Wall clock time and date at job start Wed Apr 1 2020 03:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38568 * 119.96867 * 2 1 4 4 C 1.38823 * 118.06920 * 179.76937 * 3 2 1 5 5 C 1.39713 * 117.89736 * 0.44064 * 4 3 2 6 6 C 1.48156 * 120.18160 * 179.80921 * 5 4 3 7 7 O 1.21512 * 120.00157 * 18.54161 * 6 5 4 8 8 N 1.34774 * 119.99945 * 198.55082 * 6 5 4 9 9 C 1.46926 * 120.63240 * 8.80549 * 8 6 5 10 10 C 1.53185 * 108.77906 * 233.63236 * 9 8 6 11 11 C 1.53040 * 109.31739 * 305.36746 * 10 9 8 12 12 C 1.53036 * 109.53585 * 61.36217 * 11 10 9 13 13 C 1.46933 * 120.63282 * 188.83420 * 8 6 5 14 14 H 1.08995 * 109.58744 * 246.15543 * 13 8 6 15 15 C 1.53004 * 109.58119 * 6.43643 * 13 8 6 16 16 H 1.08998 * 110.64350 * 305.51146 * 15 13 8 17 17 C 1.55155 * 110.71959 * 68.65706 * 15 13 8 18 18 C 1.55125 * 101.48491 * 153.73174 * 17 15 13 19 19 N 1.47433 * 104.94244 * 323.22146 * 18 17 15 20 20 C 1.36936 * 125.64858 * 204.03817 * 19 18 17 21 21 H 1.07997 * 119.99702 * 179.97438 * 20 19 18 22 22 C 1.38809 * 119.99883 * 359.95903 * 20 19 18 23 23 N 1.31617 * 120.00152 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46963 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46952 * 120.00107 * 24 22 20 27 27 H 1.48493 * 109.47253 * 240.00285 * 24 22 20 28 28 C 1.47026 * 108.70082 * 24.00451 * 19 18 17 29 29 N 1.32778 * 119.63716 * 359.52526 * 5 4 3 30 30 N 1.28353 * 122.03040 * 0.26017 * 29 5 4 31 31 H 1.08998 * 109.47504 * 270.02524 * 1 2 3 32 32 H 1.09005 * 109.47092 * 30.02461 * 1 2 3 33 33 H 1.09004 * 109.47288 * 150.02680 * 1 2 3 34 34 H 1.08001 * 120.96345 * 0.02562 * 3 2 1 35 35 H 1.07998 * 121.04792 * 180.24211 * 4 3 2 36 36 H 1.09001 * 109.58689 * 353.42524 * 9 8 6 37 37 H 1.09000 * 109.58373 * 113.70410 * 9 8 6 38 38 H 1.09002 * 109.49961 * 65.31921 * 10 9 8 39 39 H 1.08998 * 109.49836 * 185.37797 * 10 9 8 40 40 H 1.09000 * 109.46249 * 181.38476 * 11 10 9 41 41 H 1.09005 * 109.45680 * 301.35660 * 11 10 9 42 42 H 1.09000 * 109.49648 * 178.68736 * 12 11 10 43 43 H 1.08998 * 109.50052 * 58.59062 * 12 11 10 44 44 H 1.08996 * 111.00831 * 271.93729 * 17 15 13 45 45 H 1.09007 * 111.00743 * 35.79097 * 17 15 13 46 46 H 1.09000 * 110.42039 * 204.29504 * 18 17 15 47 47 H 1.08999 * 110.20820 * 82.03966 * 18 17 15 48 48 H 0.97005 * 120.00104 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.87944 * 239.51923 * 28 19 18 50 50 H 1.08992 * 109.88157 * 118.36125 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5867 1.1544 0.0049 5 6 4.1991 -0.1013 0.0001 6 6 5.6767 -0.2094 0.0007 7 8 6.3552 0.7399 0.3399 8 7 6.2684 -1.3606 -0.3750 9 6 5.4795 -2.4487 -0.9687 10 6 5.7387 -3.7343 -0.1771 11 6 7.2444 -4.0039 -0.1283 12 6 7.9485 -2.8473 0.5848 13 6 7.7144 -1.5516 -0.1982 14 1 8.1957 -1.6220 -1.1736 15 6 8.2970 -0.3680 0.5769 16 1 8.0448 0.5730 0.0881 17 6 7.7979 -0.3747 2.0459 18 6 8.9478 0.3771 2.7663 19 7 10.1771 -0.0622 2.0811 20 6 11.4368 -0.0527 2.6178 21 1 12.2760 -0.3969 2.0317 22 6 11.6351 0.3996 3.9151 23 7 10.6122 0.8189 4.6294 24 14 13.3535 0.4119 4.6475 25 1 14.3216 -0.1058 3.6474 26 1 13.7228 1.8011 5.0202 27 1 13.3823 -0.4493 5.8568 28 6 9.8262 -0.5128 0.7263 29 7 3.4497 -1.1974 0.0006 30 7 2.1672 -1.1451 0.0006 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6745 2.1444 0.0004 35 1 4.1740 2.0607 0.0091 36 1 4.4195 -2.1987 -0.9227 37 1 5.7767 -2.5906 -2.0077 38 1 5.3565 -3.6204 0.8373 39 1 5.2347 -4.5692 -0.6640 40 1 7.4299 -4.9314 0.4134 41 1 7.6304 -4.0930 -1.1439 42 1 9.0179 -3.0509 0.6398 43 1 7.5456 -2.7416 1.5920 44 1 6.8553 0.1643 2.1408 45 1 7.7031 -1.3935 2.4218 46 1 8.9814 0.1006 3.8201 47 1 8.8183 1.4541 2.6598 48 1 10.7509 1.1354 5.5358 49 1 10.1143 -1.5560 0.5964 50 1 10.3314 0.1082 -0.0134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039200408.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:11 Heat of formation + Delta-G solvation = 92.460814 kcal Electronic energy + Delta-G solvation = -31658.902273 eV Core-core repulsion = 27689.095035 eV Total energy + Delta-G solvation = -3969.807238 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.67238 -40.35941 -37.53275 -36.74900 -34.56803 -33.45709 -32.81007 -32.69492 -30.85988 -28.86101 -28.74639 -27.35847 -25.73102 -24.73141 -24.24364 -23.73487 -22.73242 -21.26161 -20.40229 -19.61986 -19.06764 -17.77088 -17.22000 -16.72058 -16.17595 -15.89777 -15.43866 -15.17102 -15.01574 -14.73152 -14.45991 -14.32775 -13.83624 -13.78685 -13.66071 -13.47661 -13.25831 -13.03244 -12.80246 -12.61518 -12.38927 -12.05359 -11.89212 -11.54834 -11.28406 -11.03210 -10.97685 -10.82385 -10.75253 -10.61869 -10.49809 -10.42527 -10.15536 -10.06439 -9.94612 -9.75473 -9.59400 -9.57049 -9.26990 -8.71027 -8.49505 -8.31743 -6.64944 -5.50895 -2.91947 0.18563 0.43060 2.50809 2.87376 3.34154 3.46533 3.51442 3.54297 3.58257 4.00308 4.15854 4.30120 4.55084 4.60299 4.61346 4.92335 4.99091 5.02826 5.03667 5.08348 5.21104 5.31358 5.42203 5.43075 5.47495 5.55038 5.62480 5.63164 5.74854 5.80224 5.83527 6.00560 6.03670 6.06868 6.09235 6.21540 6.23542 6.27577 6.40441 6.56237 6.65273 6.76779 6.90775 6.98629 7.07273 7.34777 7.47284 7.74043 7.82275 8.04239 8.13462 8.30128 8.52791 9.37055 9.98649 10.66331 11.52194 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.003029 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.223245 B = 9241.082394 C =10343.035987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.080 3.920 3 C -0.122 4.122 4 C -0.062 4.062 5 C 0.024 3.976 6 C 0.567 3.433 7 O -0.495 6.495 8 N -0.583 5.583 9 C 0.077 3.923 10 C -0.125 4.125 11 C -0.121 4.121 12 C -0.136 4.136 13 C 0.160 3.840 14 H 0.070 0.930 15 C -0.109 4.109 16 H 0.116 0.884 17 C -0.136 4.136 18 C 0.158 3.842 19 N -0.603 5.603 20 C -0.216 4.216 21 H 0.076 0.924 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.137 3.863 29 N -0.200 5.200 30 N -0.250 5.250 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.131 0.869 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.008 0.992 48 H 0.249 0.751 49 H 0.020 0.980 50 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.858 -4.285 -13.498 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.063 4.063 3 C -0.151 4.151 4 C -0.091 4.091 5 C -0.121 4.121 6 C 0.351 3.649 7 O -0.369 6.369 8 N -0.315 5.315 9 C -0.046 4.046 10 C -0.164 4.164 11 C -0.159 4.159 12 C -0.174 4.174 13 C 0.058 3.942 14 H 0.088 0.912 15 C -0.128 4.128 16 H 0.134 0.866 17 C -0.175 4.175 18 C 0.033 3.967 19 N -0.328 5.328 20 C -0.345 4.345 21 H 0.093 0.907 22 C -0.210 4.210 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C 0.010 3.990 29 N -0.046 5.046 30 N -0.094 5.094 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.148 0.852 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.117 0.883 47 H 0.026 0.974 48 H 0.060 0.940 49 H 0.038 0.962 50 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -21.396 -5.356 -13.128 25.668 hybrid contribution 1.033 1.515 0.397 1.876 sum -20.364 -3.841 -12.731 24.321 Atomic orbital electron populations 1.20737 0.87162 1.04263 1.03939 1.23039 0.99264 0.90505 0.93503 1.22323 0.94284 1.00160 0.98325 1.22475 0.95070 0.99275 0.92311 1.23168 0.97064 0.91903 0.99983 1.17643 0.84659 0.83742 0.78823 1.90837 1.61285 1.37943 1.46832 1.47900 1.08972 1.14545 1.60098 1.22662 0.99573 0.86741 0.95628 1.21787 0.96460 0.96769 1.01347 1.21580 0.95199 0.98508 1.00609 1.22140 1.01728 0.93293 1.00253 1.21327 0.77860 0.96274 0.98713 0.91174 1.22918 0.94742 0.97942 0.97157 0.86645 1.23321 0.99684 0.99976 0.94470 1.21866 0.81899 0.94267 0.98659 1.44499 1.04194 1.74756 1.09398 1.19129 0.83901 1.35443 0.96020 0.90653 1.24777 0.97475 1.01769 0.96974 1.69862 1.27718 1.49524 1.09951 0.86035 0.83640 0.77157 0.78926 1.20627 1.21908 1.21897 1.21422 0.92433 0.96432 0.88672 1.73076 0.99302 1.25214 1.06983 1.73104 1.01398 1.24777 1.10085 0.89486 0.90042 0.89702 0.82575 0.81872 0.85233 0.92389 0.91318 0.91187 0.91877 0.92234 0.89998 0.90352 0.91962 0.92833 0.88285 0.97426 0.94029 0.96199 0.96670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.47 10.19 36.01 0.37 -0.11 16 2 C 0.08 0.67 6.87 -82.32 -0.57 0.10 16 3 C -0.12 -0.92 9.86 -39.24 -0.39 -1.30 16 4 C -0.06 -0.64 9.73 -38.81 -0.38 -1.01 16 5 C 0.02 0.31 6.53 -82.83 -0.54 -0.23 16 6 C 0.57 8.65 6.71 -12.19 -0.08 8.57 16 7 O -0.49 -8.91 10.41 5.36 0.06 -8.85 16 8 N -0.58 -8.32 2.96 -166.21 -0.49 -8.81 16 9 C 0.08 0.90 6.12 -3.71 -0.02 0.88 16 10 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 11 C -0.12 -1.42 5.88 -26.69 -0.16 -1.57 16 12 C -0.14 -2.03 4.78 -26.61 -0.13 -2.16 16 13 C 0.16 2.51 2.71 -67.59 -0.18 2.32 16 14 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 15 C -0.11 -2.13 2.06 -88.78 -0.18 -2.32 16 16 H 0.12 2.42 5.58 -53.56 -0.30 2.13 16 17 C -0.14 -2.95 5.47 -24.47 -0.13 -3.08 16 18 C 0.16 4.22 5.89 -2.41 -0.01 4.20 16 19 N -0.60 -16.51 3.40 -169.93 -0.58 -17.09 16 20 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 23 N -0.92 -28.28 10.09 55.49 0.56 -27.72 16 24 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 C 0.14 3.08 6.67 -3.06 -0.02 3.06 16 29 N -0.20 -2.53 7.67 33.32 0.26 -2.27 16 30 N -0.25 -2.84 11.43 33.63 0.38 -2.46 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.20 8.09 -51.93 -0.42 -0.22 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.16 1.51 7.83 -52.49 -0.41 1.10 16 36 H 0.13 1.54 3.90 -116.26 -0.45 1.09 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.30 6.52 -51.93 -0.34 0.96 16 43 H 0.08 1.32 5.67 -51.93 -0.29 1.03 16 44 H 0.06 1.34 5.84 -51.93 -0.30 1.04 16 45 H 0.05 1.15 5.40 -51.92 -0.28 0.87 16 46 H 0.10 2.94 5.87 -51.93 -0.30 2.63 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.02 0.43 6.08 -51.93 -0.32 0.12 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 374.52 15.07 5.64 5.64 Total: -1.00 -34.37 374.52 -9.65 -44.02 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.62 Total: 0.79 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.84 Total: -1.23 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.13 Total: -58.34 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.06 Total: -8.85 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.37 -9.65 -44.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039200408.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.482 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds