Wall clock time and date at job start Wed Apr 1 2020 03:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38570 * 119.96425 * 2 1 4 4 C 1.38827 * 118.06938 * 179.73228 * 3 2 1 5 5 C 1.39716 * 117.89882 * 0.52494 * 4 3 2 6 6 C 1.48150 * 120.18446 * 179.76236 * 5 4 3 7 7 O 1.21510 * 119.99792 * 23.00319 * 6 5 4 8 8 N 1.34776 * 119.99805 * 202.99888 * 6 5 4 9 9 C 1.46934 * 120.62863 * 179.07112 * 8 6 5 10 10 C 1.53187 * 108.77324 * 233.58575 * 9 8 6 11 11 C 1.53040 * 109.31832 * 305.36408 * 10 9 8 12 12 C 1.52995 * 109.46156 * 181.38505 * 11 10 9 13 13 H 1.08999 * 110.64306 * 298.31282 * 12 11 10 14 14 C 1.55154 * 110.71596 * 174.97506 * 12 11 10 15 15 C 1.55139 * 101.48451 * 205.96958 * 14 12 11 16 16 N 1.47424 * 104.72018 * 37.29782 * 15 14 12 17 17 C 1.36932 * 125.64563 * 155.81568 * 16 15 14 18 18 H 1.08000 * 119.99837 * 191.76406 * 17 16 15 19 19 C 1.38813 * 120.00059 * 11.76468 * 17 16 15 20 20 N 1.31610 * 120.00255 * 32.95875 * 19 17 16 21 21 Si 1.86810 * 119.99889 * 212.95837 * 19 17 16 22 22 H 1.48495 * 109.46892 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46767 * 120.00043 * 21 19 17 24 24 H 1.48503 * 109.46719 * 240.00110 * 21 19 17 25 25 C 1.47019 * 108.70240 * 335.55233 * 16 15 14 26 26 C 1.53045 * 109.53279 * 61.36176 * 11 10 9 27 27 C 1.46922 * 120.63299 * 359.04876 * 8 6 5 28 28 N 1.32787 * 119.62940 * 359.48808 * 5 4 3 29 29 N 1.28346 * 122.03278 * 0.25543 * 28 5 4 30 30 H 1.09004 * 109.46817 * 269.96887 * 1 2 3 31 31 H 1.08995 * 109.47548 * 29.97805 * 1 2 3 32 32 H 1.09004 * 109.47049 * 149.98008 * 1 2 3 33 33 H 1.07997 * 120.96577 * 0.02609 * 3 2 1 34 34 H 1.08003 * 121.05237 * 180.28943 * 4 3 2 35 35 H 1.08996 * 109.58423 * 113.79849 * 9 8 6 36 36 H 1.08996 * 109.70141 * 353.44316 * 9 8 6 37 37 H 1.09005 * 109.49473 * 185.41364 * 10 9 8 38 38 H 1.09004 * 109.52302 * 65.33379 * 10 9 8 39 39 H 1.08999 * 109.45869 * 301.36274 * 11 10 9 40 40 H 1.09001 * 111.00739 * 324.20702 * 14 12 11 41 41 H 1.08995 * 111.00428 * 88.06557 * 14 12 11 42 42 H 1.09000 * 110.49374 * 278.45162 * 15 14 12 43 43 H 1.09001 * 110.33971 * 156.06340 * 15 14 12 44 44 H 0.97008 * 119.99880 * 7.38461 * 20 19 17 45 45 H 1.09007 * 109.88002 * 120.70549 * 25 16 15 46 46 H 1.08999 * 109.88372 * 241.71051 * 25 16 15 47 47 H 1.09002 * 109.49272 * 58.59727 * 26 11 10 48 48 H 1.09006 * 109.49228 * 178.68570 * 26 11 10 49 49 H 1.09004 * 109.58747 * 246.19736 * 27 8 6 50 50 H 1.08999 * 109.58992 * 6.62343 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.2005 0.0000 4 6 3.5866 1.1546 0.0057 5 6 4.1992 -0.1011 -0.0002 6 6 5.6767 -0.2091 0.0002 7 8 6.3530 0.7107 0.4165 8 7 6.2708 -1.3274 -0.4611 9 6 7.7355 -1.4413 -0.4860 10 6 8.1767 -1.8176 -1.9038 11 6 7.4402 -3.0850 -2.3436 12 6 7.9041 -3.4835 -3.7460 13 1 7.6676 -2.7000 -4.4660 14 6 7.2700 -4.8343 -4.1707 15 6 8.3154 -5.3594 -5.1897 16 7 9.6186 -4.9557 -4.6311 17 6 10.8198 -5.5595 -4.8911 18 1 11.6865 -5.3169 -4.2941 19 6 10.9235 -6.4833 -5.9219 20 7 10.1892 -6.3456 -7.0054 21 14 12.1055 -7.9221 -5.7713 22 1 12.8088 -7.8503 -4.4654 23 1 11.3474 -9.1963 -5.8553 24 1 13.0993 -7.8637 -6.8733 25 6 9.4158 -3.7937 -3.7536 26 6 5.9328 -2.8210 -2.3608 27 6 5.4661 -2.4561 -0.9481 28 7 3.4497 -1.1972 -0.0006 29 7 2.1673 -1.1450 -0.0006 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6743 2.1444 0.0004 34 1 4.1740 2.0609 0.0107 35 1 8.0537 -2.2146 0.2131 36 1 8.1830 -0.4880 -0.2049 37 1 9.2515 -1.9993 -1.9142 38 1 7.9388 -1.0028 -2.5877 39 1 7.6592 -3.8930 -1.6454 40 1 7.1777 -5.5077 -3.3186 41 1 6.3037 -4.6787 -4.6502 42 1 8.1618 -4.8989 -6.1656 43 1 8.2560 -6.4450 -5.2680 44 1 9.6563 -5.5449 -7.1316 45 1 9.7510 -4.0290 -2.7434 46 1 9.9704 -2.9376 -4.1379 47 1 5.7157 -1.9967 -3.0401 48 1 5.4105 -3.7170 -2.6965 49 1 5.5994 -3.3123 -0.2868 50 1 4.4143 -2.1712 -0.9730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039138794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:49 Heat of formation + Delta-G solvation = 29.164511 kcal Electronic energy + Delta-G solvation = -30174.140688 eV Core-core repulsion = 26201.588717 eV Total energy + Delta-G solvation = -3972.551971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.50607 -41.06960 -39.89788 -38.17109 -35.67252 -35.05805 -34.21944 -33.52435 -32.27129 -30.89187 -29.90850 -29.06576 -26.93749 -26.26150 -25.24040 -24.53153 -23.93188 -22.50367 -21.92463 -21.06176 -20.66817 -19.54191 -19.22506 -18.20801 -17.38876 -16.95334 -16.70332 -16.53731 -16.41701 -15.81101 -15.68547 -15.67038 -15.24647 -14.94029 -14.84398 -14.64463 -14.51871 -14.35975 -14.15770 -13.75068 -13.73936 -13.39118 -13.20563 -13.11724 -12.83955 -12.61968 -12.50098 -12.45415 -12.24973 -12.17592 -11.89702 -11.86912 -11.64570 -11.54392 -11.46511 -11.34616 -11.18238 -11.05503 -10.84633 -10.52826 -10.41956 -9.78879 -9.04403 -8.38353 -5.29284 -0.65591 -0.33345 1.42059 1.55903 1.63557 1.70485 1.81095 2.40175 2.63175 2.68225 3.11791 3.21639 3.38813 3.50765 3.57781 3.60636 3.70075 3.76903 3.83505 3.96669 4.01757 4.07864 4.25069 4.33791 4.36114 4.43963 4.49669 4.50986 4.55328 4.63732 4.71375 4.77667 4.79858 4.85714 4.89702 4.91759 4.94029 4.98745 5.01829 5.03531 5.11024 5.13857 5.21250 5.28116 5.31707 5.34799 5.50272 5.53593 5.66391 6.16461 6.28523 6.78998 6.88641 7.42158 7.70643 8.30035 8.94207 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.002110 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.873528 B =13268.948568 C =14032.009782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.084 3.916 3 C -0.102 4.102 4 C -0.071 4.071 5 C 0.000 4.000 6 C 0.571 3.429 7 O -0.565 6.565 8 N -0.585 5.585 9 C 0.113 3.887 10 C -0.123 4.123 11 C -0.065 4.065 12 C -0.076 4.076 13 H 0.070 0.930 14 C -0.111 4.111 15 C 0.144 3.856 16 N -0.628 5.628 17 C -0.350 4.350 18 H 0.059 0.941 19 C -0.079 4.079 20 N -0.939 5.939 21 Si 1.114 2.886 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.290 1.290 25 C 0.139 3.861 26 C -0.121 4.121 27 C 0.084 3.916 28 N -0.218 5.218 29 N -0.277 5.277 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.203 0.797 34 H 0.172 0.828 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.089 0.911 42 H -0.002 1.002 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.031 0.969 46 H 0.006 0.994 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.890 17.093 17.085 33.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.059 4.059 3 C -0.130 4.130 4 C -0.099 4.099 5 C -0.146 4.146 6 C 0.357 3.643 7 O -0.444 6.444 8 N -0.315 5.315 9 C -0.009 4.009 10 C -0.161 4.161 11 C -0.084 4.084 12 C -0.095 4.095 13 H 0.089 0.911 14 C -0.149 4.149 15 C 0.019 3.981 16 N -0.355 5.355 17 C -0.478 4.478 18 H 0.077 0.923 19 C -0.275 4.275 20 N -0.581 5.581 21 Si 0.938 3.062 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.218 1.218 25 C 0.014 3.986 26 C -0.159 4.159 27 C -0.038 4.038 28 N -0.063 5.063 29 N -0.121 5.121 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.220 0.780 34 H 0.189 0.811 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.016 0.984 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.049 0.951 46 H 0.024 0.976 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -21.947 14.500 16.599 31.104 hybrid contribution 0.354 2.750 0.137 2.776 sum -21.594 17.250 16.736 32.310 Atomic orbital electron populations 1.20926 0.84301 1.05741 1.05154 1.23724 1.01097 0.89998 0.91096 1.22818 0.93100 1.01624 0.95492 1.22646 0.96450 0.98229 0.92602 1.22705 0.95347 0.93539 1.02981 1.17919 0.86126 0.82213 0.78042 1.90765 1.64795 1.39470 1.49321 1.48118 1.07799 1.15598 1.60020 1.21724 0.78469 1.03188 0.97494 1.21910 1.00804 0.97596 0.95768 1.21057 0.95268 0.97389 0.94654 1.22061 0.93239 0.96740 0.97493 0.91117 1.22789 0.97334 0.96337 0.98465 1.21501 0.85693 0.96444 0.94467 1.44957 1.03028 1.33467 1.54083 1.20018 0.89112 1.23796 1.14893 0.92329 1.27070 1.04303 1.05126 0.90997 1.70835 1.32076 1.30741 1.24475 0.82920 0.73802 0.73718 0.75772 1.19842 1.21235 1.21752 1.21496 0.95496 0.88164 0.93443 1.21945 0.94953 1.02449 0.96567 1.22801 0.98197 0.88255 0.94552 1.73070 1.00210 1.25474 1.07544 1.73067 1.00773 1.26738 1.11486 0.88039 0.87012 0.90002 0.77998 0.81074 0.89837 0.89476 0.90417 0.92012 0.90589 0.90643 0.89218 0.98384 0.96419 0.93732 0.95063 0.97576 0.92158 0.89224 0.90195 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.19 71.24 0.73 0.38 16 2 C 0.08 0.93 6.87 42.59 0.29 1.22 16 3 C -0.10 -0.80 9.86 22.49 0.22 -0.58 16 4 C -0.07 -0.99 9.73 22.77 0.22 -0.77 16 5 C 0.00 0.00 6.51 41.99 0.27 0.27 16 6 C 0.57 14.22 7.62 86.88 0.66 14.89 16 7 O -0.56 -16.69 16.04 -3.75 -0.06 -16.75 16 8 N -0.59 -13.51 2.97 -822.00 -2.44 -15.95 16 9 C 0.11 2.54 6.43 86.36 0.55 3.09 16 10 C -0.12 -2.92 5.17 30.67 0.16 -2.76 16 11 C -0.06 -1.61 1.52 -10.77 -0.02 -1.63 16 12 C -0.08 -2.47 2.49 -9.61 -0.02 -2.49 16 13 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 14 C -0.11 -3.83 5.61 32.07 0.18 -3.65 16 15 C 0.14 7.03 5.33 86.94 0.46 7.49 16 16 N -0.63 -33.40 3.33 -691.53 -2.30 -35.70 16 17 C -0.35 -20.75 9.98 84.03 0.84 -19.91 16 18 H 0.06 3.47 8.01 -2.91 -0.02 3.45 16 19 C -0.08 -4.71 4.98 84.86 0.42 -4.29 16 20 N -0.94 -59.62 12.80 21.65 0.28 -59.34 16 21 Si 1.11 52.96 30.03 68.60 2.06 55.02 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 C 0.14 5.86 5.83 86.73 0.51 6.36 16 26 C -0.12 -2.56 5.21 30.67 0.16 -2.40 16 27 C 0.08 1.74 6.01 86.36 0.52 2.26 16 28 N -0.22 -4.65 7.63 -48.49 -0.37 -5.02 16 29 N -0.28 -5.22 11.43 -47.53 -0.54 -5.76 16 30 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.11 -0.24 8.09 -2.39 -0.02 -0.26 16 32 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.20 -0.30 8.06 -2.91 -0.02 -0.32 16 34 H 0.17 1.96 7.88 -2.91 -0.02 1.94 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 2.08 7.02 -2.39 -0.02 2.06 16 37 H 0.08 1.94 7.11 -2.38 -0.02 1.92 16 38 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16 40 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 41 H 0.09 2.60 8.09 -2.39 -0.02 2.58 16 42 H 0.00 -0.08 7.02 -2.39 -0.02 -0.10 16 43 H 0.02 0.95 7.79 -2.39 -0.02 0.93 16 44 H 0.25 16.39 6.43 -92.70 -0.60 15.80 16 45 H 0.03 1.29 7.56 -2.38 -0.02 1.27 16 46 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.09 1.77 7.37 -2.38 -0.02 1.75 16 49 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.13 2.79 4.01 -78.76 -0.32 2.48 16 Total: -1.00 -79.41 390.62 3.58 -75.83 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.80 Total: 10.18 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 6.16 Total: -2.51 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -5.38 Total: -121.77 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.06 Total: -16.75 kcal Atomic # 14 Polarization: 52.96 SS G_CDS: 2.06 Total: 55.02 kcal Total: -79.41 3.58 -75.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039138794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.992 kcal (2) G-P(sol) polarization free energy of solvation -79.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds