 1.22337 1.21316 0.92341 0.90188 0.94432 1.22009 0.96515 1.02064 0.96104 1.22786 0.98072 0.88438 0.94993 1.73204 0.99519 1.25028 1.06642 1.73137 1.01144 1.24770 1.09965 0.89376 0.89878 0.89462 0.82395 0.82042 0.90849 0.88919 0.89872 0.91625 0.90722 0.91700 0.92195 0.96138 0.93175 0.92105 0.95715 0.96472 0.92029 0.90165 0.90764 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.35 10.19 36.00 0.37 0.02 16 2 C 0.08 0.58 6.87 -82.32 -0.57 0.02 16 3 C -0.12 -0.67 9.86 -39.24 -0.39 -1.06 16 4 C -0.06 -0.49 9.73 -38.81 -0.38 -0.87 16 5 C 0.02 0.23 6.51 -82.83 -0.54 -0.31 16 6 C 0.57 7.24 7.62 -12.19 -0.09 7.14 16 7 O -0.53 -7.89 16.04 5.36 0.09 -7.80 16 8 N -0.58 -6.95 2.97 -173.78 -0.52 -7.47 16 9 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16 10 C -0.13 -1.59 5.17 -26.61 -0.14 -1.73 16 11 C -0.07 -0.99 1.52 -90.58 -0.14 -1.13 16 12 C -0.09 -1.55 2.49 -88.79 -0.22 -1.77 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.13 -2.30 5.61 -24.46 -0.14 -2.44 16 15 C 0.14 3.43 5.33 -2.40 -0.01 3.41 16 16 N -0.60 -15.71 3.33 -169.93 -0.57 -16.28 16 17 C -0.34 -9.80 9.98 -15.06 -0.15 -9.95 16 18 H 0.07 1.91 8.01 -52.49 -0.42 1.49 16 19 C -0.02 -0.73 4.98 -17.43 -0.09 -0.82 16 20 N -0.91 -28.14 12.80 55.49 0.71 -27.43 16 21 Si 1.06 25.96 30.03 -169.99 -5.10 20.85 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.14 3.00 5.83 -3.07 -0.02 2.98 16 26 C -0.13 -1.49 5.21 -26.61 -0.14 -1.63 16 27 C 0.08 0.88 6.01 -3.72 -0.02 0.86 16 28 N -0.20 -2.20 7.63 33.32 0.25 -1.95 16 29 N -0.25 -2.49 11.43 33.62 0.38 -2.10 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.10 8.09 -51.93 -0.42 -0.32 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.16 0.29 8.06 -52.49 -0.42 -0.13 16 34 H 0.16 1.05 7.88 -52.48 -0.41 0.64 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 1.11 7.02 -51.93 -0.36 0.75 16 37 H 0.08 1.06 7.11 -51.93 -0.37 0.69 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 40 H 0.06 1.13 8.04 -51.93 -0.42 0.71 16 41 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 42 H 0.02 0.52 7.02 -51.93 -0.36 0.16 16 43 H 0.05 1.31 7.79 -51.93 -0.40 0.90 16 44 H 0.27 8.32 6.43 -40.82 -0.26 8.05 16 45 H 0.02 0.51 7.56 -51.92 -0.39 0.12 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.91 7.37 -51.93 -0.38 0.52 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.13 1.43 4.01 -110.97 -0.44 0.99 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -34.99 390.62 -9.64 -44.64 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.10 Total: -2.33 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.68 Total: -6.03 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.27 Total: -55.22 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.10 Total: 20.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.99 -9.64 -44.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039138794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.347 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds