Wall clock time and date at job start Wed Apr 1 2020 03:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31918 * 120.17638 * 2 1 4 4 N 1.28278 * 122.32654 * 180.27422 * 3 2 1 5 5 C 1.31912 * 122.51594 * 359.72887 * 4 3 2 6 6 C 1.38498 * 119.97284 * 359.97438 * 5 4 3 7 7 C 1.39735 * 120.16809 * 179.74174 * 2 1 3 8 8 C 1.48131 * 121.14472 * 0.02562 * 7 2 1 9 9 O 1.21517 * 120.00085 * 304.91357 * 8 7 2 10 10 N 1.34776 * 119.99928 * 124.91920 * 8 7 2 11 11 C 1.46962 * 120.65103 * 5.31015 * 10 8 7 12 12 C 1.53191 * 108.88734 * 233.53239 * 11 10 8 13 13 C 1.53039 * 109.31464 * 305.44727 * 12 11 10 14 14 C 1.53038 * 109.54105 * 61.36270 * 13 12 11 15 15 C 1.46924 * 120.63046 * 185.49217 * 10 8 7 16 16 H 1.09007 * 109.58590 * 246.31741 * 15 10 8 17 17 C 1.52996 * 109.58640 * 6.60166 * 15 10 8 18 18 H 1.08996 * 110.89117 * 305.07148 * 17 15 10 19 19 C 1.55157 * 111.03445 * 68.97735 * 17 15 10 20 20 C 1.54340 * 103.01963 * 153.39290 * 19 17 15 21 21 N 1.47014 * 107.26691 * 338.14145 * 20 19 17 22 22 C 1.36936 * 125.64992 * 178.85198 * 21 20 19 23 23 H 1.08003 * 120.00081 * 174.80162 * 22 21 20 24 24 C 1.38813 * 119.99862 * 354.79915 * 22 21 20 25 25 N 1.31623 * 119.99835 * 214.26832 * 24 22 21 26 26 Si 1.86799 * 120.00065 * 34.26413 * 24 22 21 27 27 H 1.48494 * 109.47070 * 174.15404 * 26 24 22 28 28 H 1.48506 * 109.46795 * 54.15903 * 26 24 22 29 29 H 1.48494 * 109.47078 * 294.16224 * 26 24 22 30 30 C 1.47433 * 108.70362 * 358.58244 * 21 20 19 31 31 H 1.09006 * 109.46934 * 275.06775 * 1 2 3 32 32 H 1.09000 * 109.46876 * 35.06450 * 1 2 3 33 33 H 1.08997 * 109.47291 * 155.06698 * 1 2 3 34 34 H 1.08005 * 120.01617 * 180.02562 * 5 4 3 35 35 H 1.07996 * 121.09587 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46846 * 113.75476 * 11 10 8 37 37 H 1.09000 * 109.59832 * 353.39802 * 11 10 8 38 38 H 1.08994 * 109.49988 * 185.49037 * 12 11 10 39 39 H 1.09008 * 109.49663 * 65.39841 * 12 11 10 40 40 H 1.09002 * 109.46147 * 301.34132 * 13 12 11 41 41 H 1.09004 * 109.45130 * 181.37702 * 13 12 11 42 42 H 1.08999 * 109.50104 * 178.68405 * 14 13 12 43 43 H 1.09007 * 109.52456 * 58.59738 * 14 13 12 44 44 H 1.08999 * 110.72216 * 271.94586 * 19 17 15 45 45 H 1.09001 * 110.72357 * 35.04918 * 19 17 15 46 46 H 1.08998 * 109.99046 * 218.66184 * 20 19 17 47 47 H 1.09002 * 109.77901 * 97.49444 * 20 19 17 48 48 H 0.96998 * 120.00407 * 4.99856 * 25 24 22 49 49 H 1.08996 * 110.36387 * 143.19381 * 30 21 20 50 50 H 1.08997 * 110.36325 * 265.51800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1404 0.0000 4 7 3.4520 1.1885 -0.0052 5 6 4.2023 0.1036 -0.0056 6 6 3.6091 -1.1479 0.0002 7 6 2.2093 -1.2081 0.0054 8 6 1.4982 -2.5076 0.0107 9 8 0.6778 -2.7478 0.8744 10 7 1.7612 -3.4235 -0.9423 11 6 2.8312 -3.1972 -1.9240 12 6 2.2533 -3.3591 -3.3335 13 6 1.5737 -4.7256 -3.4481 14 6 0.4238 -4.8113 -2.4418 15 6 0.9810 -4.6659 -1.0222 16 1 1.6234 -5.5162 -0.7929 17 6 -0.1744 -4.6112 -0.0208 18 1 0.1925 -4.4085 0.9853 19 6 -1.2331 -3.5608 -0.4487 20 6 -2.5322 -4.0965 0.1895 21 7 -2.3395 -5.5339 0.4306 22 6 -3.2527 -6.3760 1.0068 23 1 -3.0494 -7.4351 1.0646 24 6 -4.4397 -5.8683 1.5168 25 7 -4.9813 -6.4103 2.5870 26 14 -5.2684 -4.4158 0.6844 27 1 -6.5804 -4.1576 1.3302 28 1 -5.4764 -4.7222 -0.7537 29 1 -4.4071 -3.2132 0.8147 30 6 -1.0026 -5.9199 -0.0566 31 1 -0.3633 0.0908 1.0237 32 1 -0.3633 0.8412 -0.5904 33 1 -0.3634 -0.9318 -0.4332 34 1 5.2788 0.1912 -0.0097 35 1 4.2059 -2.0480 -0.0005 36 1 3.6264 -3.9265 -1.7693 37 1 3.2288 -2.1893 -1.8056 38 1 3.0570 -3.2900 -4.0664 39 1 1.5221 -2.5724 -3.5195 40 1 2.2996 -5.5110 -3.2377 41 1 1.1830 -4.8531 -4.4577 42 1 -0.0745 -5.7758 -2.5401 43 1 -0.2906 -4.0112 -2.6359 44 1 -0.9828 -2.5771 -0.0516 45 1 -1.3241 -3.5251 -1.5344 46 1 -3.3713 -3.9437 -0.4892 47 1 -2.7181 -3.5840 1.1334 48 1 -4.5155 -7.1164 3.0617 49 1 -0.5600 -6.6670 0.6021 50 1 -1.0659 -6.3011 -1.0758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039216894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:24 Heat of formation + Delta-G solvation = 92.790555 kcal Electronic energy + Delta-G solvation = -32337.310163 eV Core-core repulsion = 28367.517224 eV Total energy + Delta-G solvation = -3969.792939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.86036 -40.62850 -37.85749 -37.24510 -34.35726 -34.01136 -33.04948 -32.72036 -31.40162 -29.17086 -28.58702 -28.11740 -26.43764 -24.74832 -24.30097 -23.54698 -22.83390 -21.46261 -20.99217 -19.93921 -19.23734 -18.05238 -17.54243 -17.24764 -16.36443 -16.13845 -15.68353 -15.52118 -15.21731 -15.19860 -14.90666 -14.51912 -14.20982 -13.93670 -13.71095 -13.47608 -13.29439 -13.19299 -13.08542 -12.90061 -12.60275 -12.51803 -12.13903 -11.95425 -11.47625 -11.37889 -11.29606 -11.12994 -10.93769 -10.92087 -10.73623 -10.41140 -10.37254 -10.25380 -10.13648 -10.02381 -9.78360 -9.58302 -9.08819 -8.89939 -8.65095 -8.20571 -6.96316 -6.29223 -3.01744 0.11009 0.48279 2.27782 2.58764 3.14481 3.54326 3.61037 3.63775 3.79868 3.85104 3.98710 4.12970 4.34229 4.42346 4.54040 4.62083 4.75436 4.79363 4.85003 4.91890 5.00119 5.08418 5.13389 5.13963 5.15829 5.37570 5.38096 5.41926 5.48485 5.56573 5.59221 5.61974 5.69084 5.71283 5.74626 5.81373 5.86896 5.92487 5.94959 6.16532 6.24139 6.37368 6.47428 6.55783 6.62594 6.81518 6.99681 7.08761 7.14970 7.83724 7.92741 8.31722 8.43060 9.12486 9.72142 10.40479 11.19084 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003863 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.895241 B = 7246.052125 C = 8464.371659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.117 3.883 3 N -0.241 5.241 4 N -0.229 5.229 5 C 0.029 3.971 6 C -0.090 4.090 7 C -0.119 4.119 8 C 0.554 3.446 9 O -0.483 6.483 10 N -0.596 5.596 11 C 0.099 3.901 12 C -0.135 4.135 13 C -0.119 4.119 14 C -0.141 4.141 15 C 0.162 3.838 16 H 0.077 0.923 17 C -0.107 4.107 18 H 0.121 0.879 19 C -0.129 4.129 20 C 0.126 3.874 21 N -0.607 5.607 22 C -0.338 4.338 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.906 5.906 26 Si 1.032 2.968 27 H -0.300 1.300 28 H -0.299 1.299 29 H -0.276 1.276 30 C 0.139 3.861 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.155 0.845 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.057 0.943 46 H 0.018 0.982 47 H 0.041 0.959 48 H 0.263 0.737 49 H 0.039 0.961 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.592 9.615 -12.650 27.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.027 4.027 3 N -0.084 5.084 4 N -0.070 5.070 5 C -0.135 4.135 6 C -0.120 4.120 7 C -0.134 4.134 8 C 0.340 3.660 9 O -0.357 6.357 10 N -0.329 5.329 11 C -0.024 4.024 12 C -0.173 4.173 13 C -0.157 4.157 14 C -0.179 4.179 15 C 0.060 3.940 16 H 0.095 0.905 17 C -0.126 4.126 18 H 0.138 0.862 19 C -0.166 4.166 20 C 0.001 3.999 21 N -0.334 5.334 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.545 5.545 26 Si 0.864 3.136 27 H -0.227 1.227 28 H -0.227 1.227 29 H -0.203 1.203 30 C 0.012 3.988 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.195 0.805 35 H 0.173 0.827 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.058 0.942 50 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 20.656 12.010 -12.079 26.774 hybrid contribution 1.607 -2.678 -0.314 3.139 sum 22.263 9.332 -12.393 27.135 Atomic orbital electron populations 1.20916 0.86505 1.04456 1.04966 1.23061 0.99433 0.88561 0.91663 1.73062 1.01492 1.23946 1.09927 1.72887 0.99609 1.27742 1.06812 1.24270 1.02694 0.89248 0.97309 1.22635 0.93830 1.00469 0.95064 1.21287 0.94879 0.96055 1.01134 1.17967 0.82569 0.82676 0.82813 1.90905 1.31777 1.76764 1.36229 1.48040 1.35245 1.19689 1.29958 1.21984 0.89690 1.02147 0.88590 1.21916 1.00815 0.98727 0.95841 1.21538 0.97936 0.96537 0.99697 1.22209 0.98075 1.04039 0.93550 1.21292 0.92582 0.84256 0.95916 0.90545 1.23060 0.92786 0.96349 1.00418 0.86162 1.23079 0.95392 0.99208 0.98945 1.21779 0.94466 0.86305 0.97315 1.44781 1.12899 1.03907 1.71812 1.19936 1.00512 0.90979 1.35050 0.90490 1.25544 0.96453 1.03039 0.96178 1.70925 1.44330 1.26530 1.12738 0.84459 0.75901 0.77392 0.75839 1.22747 1.22723 1.20301 1.21664 0.86546 0.94251 0.96329 0.88550 0.89543 0.89598 0.80535 0.82704 0.90750 0.89988 0.90716 0.91429 0.91765 0.91538 0.89689 0.90443 0.90321 0.92442 0.96449 0.94100 0.92688 0.94239 0.96568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.56 36.01 0.34 -0.90 16 2 C 0.12 1.38 6.91 -81.99 -0.57 0.82 16 3 N -0.24 -3.06 11.42 33.81 0.39 -2.67 16 4 N -0.23 -2.60 11.48 30.53 0.35 -2.25 16 5 C 0.03 0.22 11.30 -17.42 -0.20 0.02 16 6 C -0.09 -0.68 7.65 -38.78 -0.30 -0.98 16 7 C -0.12 -1.26 4.92 -104.57 -0.51 -1.77 16 8 C 0.55 6.78 5.51 -12.20 -0.07 6.71 16 9 O -0.48 -7.73 10.00 5.35 0.05 -7.67 16 10 N -0.60 -6.13 2.97 -166.19 -0.49 -6.62 16 11 C 0.10 0.67 5.65 -3.69 -0.02 0.65 16 12 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16 13 C -0.12 -0.93 5.88 -26.69 -0.16 -1.08 16 14 C -0.14 -1.53 4.73 -26.61 -0.13 -1.66 16 15 C 0.16 1.95 2.79 -67.60 -0.19 1.76 16 16 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.11 -1.80 2.12 -88.47 -0.19 -1.99 16 18 H 0.12 2.31 5.71 -53.10 -0.30 2.01 16 19 C -0.13 -2.30 5.36 -24.89 -0.13 -2.43 16 20 C 0.13 2.93 4.57 -3.06 -0.01 2.92 16 21 N -0.61 -15.51 3.38 -170.06 -0.57 -16.08 16 22 C -0.34 -10.02 10.39 -15.06 -0.16 -10.18 16 23 H 0.08 2.38 8.06 -52.48 -0.42 1.96 16 24 C -0.01 -0.32 5.43 -17.43 -0.09 -0.41 16 25 N -0.91 -29.07 13.70 55.49 0.76 -28.31 16 26 Si 1.03 27.10 25.14 -169.99 -4.27 22.82 16 27 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 28 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 29 H -0.28 -6.71 5.05 56.52 0.29 -6.42 16 30 C 0.14 2.82 6.61 -2.52 -0.02 2.81 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.04 4.76 -51.93 -0.25 0.79 16 34 H 0.18 0.66 8.06 -52.48 -0.42 0.24 16 35 H 0.16 0.71 7.47 -52.49 -0.39 0.32 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.49 4.70 -51.93 -0.24 0.24 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.00 6.50 -51.93 -0.34 0.67 16 43 H 0.08 0.94 5.66 -51.93 -0.29 0.65 16 44 H 0.08 1.35 3.70 -51.93 -0.19 1.16 16 45 H 0.06 0.93 5.38 -51.93 -0.28 0.65 16 46 H 0.02 0.43 4.94 -51.93 -0.26 0.17 16 47 H 0.04 1.04 6.64 -51.93 -0.34 0.70 16 48 H 0.26 8.34 8.73 -40.82 -0.36 7.98 16 49 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.02 0.32 6.10 -51.93 -0.32 0.00 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -35.78 362.51 -8.01 -43.79 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.13 Total: -1.69 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.55 Total: -6.78 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.43 Total: -55.94 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.05 Total: -7.67 kcal Atomic # 14 Polarization: 27.10 SS G_CDS: -4.27 Total: 22.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.78 -8.01 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039216894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.580 kcal (2) G-P(sol) polarization free energy of solvation -35.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds