Wall clock time and date at job start Wed Apr 1 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31927 * 120.17172 * 2 1 4 4 N 1.28281 * 122.32424 * 179.97438 * 3 2 1 5 5 C 1.31913 * 122.51574 * 0.02562 * 4 3 2 6 6 C 1.38502 * 119.97385 * 359.97438 * 5 4 3 7 7 C 1.39729 * 120.17129 * 179.72445 * 2 1 3 8 8 C 1.48135 * 121.14541 * 359.97438 * 7 2 1 9 9 O 1.21511 * 119.99925 * 47.68719 * 8 7 2 10 10 N 1.34772 * 119.99727 * 227.68527 * 8 7 2 11 11 C 1.46921 * 120.63432 * 6.46261 * 10 8 7 12 12 C 1.53192 * 108.77758 * 126.36942 * 11 10 8 13 13 C 1.53038 * 109.31427 * 54.63241 * 12 11 10 14 14 C 1.53036 * 109.53620 * 298.63726 * 13 12 11 15 15 C 1.46926 * 120.62592 * 186.18031 * 10 8 7 16 16 H 1.08999 * 109.58843 * 113.84761 * 15 10 8 17 17 C 1.53001 * 109.59050 * 353.41914 * 15 10 8 18 18 H 1.09000 * 110.63785 * 313.57223 * 17 15 10 19 19 C 1.55154 * 110.71788 * 76.71121 * 17 15 10 20 20 C 1.55124 * 101.48284 * 153.73541 * 19 17 15 21 21 N 1.47421 * 104.94534 * 323.22245 * 20 19 17 22 22 C 1.36935 * 125.64666 * 204.03650 * 21 20 19 23 23 H 1.08002 * 119.99528 * 162.05236 * 22 21 20 24 24 C 1.38804 * 120.00373 * 342.05524 * 22 21 20 25 25 N 1.31618 * 120.00190 * 159.83153 * 24 22 21 26 26 Si 1.86806 * 119.99971 * 339.82522 * 24 22 21 27 27 H 1.48496 * 109.46808 * 84.65833 * 26 24 22 28 28 H 1.48500 * 109.47216 * 204.65494 * 26 24 22 29 29 H 1.48496 * 109.47151 * 324.65958 * 26 24 22 30 30 C 1.47022 * 108.70057 * 24.00580 * 21 20 19 31 31 H 1.09001 * 109.46926 * 89.42113 * 1 2 3 32 32 H 1.08997 * 109.46830 * 209.42020 * 1 2 3 33 33 H 1.08998 * 109.47058 * 329.42193 * 1 2 3 34 34 H 1.08002 * 120.01511 * 180.02562 * 5 4 3 35 35 H 1.07997 * 121.09157 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.58550 * 246.15387 * 11 10 8 37 37 H 1.08998 * 109.58730 * 6.57646 * 11 10 8 38 38 H 1.09002 * 109.49502 * 174.58770 * 12 11 10 39 39 H 1.09006 * 109.49268 * 294.64881 * 12 11 10 40 40 H 1.08998 * 109.45740 * 58.65782 * 13 12 11 41 41 H 1.09000 * 109.45557 * 178.61417 * 13 12 11 42 42 H 1.09005 * 109.49840 * 181.31805 * 14 13 12 43 43 H 1.09002 * 109.49900 * 301.38028 * 14 13 12 44 44 H 1.09002 * 111.00337 * 271.93920 * 19 17 15 45 45 H 1.09001 * 111.00711 * 35.79605 * 19 17 15 46 46 H 1.09007 * 110.41943 * 204.29175 * 20 19 17 47 47 H 1.09004 * 110.20615 * 82.04818 * 20 19 17 48 48 H 0.97007 * 120.00472 * 180.02562 * 25 24 22 49 49 H 1.09002 * 109.87679 * 239.52470 * 30 21 20 50 50 H 1.08998 * 109.88611 * 118.36248 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 0.0005 5 6 4.2023 0.1038 0.0005 6 6 3.6091 -1.1478 0.0006 7 6 2.2093 -1.2080 0.0058 8 6 1.4983 -2.5075 0.0126 9 8 0.5849 -2.7044 -0.7642 10 7 1.8645 -3.4714 0.8804 11 6 2.8689 -3.2021 1.9183 12 6 2.2835 -3.5831 3.2818 13 6 1.7993 -5.0342 3.2371 14 6 0.6990 -5.1743 2.1828 15 6 1.2624 -4.8098 0.8104 16 1 2.0219 -5.5378 0.5253 17 6 0.1333 -4.8110 -0.2221 18 1 -0.5112 -3.9423 -0.0877 19 6 0.7073 -4.8509 -1.6631 20 6 -0.4567 -5.5192 -2.4408 21 7 -1.0096 -6.5207 -1.5110 22 6 -1.7092 -7.6419 -1.8694 23 1 -1.8235 -8.4545 -1.1672 24 6 -2.2714 -7.7342 -3.1351 25 7 -2.5881 -8.9118 -3.6304 26 14 -2.5789 -6.1869 -4.1356 27 1 -1.3387 -5.8122 -4.8614 28 1 -3.6679 -6.4379 -5.1135 29 1 -2.9743 -5.0806 -3.2274 30 6 -0.6848 -6.1166 -0.1352 31 1 -0.3633 0.0104 -1.0276 32 1 -0.3633 -0.8951 0.5048 33 1 -0.3633 0.8847 0.5228 34 1 5.2788 0.1914 0.0014 35 1 4.2060 -2.0478 0.0002 36 1 3.7621 -3.7963 1.7253 37 1 3.1244 -2.1425 1.9135 38 1 3.0507 -3.4789 4.0490 39 1 1.4452 -2.9262 3.5140 40 1 2.6333 -5.6875 2.9808 41 1 1.4048 -5.3154 4.2135 42 1 0.3383 -6.2028 2.1678 43 1 -0.1250 -4.5033 2.4255 44 1 0.9020 -3.8446 -2.0341 45 1 1.6080 -5.4632 -1.7081 46 1 -0.0825 -6.0043 -3.3424 47 1 -1.2144 -4.7779 -2.6946 48 1 -2.9806 -8.9763 -4.5151 49 1 -0.0931 -6.8933 0.3493 50 1 -1.6025 -5.9423 0.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039216896.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:28 Heat of formation + Delta-G solvation = 85.325148 kcal Electronic energy + Delta-G solvation = -32029.555026 eV Core-core repulsion = 28059.438363 eV Total energy + Delta-G solvation = -3970.116663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.85120 -40.62143 -37.81040 -37.32919 -34.37852 -34.03496 -33.03058 -32.64872 -31.46480 -29.45736 -28.66130 -27.84271 -26.47136 -24.77039 -24.52212 -23.53516 -22.69733 -21.71194 -20.53070 -19.93490 -19.76166 -18.14194 -17.43848 -16.81868 -16.37529 -16.27294 -15.80338 -15.62378 -15.09563 -14.95475 -14.83933 -14.49443 -14.23763 -13.93780 -13.71609 -13.53440 -13.28178 -13.23200 -13.12060 -12.83963 -12.64419 -12.54882 -12.13446 -11.68869 -11.62217 -11.50017 -11.36296 -11.24627 -11.10593 -10.88722 -10.77230 -10.50622 -10.37150 -10.29012 -10.16757 -10.08153 -9.83655 -9.73937 -9.31109 -8.99819 -8.68502 -8.60402 -6.91815 -5.86024 -3.15848 0.06560 0.46597 2.31546 2.56786 3.14052 3.43382 3.55409 3.59755 3.61804 3.85770 3.97895 4.11145 4.32625 4.41560 4.54139 4.60797 4.63621 4.77317 4.83066 4.93428 5.00456 5.09172 5.12583 5.14205 5.20128 5.35633 5.37037 5.37374 5.51662 5.55039 5.56744 5.64497 5.68603 5.69558 5.79138 5.80574 5.87021 5.91297 6.00013 6.12552 6.22560 6.27651 6.49679 6.62185 6.69311 6.79264 6.95498 7.04701 7.09193 7.82423 7.91730 8.29311 8.39527 8.93164 9.78574 10.30068 11.30539 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003704 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.095023 B = 7558.139594 C = 8994.628799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.117 3.883 3 N -0.243 5.243 4 N -0.228 5.228 5 C 0.028 3.972 6 C -0.087 4.087 7 C -0.121 4.121 8 C 0.546 3.454 9 O -0.480 6.480 10 N -0.596 5.596 11 C 0.102 3.898 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.134 4.134 15 C 0.161 3.839 16 H 0.077 0.923 17 C -0.095 4.095 18 H 0.106 0.894 19 C -0.122 4.122 20 C 0.110 3.890 21 N -0.611 5.611 22 C -0.237 4.237 23 H 0.091 0.909 24 C 0.018 3.982 25 N -0.915 5.915 26 Si 0.888 3.112 27 H -0.287 1.287 28 H -0.305 1.305 29 H -0.275 1.275 30 C 0.139 3.861 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.178 0.822 35 H 0.156 0.844 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.027 0.973 48 H 0.262 0.738 49 H 0.028 0.972 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.032 16.048 15.273 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.028 4.028 3 N -0.086 5.086 4 N -0.070 5.070 5 C -0.136 4.136 6 C -0.116 4.116 7 C -0.135 4.135 8 C 0.333 3.667 9 O -0.354 6.354 10 N -0.330 5.330 11 C -0.021 4.021 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.172 4.172 15 C 0.059 3.941 16 H 0.095 0.905 17 C -0.114 4.114 18 H 0.124 0.876 19 C -0.160 4.160 20 C -0.015 4.015 21 N -0.337 5.337 22 C -0.364 4.364 23 H 0.108 0.892 24 C -0.180 4.180 25 N -0.560 5.560 26 Si 0.719 3.281 27 H -0.214 1.214 28 H -0.233 1.233 29 H -0.201 1.201 30 C 0.013 3.987 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.195 0.805 35 H 0.173 0.827 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.071 0.929 49 H 0.045 0.955 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 15.345 17.411 14.707 27.476 hybrid contribution 0.103 -0.879 -0.646 1.095 sum 15.448 16.532 14.061 26.640 Atomic orbital electron populations 1.20780 0.86512 1.04045 1.04784 1.23071 0.99464 0.88633 0.91603 1.73068 1.01519 1.23983 1.10079 1.72883 0.99608 1.27781 1.06713 1.24284 1.02722 0.89254 0.97306 1.22697 0.93964 1.00465 0.94489 1.21281 0.94777 0.96031 1.01448 1.17953 0.84381 0.82709 0.81671 1.90897 1.27467 1.78367 1.38708 1.47968 1.41590 1.12023 1.31429 1.21917 0.91149 1.01479 0.87559 1.21919 1.01339 0.97849 0.96156 1.21538 0.98906 0.95813 0.99522 1.21987 0.98285 1.03318 0.93627 1.21363 0.95492 0.81320 0.95900 0.90505 1.22687 0.95906 0.99186 0.93655 0.87593 1.23249 0.97365 1.00295 0.95067 1.22003 0.93663 0.91566 0.94244 1.44798 1.63620 1.25265 1.00067 1.18664 1.26501 0.91597 0.99687 0.89159 1.24962 0.99496 0.96455 0.97041 1.69819 1.46743 1.22073 1.17381 0.86942 0.77056 0.84535 0.79552 1.21419 1.23329 1.20106 1.21456 0.96113 0.93046 0.88107 0.88689 0.89825 0.89866 0.80534 0.82678 0.90833 0.90200 0.90685 0.91433 0.91630 0.91451 0.89547 0.91283 0.89156 0.92996 0.92988 0.95567 0.92854 0.95452 0.95512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.30 36.01 0.33 -0.71 16 2 C 0.12 1.30 6.90 -81.99 -0.57 0.73 16 3 N -0.24 -2.97 11.42 33.81 0.39 -2.59 16 4 N -0.23 -2.53 11.48 30.53 0.35 -2.18 16 5 C 0.03 0.21 11.30 -17.42 -0.20 0.02 16 6 C -0.09 -0.64 7.80 -38.78 -0.30 -0.95 16 7 C -0.12 -1.22 4.84 -104.57 -0.51 -1.73 16 8 C 0.55 6.39 6.10 -12.20 -0.07 6.32 16 9 O -0.48 -7.21 8.53 5.36 0.05 -7.16 16 10 N -0.60 -5.96 2.98 -166.48 -0.50 -6.46 16 11 C 0.10 0.68 5.34 -3.71 -0.02 0.66 16 12 C -0.13 -0.85 6.08 -26.61 -0.16 -1.02 16 13 C -0.12 -0.90 5.89 -26.69 -0.16 -1.06 16 14 C -0.13 -1.38 4.81 -26.83 -0.13 -1.51 16 15 C 0.16 1.93 2.46 -67.82 -0.17 1.77 16 16 H 0.08 0.94 7.89 -51.93 -0.41 0.53 16 17 C -0.10 -1.57 1.86 -88.79 -0.17 -1.73 16 18 H 0.11 1.86 5.98 -51.86 -0.31 1.55 16 19 C -0.12 -2.25 5.64 -24.47 -0.14 -2.38 16 20 C 0.11 2.59 4.68 -2.41 -0.01 2.57 16 21 N -0.61 -15.43 3.22 -169.94 -0.55 -15.98 16 22 C -0.24 -6.97 10.60 -15.06 -0.16 -7.13 16 23 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 24 C 0.02 0.55 5.45 -17.43 -0.10 0.46 16 25 N -0.92 -29.10 13.97 55.49 0.78 -28.33 16 26 Si 0.89 23.95 24.24 -169.99 -4.12 19.83 16 27 H -0.29 -7.52 6.46 56.52 0.37 -7.16 16 28 H -0.31 -8.25 7.11 56.52 0.40 -7.85 16 29 H -0.28 -7.40 6.43 56.52 0.36 -7.03 16 30 C 0.14 2.77 5.85 -3.07 -0.02 2.75 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 0.88 6.74 -51.93 -0.35 0.53 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.16 0.75 7.45 -52.49 -0.39 0.35 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.47 5.18 -51.93 -0.27 0.20 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.96 6.70 -51.93 -0.35 0.61 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.63 5.41 -52.83 -0.29 1.35 16 45 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 46 H 0.05 1.31 6.41 -51.93 -0.33 0.97 16 47 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 48 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 49 H 0.03 0.52 6.84 -51.93 -0.36 0.17 16 50 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -35.40 370.41 -8.16 -43.56 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -7.60 Total: -3.36 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -2.53 Total: -2.93 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.47 Total: -55.53 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.05 Total: -7.16 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.12 Total: 19.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.40 -8.16 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039216896.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.887 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds