Wall clock time and date at job start Wed Apr 1 2020 03:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31918 * 120.17638 * 2 1 4 4 N 1.28278 * 122.32654 * 180.27422 * 3 2 1 5 5 C 1.31912 * 122.51594 * 359.72887 * 4 3 2 6 6 C 1.38498 * 119.97284 * 359.97438 * 5 4 3 7 7 C 1.39735 * 120.16809 * 179.74174 * 2 1 3 8 8 C 1.48131 * 121.14472 * 0.02562 * 7 2 1 9 9 O 1.21517 * 120.00085 * 304.91357 * 8 7 2 10 10 N 1.34776 * 119.99928 * 124.91920 * 8 7 2 11 11 C 1.46962 * 120.65103 * 5.31015 * 10 8 7 12 12 C 1.53191 * 108.88734 * 233.53239 * 11 10 8 13 13 C 1.53039 * 109.31464 * 305.44727 * 12 11 10 14 14 C 1.53038 * 109.54105 * 61.36270 * 13 12 11 15 15 C 1.46924 * 120.63046 * 185.49217 * 10 8 7 16 16 H 1.09007 * 109.58590 * 246.31741 * 15 10 8 17 17 C 1.52996 * 109.58640 * 6.60166 * 15 10 8 18 18 H 1.08996 * 110.89117 * 305.07148 * 17 15 10 19 19 C 1.55157 * 111.03445 * 68.97735 * 17 15 10 20 20 C 1.54340 * 103.01963 * 153.39290 * 19 17 15 21 21 N 1.47014 * 107.26691 * 338.14145 * 20 19 17 22 22 C 1.36936 * 125.64992 * 178.85198 * 21 20 19 23 23 H 1.08003 * 120.00081 * 174.80162 * 22 21 20 24 24 C 1.38813 * 119.99862 * 354.79915 * 22 21 20 25 25 N 1.31623 * 119.99835 * 214.26832 * 24 22 21 26 26 Si 1.86799 * 120.00065 * 34.26413 * 24 22 21 27 27 H 1.48494 * 109.47070 * 174.15404 * 26 24 22 28 28 H 1.48506 * 109.46795 * 54.15903 * 26 24 22 29 29 H 1.48494 * 109.47078 * 294.16224 * 26 24 22 30 30 C 1.47433 * 108.70362 * 358.58244 * 21 20 19 31 31 H 1.09006 * 109.46934 * 275.06775 * 1 2 3 32 32 H 1.09000 * 109.46876 * 35.06450 * 1 2 3 33 33 H 1.08997 * 109.47291 * 155.06698 * 1 2 3 34 34 H 1.08005 * 120.01617 * 180.02562 * 5 4 3 35 35 H 1.07996 * 121.09587 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.46846 * 113.75476 * 11 10 8 37 37 H 1.09000 * 109.59832 * 353.39802 * 11 10 8 38 38 H 1.08994 * 109.49988 * 185.49037 * 12 11 10 39 39 H 1.09008 * 109.49663 * 65.39841 * 12 11 10 40 40 H 1.09002 * 109.46147 * 301.34132 * 13 12 11 41 41 H 1.09004 * 109.45130 * 181.37702 * 13 12 11 42 42 H 1.08999 * 109.50104 * 178.68405 * 14 13 12 43 43 H 1.09007 * 109.52456 * 58.59738 * 14 13 12 44 44 H 1.08999 * 110.72216 * 271.94586 * 19 17 15 45 45 H 1.09001 * 110.72357 * 35.04918 * 19 17 15 46 46 H 1.08998 * 109.99046 * 218.66184 * 20 19 17 47 47 H 1.09002 * 109.77901 * 97.49444 * 20 19 17 48 48 H 0.96998 * 120.00407 * 4.99856 * 25 24 22 49 49 H 1.08996 * 110.36387 * 143.19381 * 30 21 20 50 50 H 1.08997 * 110.36325 * 265.51800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1404 0.0000 4 7 3.4520 1.1885 -0.0052 5 6 4.2023 0.1036 -0.0056 6 6 3.6091 -1.1479 0.0002 7 6 2.2093 -1.2081 0.0054 8 6 1.4982 -2.5076 0.0107 9 8 0.6778 -2.7478 0.8744 10 7 1.7612 -3.4235 -0.9423 11 6 2.8312 -3.1972 -1.9240 12 6 2.2533 -3.3591 -3.3335 13 6 1.5737 -4.7256 -3.4481 14 6 0.4238 -4.8113 -2.4418 15 6 0.9810 -4.6659 -1.0222 16 1 1.6234 -5.5162 -0.7929 17 6 -0.1744 -4.6112 -0.0208 18 1 0.1925 -4.4085 0.9853 19 6 -1.2331 -3.5608 -0.4487 20 6 -2.5322 -4.0965 0.1895 21 7 -2.3395 -5.5339 0.4306 22 6 -3.2527 -6.3760 1.0068 23 1 -3.0494 -7.4351 1.0646 24 6 -4.4397 -5.8683 1.5168 25 7 -4.9813 -6.4103 2.5870 26 14 -5.2684 -4.4158 0.6844 27 1 -6.5804 -4.1576 1.3302 28 1 -5.4764 -4.7222 -0.7537 29 1 -4.4071 -3.2132 0.8147 30 6 -1.0026 -5.9199 -0.0566 31 1 -0.3633 0.0908 1.0237 32 1 -0.3633 0.8412 -0.5904 33 1 -0.3634 -0.9318 -0.4332 34 1 5.2788 0.1912 -0.0097 35 1 4.2059 -2.0480 -0.0005 36 1 3.6264 -3.9265 -1.7693 37 1 3.2288 -2.1893 -1.8056 38 1 3.0570 -3.2900 -4.0664 39 1 1.5221 -2.5724 -3.5195 40 1 2.2996 -5.5110 -3.2377 41 1 1.1830 -4.8531 -4.4577 42 1 -0.0745 -5.7758 -2.5401 43 1 -0.2906 -4.0112 -2.6359 44 1 -0.9828 -2.5771 -0.0516 45 1 -1.3241 -3.5251 -1.5344 46 1 -3.3713 -3.9437 -0.4892 47 1 -2.7181 -3.5840 1.1334 48 1 -4.5155 -7.1164 3.0617 49 1 -0.5600 -6.6670 0.6021 50 1 -1.0659 -6.3011 -1.0758 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039216894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:23 Heat of formation + Delta-G solvation = 67.402355 kcal Electronic energy + Delta-G solvation = -32338.411078 eV Core-core repulsion = 28367.517224 eV Total energy + Delta-G solvation = -3970.893854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.68296 -41.53906 -39.13649 -38.37370 -35.47211 -34.84073 -34.51506 -33.56863 -32.90166 -30.78685 -29.50506 -29.40862 -27.41074 -25.90691 -25.38348 -24.62191 -23.88811 -22.66519 -22.20566 -21.33604 -20.22356 -19.51779 -18.78159 -18.25745 -17.41183 -16.94643 -16.88298 -16.73917 -16.47774 -16.00807 -15.81720 -15.52687 -15.35124 -15.08569 -14.95900 -14.73306 -14.52163 -14.39410 -14.12340 -13.96604 -13.91024 -13.41379 -13.36072 -13.21308 -12.98952 -12.77244 -12.40461 -12.20607 -12.04767 -11.92577 -11.90272 -11.83823 -11.63709 -11.47327 -11.35707 -11.07614 -10.90698 -10.87684 -10.81482 -10.52990 -10.06674 -9.58630 -9.10636 -8.70098 -5.34756 -0.61439 -0.20063 1.39105 1.41953 1.46835 1.68604 1.76420 2.41159 2.55502 2.89869 2.91625 3.11157 3.28520 3.41667 3.53888 3.67349 3.77801 3.82743 3.87419 3.98878 4.10819 4.11644 4.16476 4.20562 4.33686 4.35251 4.42272 4.46944 4.51758 4.54333 4.60351 4.65971 4.78089 4.78858 4.87130 4.89317 4.90816 4.96508 5.07728 5.08266 5.16325 5.17654 5.24532 5.26240 5.35039 5.44601 5.50144 5.60130 5.73690 6.09611 6.27376 6.82239 7.01950 7.52075 7.58503 8.18229 8.79385 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.003863 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.895241 B = 7246.052125 C = 8464.371659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.104 3.896 3 N -0.271 5.271 4 N -0.259 5.259 5 C 0.042 3.958 6 C -0.069 4.069 7 C -0.132 4.132 8 C 0.555 3.445 9 O -0.531 6.531 10 N -0.588 5.588 11 C 0.094 3.906 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.139 4.139 15 C 0.169 3.831 16 H 0.093 0.907 17 C -0.090 4.090 18 H 0.098 0.902 19 C -0.115 4.115 20 C 0.120 3.880 21 N -0.629 5.629 22 C -0.332 4.332 23 H 0.050 0.950 24 C -0.066 4.066 25 N -0.941 5.941 26 Si 1.075 2.925 27 H -0.306 1.306 28 H -0.285 1.285 29 H -0.251 1.251 30 C 0.133 3.867 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.222 0.778 35 H 0.194 0.806 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.016 0.984 47 H 0.013 0.987 48 H 0.251 0.749 49 H 0.027 0.973 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.682 10.733 -15.560 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.041 4.041 3 N -0.113 5.113 4 N -0.099 5.099 5 C -0.123 4.123 6 C -0.098 4.098 7 C -0.146 4.146 8 C 0.342 3.658 9 O -0.409 6.409 10 N -0.320 5.320 11 C -0.027 4.027 12 C -0.170 4.170 13 C -0.151 4.151 14 C -0.177 4.177 15 C 0.066 3.934 16 H 0.111 0.889 17 C -0.109 4.109 18 H 0.116 0.884 19 C -0.152 4.152 20 C -0.005 4.005 21 N -0.356 5.356 22 C -0.460 4.460 23 H 0.068 0.932 24 C -0.262 4.262 25 N -0.583 5.583 26 Si 0.901 3.099 27 H -0.235 1.235 28 H -0.212 1.212 29 H -0.176 1.176 30 C 0.007 3.993 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.239 0.761 35 H 0.212 0.788 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.034 0.966 47 H 0.031 0.969 48 H 0.060 0.940 49 H 0.046 0.954 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 24.816 13.151 -15.052 31.864 hybrid contribution 0.504 -3.129 0.593 3.224 sum 25.320 10.022 -14.459 30.832 Atomic orbital electron populations 1.20833 0.87128 1.04255 1.04332 1.23036 0.99366 0.89140 0.92578 1.73008 1.02482 1.24496 1.11315 1.72793 0.99336 1.29792 1.08024 1.24964 1.04364 0.88191 0.94740 1.23078 0.92489 1.01987 0.92264 1.21157 0.96279 0.94520 1.02692 1.18207 0.81984 0.83249 0.82355 1.90889 1.34090 1.77690 1.38220 1.48081 1.35501 1.18401 1.30061 1.22333 0.89046 1.03854 0.87514 1.21918 1.01291 0.97401 0.96360 1.21509 0.96950 0.97849 0.98795 1.22161 0.99140 1.02814 0.93564 1.21107 0.91338 0.85782 0.95130 0.88896 1.22822 0.93765 0.93260 1.01054 0.88440 1.23027 0.92739 0.99660 0.99767 1.21841 0.97404 0.84880 0.96326 1.44900 1.14064 1.04598 1.72064 1.19882 1.01324 0.90515 1.34314 0.93177 1.26741 0.97558 1.05641 0.96268 1.71025 1.45017 1.27784 1.14482 0.83910 0.74849 0.75799 0.75299 1.23451 1.21166 1.17566 1.21908 0.84676 0.96132 0.96557 0.89742 0.88595 0.90560 0.76133 0.78849 0.87808 0.88724 0.87937 0.92730 0.90238 0.90898 0.90793 0.91827 0.89435 0.90361 0.96614 0.96945 0.94047 0.95435 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.46 9.56 71.24 0.68 -1.78 16 2 C 0.10 2.36 6.91 42.91 0.30 2.66 16 3 N -0.27 -6.62 11.42 -46.94 -0.54 -7.15 16 4 N -0.26 -5.30 11.48 -57.34 -0.66 -5.96 16 5 C 0.04 0.46 11.30 84.74 0.96 1.42 16 6 C -0.07 -0.73 7.65 22.79 0.17 -0.56 16 7 C -0.13 -2.48 4.92 -19.83 -0.10 -2.58 16 8 C 0.56 12.52 5.51 86.87 0.48 13.00 16 9 O -0.53 -16.90 10.00 -3.77 -0.04 -16.93 16 10 N -0.59 -10.16 2.97 -797.99 -2.37 -12.53 16 11 C 0.09 0.78 5.65 86.36 0.49 1.27 16 12 C -0.13 -1.11 6.08 30.67 0.19 -0.92 16 13 C -0.11 -1.27 5.88 30.62 0.18 -1.09 16 14 C -0.14 -2.62 4.73 30.67 0.14 -2.48 16 15 C 0.17 3.65 2.79 44.97 0.13 3.77 16 16 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 17 C -0.09 -2.97 2.12 -9.40 -0.02 -2.99 16 18 H 0.10 3.78 5.71 -20.83 -0.12 3.66 16 19 C -0.11 -4.04 5.36 31.79 0.17 -3.86 16 20 C 0.12 5.62 4.57 86.74 0.40 6.02 16 21 N -0.63 -32.85 3.38 -691.96 -2.34 -35.18 16 22 C -0.33 -20.45 10.39 84.03 0.87 -19.58 16 23 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 24 C -0.07 -4.17 5.43 84.86 0.46 -3.71 16 25 N -0.94 -63.00 13.70 21.65 0.30 -62.70 16 26 Si 1.07 56.19 25.14 68.60 1.72 57.91 16 27 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 28 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.25 -11.99 5.05 99.48 0.50 -11.49 16 30 C 0.13 5.41 6.61 86.85 0.57 5.99 16 31 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.85 4.76 -2.39 -0.01 1.84 16 34 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 35 H 0.19 0.52 7.47 -2.91 -0.02 0.50 16 36 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.09 0.60 4.70 -2.39 -0.01 0.59 16 38 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 1.57 6.50 -2.39 -0.02 1.55 16 43 H 0.06 1.38 5.66 -2.38 -0.01 1.37 16 44 H 0.09 3.00 3.70 -2.39 -0.01 2.99 16 45 H 0.08 2.42 5.38 -2.39 -0.01 2.41 16 46 H 0.02 0.77 4.94 -2.39 -0.01 0.75 16 47 H 0.01 0.66 6.64 -2.39 -0.02 0.64 16 48 H 0.25 16.78 8.73 -92.71 -0.81 15.97 16 49 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.04 1.37 6.10 -2.39 -0.01 1.35 16 Total: -1.00 -84.37 362.51 2.78 -81.59 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.63 Total: 6.37 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 6.07 Total: -5.40 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -5.60 Total: -123.53 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.04 Total: -16.93 kcal Atomic # 14 Polarization: 56.19 SS G_CDS: 1.72 Total: 57.91 kcal Total: -84.37 2.78 -81.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039216894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.992 kcal (2) G-P(sol) polarization free energy of solvation -84.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds