Wall clock time and date at job start Wed Apr 1 2020 03:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38568 * 119.96867 * 2 1 4 4 C 1.38823 * 118.06920 * 179.76937 * 3 2 1 5 5 C 1.39713 * 117.89736 * 0.44064 * 4 3 2 6 6 C 1.48156 * 120.18160 * 179.80921 * 5 4 3 7 7 O 1.21512 * 120.00157 * 18.54161 * 6 5 4 8 8 N 1.34774 * 119.99945 * 198.55082 * 6 5 4 9 9 C 1.46926 * 120.63240 * 8.80549 * 8 6 5 10 10 C 1.53185 * 108.77906 * 233.63236 * 9 8 6 11 11 C 1.53040 * 109.31739 * 305.36746 * 10 9 8 12 12 C 1.53036 * 109.53585 * 61.36217 * 11 10 9 13 13 C 1.46933 * 120.63282 * 188.83420 * 8 6 5 14 14 H 1.08995 * 109.58744 * 246.15543 * 13 8 6 15 15 C 1.53004 * 109.58119 * 6.43643 * 13 8 6 16 16 H 1.08998 * 110.64350 * 305.51146 * 15 13 8 17 17 C 1.55155 * 110.71959 * 68.65706 * 15 13 8 18 18 C 1.55125 * 101.48491 * 153.73174 * 17 15 13 19 19 N 1.47433 * 104.94244 * 323.22146 * 18 17 15 20 20 C 1.36936 * 125.64858 * 204.03817 * 19 18 17 21 21 H 1.07997 * 119.99702 * 179.97438 * 20 19 18 22 22 C 1.38809 * 119.99883 * 359.95903 * 20 19 18 23 23 N 1.31617 * 120.00152 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99910 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46963 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46952 * 120.00107 * 24 22 20 27 27 H 1.48493 * 109.47253 * 240.00285 * 24 22 20 28 28 C 1.47026 * 108.70082 * 24.00451 * 19 18 17 29 29 N 1.32778 * 119.63716 * 359.52526 * 5 4 3 30 30 N 1.28353 * 122.03040 * 0.26017 * 29 5 4 31 31 H 1.08998 * 109.47504 * 270.02524 * 1 2 3 32 32 H 1.09005 * 109.47092 * 30.02461 * 1 2 3 33 33 H 1.09004 * 109.47288 * 150.02680 * 1 2 3 34 34 H 1.08001 * 120.96345 * 0.02562 * 3 2 1 35 35 H 1.07998 * 121.04792 * 180.24211 * 4 3 2 36 36 H 1.09001 * 109.58689 * 353.42524 * 9 8 6 37 37 H 1.09000 * 109.58373 * 113.70410 * 9 8 6 38 38 H 1.09002 * 109.49961 * 65.31921 * 10 9 8 39 39 H 1.08998 * 109.49836 * 185.37797 * 10 9 8 40 40 H 1.09000 * 109.46249 * 181.38476 * 11 10 9 41 41 H 1.09005 * 109.45680 * 301.35660 * 11 10 9 42 42 H 1.09000 * 109.49648 * 178.68736 * 12 11 10 43 43 H 1.08998 * 109.50052 * 58.59062 * 12 11 10 44 44 H 1.08996 * 111.00831 * 271.93729 * 17 15 13 45 45 H 1.09007 * 111.00743 * 35.79097 * 17 15 13 46 46 H 1.09000 * 110.42039 * 204.29504 * 18 17 15 47 47 H 1.08999 * 110.20820 * 82.03966 * 18 17 15 48 48 H 0.97005 * 120.00104 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.87944 * 239.51923 * 28 19 18 50 50 H 1.08992 * 109.88157 * 118.36125 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5867 1.1544 0.0049 5 6 4.1991 -0.1013 0.0001 6 6 5.6767 -0.2094 0.0007 7 8 6.3552 0.7399 0.3399 8 7 6.2684 -1.3606 -0.3750 9 6 5.4795 -2.4487 -0.9687 10 6 5.7387 -3.7343 -0.1771 11 6 7.2444 -4.0039 -0.1283 12 6 7.9485 -2.8473 0.5848 13 6 7.7144 -1.5516 -0.1982 14 1 8.1957 -1.6220 -1.1736 15 6 8.2970 -0.3680 0.5769 16 1 8.0448 0.5730 0.0881 17 6 7.7979 -0.3747 2.0459 18 6 8.9478 0.3771 2.7663 19 7 10.1771 -0.0622 2.0811 20 6 11.4368 -0.0527 2.6178 21 1 12.2760 -0.3969 2.0317 22 6 11.6351 0.3996 3.9151 23 7 10.6122 0.8189 4.6294 24 14 13.3535 0.4119 4.6475 25 1 14.3216 -0.1058 3.6474 26 1 13.7228 1.8011 5.0202 27 1 13.3823 -0.4493 5.8568 28 6 9.8262 -0.5128 0.7263 29 7 3.4497 -1.1974 0.0006 30 7 2.1672 -1.1451 0.0006 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5134 34 1 1.6745 2.1444 0.0004 35 1 4.1740 2.0607 0.0091 36 1 4.4195 -2.1987 -0.9227 37 1 5.7767 -2.5906 -2.0077 38 1 5.3565 -3.6204 0.8373 39 1 5.2347 -4.5692 -0.6640 40 1 7.4299 -4.9314 0.4134 41 1 7.6304 -4.0930 -1.1439 42 1 9.0179 -3.0509 0.6398 43 1 7.5456 -2.7416 1.5920 44 1 6.8553 0.1643 2.1408 45 1 7.7031 -1.3935 2.4218 46 1 8.9814 0.1006 3.8201 47 1 8.8183 1.4541 2.6598 48 1 10.7509 1.1354 5.5358 49 1 10.1143 -1.5560 0.5964 50 1 10.3314 0.1082 -0.0134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039200408.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:10 Heat of formation + Delta-G solvation = 70.814501 kcal Electronic energy + Delta-G solvation = -31659.840927 eV Core-core repulsion = 27689.095035 eV Total energy + Delta-G solvation = -3970.745892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.58851 -41.48121 -38.94968 -38.24454 -35.48527 -34.72228 -34.10209 -33.71771 -32.53313 -30.66952 -29.49615 -28.98703 -26.99397 -26.15803 -25.49157 -24.71589 -23.85931 -22.38956 -22.14800 -21.19170 -20.29383 -19.04064 -18.54324 -18.15389 -17.15023 -16.95220 -16.76112 -16.65109 -16.34949 -15.96375 -15.72548 -15.56679 -15.22101 -14.87811 -14.73129 -14.38857 -14.29805 -14.24278 -14.04277 -13.71063 -13.49903 -13.41996 -13.19337 -13.08443 -12.89901 -12.77160 -12.51611 -12.23808 -12.14756 -11.97891 -11.86445 -11.72148 -11.59859 -11.55916 -11.36266 -11.18378 -11.12134 -10.80462 -10.71791 -10.50909 -10.02983 -9.54103 -8.86628 -7.76034 -5.21445 -0.61608 -0.29966 1.43850 1.46311 1.51377 1.56731 1.81335 2.47094 2.49328 2.75653 3.25599 3.32457 3.41780 3.59219 3.69873 3.79767 3.81874 3.89757 3.98047 4.03406 4.09436 4.21252 4.29798 4.33073 4.40089 4.56972 4.58367 4.66352 4.68410 4.74410 4.79241 4.83570 4.91269 4.94374 4.99470 5.03888 5.07951 5.12297 5.18257 5.21987 5.28532 5.30203 5.35911 5.44492 5.50231 5.53745 5.62844 5.80860 5.81322 6.28722 6.34912 7.01259 7.10312 7.46562 7.78730 8.45955 9.26199 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.003029 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.223245 B = 9241.082394 C =10343.035987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.082 3.918 3 C -0.103 4.103 4 C -0.075 4.075 5 C 0.003 3.997 6 C 0.562 3.438 7 O -0.535 6.535 8 N -0.583 5.583 9 C 0.075 3.925 10 C -0.120 4.120 11 C -0.113 4.113 12 C -0.132 4.132 13 C 0.166 3.834 14 H 0.090 0.910 15 C -0.092 4.092 16 H 0.104 0.896 17 C -0.114 4.114 18 C 0.165 3.835 19 N -0.623 5.623 20 C -0.236 4.236 21 H 0.083 0.917 22 C -0.074 4.074 23 N -0.953 5.953 24 Si 0.985 3.015 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.290 1.290 28 C 0.132 3.868 29 N -0.213 5.213 30 N -0.274 5.274 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.200 0.800 35 H 0.166 0.834 36 H 0.133 0.867 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.066 0.934 47 H -0.029 1.029 48 H 0.245 0.755 49 H 0.037 0.963 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.615 -5.336 -15.335 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C -0.132 4.132 4 C -0.103 4.103 5 C -0.143 4.143 6 C 0.348 3.652 7 O -0.413 6.413 8 N -0.314 5.314 9 C -0.047 4.047 10 C -0.158 4.158 11 C -0.151 4.151 12 C -0.170 4.170 13 C 0.063 3.937 14 H 0.108 0.892 15 C -0.110 4.110 16 H 0.122 0.878 17 C -0.152 4.152 18 C 0.040 3.960 19 N -0.349 5.349 20 C -0.365 4.365 21 H 0.101 0.899 22 C -0.266 4.266 23 N -0.603 5.603 24 Si 0.813 3.187 25 H -0.188 1.188 26 H -0.220 1.220 27 H -0.217 1.217 28 C 0.007 3.993 29 N -0.059 5.059 30 N -0.118 5.118 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.104 0.896 34 H 0.217 0.783 35 H 0.183 0.817 36 H 0.149 0.851 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.084 0.916 47 H -0.011 1.011 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -23.175 -6.453 -15.011 28.356 hybrid contribution 1.435 1.888 0.949 2.554 sum -21.740 -4.565 -14.062 26.291 Atomic orbital electron populations 1.20910 0.84166 1.05810 1.05024 1.23708 1.01103 0.89909 0.91363 1.22789 0.92988 1.01715 0.95682 1.22646 0.96561 0.98408 0.92706 1.22862 0.95624 0.93320 1.02505 1.18043 0.85873 0.83348 0.77927 1.90801 1.62518 1.39175 1.48758 1.47993 1.08446 1.15112 1.59830 1.22859 0.99397 0.85969 0.96470 1.21764 0.96171 0.97365 1.00543 1.21543 0.95137 0.97164 1.01251 1.22062 1.01347 0.94385 0.99241 1.21176 0.79002 0.94550 0.98938 0.89234 1.22716 0.92685 0.99605 0.96027 0.87845 1.23064 0.97592 0.99092 0.95484 1.21588 0.84104 0.92683 0.97645 1.44794 1.03864 1.74843 1.11372 1.19555 0.84989 1.35394 0.96545 0.89907 1.25726 1.01704 1.01697 0.97444 1.70133 1.29916 1.50297 1.09944 0.84912 0.78941 0.76816 0.78075 1.18818 1.22024 1.21667 1.21623 0.94502 0.96897 0.86288 1.72988 1.00054 1.25272 1.07557 1.73050 1.00845 1.26561 1.11361 0.88363 0.87061 0.89646 0.78286 0.81653 0.85099 0.90425 0.93160 0.88455 0.90893 0.90331 0.91017 0.92859 0.91985 0.92565 0.91564 1.01105 0.94519 0.94553 0.96771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 10.19 71.24 0.73 0.15 16 2 C 0.08 1.17 6.87 42.59 0.29 1.46 16 3 C -0.10 -1.27 9.86 22.49 0.22 -1.05 16 4 C -0.07 -1.47 9.73 22.77 0.22 -1.25 16 5 C 0.00 0.07 6.53 41.99 0.27 0.34 16 6 C 0.56 17.49 6.71 86.88 0.58 18.08 16 7 O -0.54 -20.13 10.41 -3.75 -0.04 -20.17 16 8 N -0.58 -16.37 2.96 -798.05 -2.36 -18.73 16 9 C 0.07 1.62 6.12 86.36 0.53 2.15 16 10 C -0.12 -2.42 6.08 30.67 0.19 -2.23 16 11 C -0.11 -2.39 5.88 30.62 0.18 -2.21 16 12 C -0.13 -3.86 4.78 30.67 0.15 -3.72 16 13 C 0.17 5.10 2.71 44.98 0.12 5.22 16 14 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.09 -3.69 2.06 -9.60 -0.02 -3.71 16 16 H 0.10 4.52 5.58 -28.21 -0.16 4.36 16 17 C -0.11 -5.20 5.47 32.06 0.18 -5.02 16 18 C 0.17 9.39 5.89 86.93 0.51 9.90 16 19 N -0.62 -35.44 3.40 -691.54 -2.35 -37.79 16 20 C -0.24 -14.17 10.27 84.03 0.86 -13.30 16 21 H 0.08 4.72 7.83 -2.91 -0.02 4.70 16 22 C -0.07 -4.46 5.49 84.86 0.47 -4.00 16 23 N -0.95 -60.98 10.09 21.65 0.22 -60.76 16 24 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 27 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 28 C 0.13 6.08 6.67 86.73 0.58 6.65 16 29 N -0.21 -5.26 7.67 -48.49 -0.37 -5.64 16 30 N -0.27 -5.87 11.43 -47.53 -0.54 -6.41 16 31 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.11 0.01 8.09 -2.38 -0.02 -0.01 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.20 0.64 8.06 -2.91 -0.02 0.62 16 35 H 0.17 3.08 7.83 -2.91 -0.02 3.05 16 36 H 0.13 2.96 3.90 -85.60 -0.33 2.62 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.07 2.22 6.52 -2.39 -0.02 2.21 16 43 H 0.05 1.82 5.67 -2.39 -0.01 1.81 16 44 H 0.06 2.83 5.84 -2.39 -0.01 2.82 16 45 H 0.06 2.52 5.40 -2.38 -0.01 2.51 16 46 H 0.07 4.20 5.87 -2.39 -0.01 4.19 16 47 H -0.03 -1.82 8.14 -2.39 -0.02 -1.84 16 48 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 49 H 0.04 1.56 6.08 -2.39 -0.01 1.55 16 50 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -79.51 374.52 3.13 -76.38 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.49 Total: 15.48 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.06 Total: 7.48 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.41 Total: -129.33 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.04 Total: -20.17 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -79.51 3.13 -76.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039200408.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.198 kcal (2) G-P(sol) polarization free energy of solvation -79.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds