Wall clock time and date at job start Wed Apr 1 2020 03:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31927 * 120.17172 * 2 1 4 4 N 1.28281 * 122.32424 * 179.97438 * 3 2 1 5 5 C 1.31913 * 122.51574 * 0.02562 * 4 3 2 6 6 C 1.38502 * 119.97385 * 359.97438 * 5 4 3 7 7 C 1.39729 * 120.17129 * 179.72445 * 2 1 3 8 8 C 1.48135 * 121.14541 * 359.97438 * 7 2 1 9 9 O 1.21511 * 119.99925 * 47.68719 * 8 7 2 10 10 N 1.34772 * 119.99727 * 227.68527 * 8 7 2 11 11 C 1.46921 * 120.63432 * 6.46261 * 10 8 7 12 12 C 1.53192 * 108.77758 * 126.36942 * 11 10 8 13 13 C 1.53038 * 109.31427 * 54.63241 * 12 11 10 14 14 C 1.53036 * 109.53620 * 298.63726 * 13 12 11 15 15 C 1.46926 * 120.62592 * 186.18031 * 10 8 7 16 16 H 1.08999 * 109.58843 * 113.84761 * 15 10 8 17 17 C 1.53001 * 109.59050 * 353.41914 * 15 10 8 18 18 H 1.09000 * 110.63785 * 313.57223 * 17 15 10 19 19 C 1.55154 * 110.71788 * 76.71121 * 17 15 10 20 20 C 1.55124 * 101.48284 * 153.73541 * 19 17 15 21 21 N 1.47421 * 104.94534 * 323.22245 * 20 19 17 22 22 C 1.36935 * 125.64666 * 204.03650 * 21 20 19 23 23 H 1.08002 * 119.99528 * 162.05236 * 22 21 20 24 24 C 1.38804 * 120.00373 * 342.05524 * 22 21 20 25 25 N 1.31618 * 120.00190 * 159.83153 * 24 22 21 26 26 Si 1.86806 * 119.99971 * 339.82522 * 24 22 21 27 27 H 1.48496 * 109.46808 * 84.65833 * 26 24 22 28 28 H 1.48500 * 109.47216 * 204.65494 * 26 24 22 29 29 H 1.48496 * 109.47151 * 324.65958 * 26 24 22 30 30 C 1.47022 * 108.70057 * 24.00580 * 21 20 19 31 31 H 1.09001 * 109.46926 * 89.42113 * 1 2 3 32 32 H 1.08997 * 109.46830 * 209.42020 * 1 2 3 33 33 H 1.08998 * 109.47058 * 329.42193 * 1 2 3 34 34 H 1.08002 * 120.01511 * 180.02562 * 5 4 3 35 35 H 1.07997 * 121.09157 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.58550 * 246.15387 * 11 10 8 37 37 H 1.08998 * 109.58730 * 6.57646 * 11 10 8 38 38 H 1.09002 * 109.49502 * 174.58770 * 12 11 10 39 39 H 1.09006 * 109.49268 * 294.64881 * 12 11 10 40 40 H 1.08998 * 109.45740 * 58.65782 * 13 12 11 41 41 H 1.09000 * 109.45557 * 178.61417 * 13 12 11 42 42 H 1.09005 * 109.49840 * 181.31805 * 14 13 12 43 43 H 1.09002 * 109.49900 * 301.38028 * 14 13 12 44 44 H 1.09002 * 111.00337 * 271.93920 * 19 17 15 45 45 H 1.09001 * 111.00711 * 35.79605 * 19 17 15 46 46 H 1.09007 * 110.41943 * 204.29175 * 20 19 17 47 47 H 1.09004 * 110.20615 * 82.04818 * 20 19 17 48 48 H 0.97007 * 120.00472 * 180.02562 * 25 24 22 49 49 H 1.09002 * 109.87679 * 239.52470 * 30 21 20 50 50 H 1.08998 * 109.88611 * 118.36248 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1887 0.0005 5 6 4.2023 0.1038 0.0005 6 6 3.6091 -1.1478 0.0006 7 6 2.2093 -1.2080 0.0058 8 6 1.4983 -2.5075 0.0126 9 8 0.5849 -2.7044 -0.7642 10 7 1.8645 -3.4714 0.8804 11 6 2.8689 -3.2021 1.9183 12 6 2.2835 -3.5831 3.2818 13 6 1.7993 -5.0342 3.2371 14 6 0.6990 -5.1743 2.1828 15 6 1.2624 -4.8098 0.8104 16 1 2.0219 -5.5378 0.5253 17 6 0.1333 -4.8110 -0.2221 18 1 -0.5112 -3.9423 -0.0877 19 6 0.7073 -4.8509 -1.6631 20 6 -0.4567 -5.5192 -2.4408 21 7 -1.0096 -6.5207 -1.5110 22 6 -1.7092 -7.6419 -1.8694 23 1 -1.8235 -8.4545 -1.1672 24 6 -2.2714 -7.7342 -3.1351 25 7 -2.5881 -8.9118 -3.6304 26 14 -2.5789 -6.1869 -4.1356 27 1 -1.3387 -5.8122 -4.8614 28 1 -3.6679 -6.4379 -5.1135 29 1 -2.9743 -5.0806 -3.2274 30 6 -0.6848 -6.1166 -0.1352 31 1 -0.3633 0.0104 -1.0276 32 1 -0.3633 -0.8951 0.5048 33 1 -0.3633 0.8847 0.5228 34 1 5.2788 0.1914 0.0014 35 1 4.2060 -2.0478 0.0002 36 1 3.7621 -3.7963 1.7253 37 1 3.1244 -2.1425 1.9135 38 1 3.0507 -3.4789 4.0490 39 1 1.4452 -2.9262 3.5140 40 1 2.6333 -5.6875 2.9808 41 1 1.4048 -5.3154 4.2135 42 1 0.3383 -6.2028 2.1678 43 1 -0.1250 -4.5033 2.4255 44 1 0.9020 -3.8446 -2.0341 45 1 1.6080 -5.4632 -1.7081 46 1 -0.0825 -6.0043 -3.3424 47 1 -1.2144 -4.7779 -2.6946 48 1 -2.9806 -8.9763 -4.5151 49 1 -0.0931 -6.8933 0.3493 50 1 -1.6025 -5.9423 0.4265 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039216896.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:26 Heat of formation + Delta-G solvation = 61.045186 kcal Electronic energy + Delta-G solvation = -32030.607885 eV Core-core repulsion = 28059.438363 eV Total energy + Delta-G solvation = -3971.169521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.64034 -41.50834 -39.07411 -38.45045 -35.42644 -34.76660 -34.49979 -33.53270 -32.94417 -31.09610 -29.41874 -29.24334 -27.46872 -26.15318 -25.45293 -24.39792 -23.72591 -22.96252 -21.86979 -21.17157 -20.68674 -18.98461 -18.82987 -18.17385 -17.42854 -17.25983 -16.92770 -16.59295 -16.49609 -15.88891 -15.84187 -15.52588 -15.21006 -15.06204 -14.93074 -14.43942 -14.37058 -14.18998 -14.14131 -14.07428 -13.91034 -13.90130 -13.35537 -13.24047 -13.00770 -12.94323 -12.57825 -12.27209 -12.10845 -12.05895 -11.89389 -11.68285 -11.61125 -11.59152 -11.39089 -11.20949 -11.07063 -10.96020 -10.85624 -10.81548 -10.07415 -9.55529 -9.04841 -8.20833 -5.46250 -0.63746 -0.18919 1.24899 1.32565 1.41939 1.46715 1.75465 2.37079 2.43259 2.92485 3.04099 3.10617 3.30593 3.34437 3.53916 3.68600 3.71131 3.84209 3.89263 4.02341 4.08638 4.15599 4.21893 4.29952 4.31465 4.39073 4.41856 4.48634 4.57075 4.58186 4.62501 4.67103 4.76597 4.81573 4.87354 4.91398 4.94327 5.00708 5.08080 5.09490 5.15703 5.18669 5.21072 5.25255 5.30093 5.45904 5.49903 5.64562 5.72324 6.07857 6.28557 6.75301 7.03933 7.52724 7.58875 8.12031 8.99391 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.003704 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.095023 B = 7558.139594 C = 8994.628799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.105 3.895 3 N -0.273 5.273 4 N -0.259 5.259 5 C 0.040 3.960 6 C -0.066 4.066 7 C -0.132 4.132 8 C 0.549 3.451 9 O -0.523 6.523 10 N -0.589 5.589 11 C 0.097 3.903 12 C -0.131 4.131 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.169 3.831 16 H 0.086 0.914 17 C -0.078 4.078 18 H 0.095 0.905 19 C -0.106 4.106 20 C 0.104 3.896 21 N -0.629 5.629 22 C -0.229 4.229 23 H 0.066 0.934 24 C -0.036 4.036 25 N -0.957 5.957 26 Si 0.946 3.054 27 H -0.277 1.277 28 H -0.305 1.305 29 H -0.278 1.278 30 C 0.134 3.866 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.220 0.780 35 H 0.191 0.809 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.101 0.899 45 H 0.062 0.938 46 H 0.031 0.969 47 H 0.012 0.988 48 H 0.262 0.738 49 H 0.040 0.960 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.711 17.540 17.086 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.041 4.041 3 N -0.115 5.115 4 N -0.099 5.099 5 C -0.124 4.124 6 C -0.096 4.096 7 C -0.147 4.147 8 C 0.337 3.663 9 O -0.401 6.401 10 N -0.322 5.322 11 C -0.024 4.024 12 C -0.169 4.169 13 C -0.152 4.152 14 C -0.171 4.171 15 C 0.066 3.934 16 H 0.104 0.896 17 C -0.097 4.097 18 H 0.113 0.887 19 C -0.143 4.143 20 C -0.021 4.021 21 N -0.356 5.356 22 C -0.358 4.358 23 H 0.083 0.917 24 C -0.230 4.230 25 N -0.605 5.605 26 Si 0.776 3.224 27 H -0.203 1.203 28 H -0.233 1.233 29 H -0.204 1.204 30 C 0.009 3.991 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.237 0.763 35 H 0.209 0.791 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.118 0.882 45 H 0.081 0.919 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.071 0.929 49 H 0.058 0.942 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 19.066 18.953 16.576 31.583 hybrid contribution -0.957 -1.371 -1.088 1.995 sum 18.109 17.582 15.488 29.613 Atomic orbital electron populations 1.20704 0.86794 1.04056 1.04151 1.23108 0.99584 0.89100 0.92264 1.73016 1.02424 1.24606 1.11462 1.72791 0.99420 1.29771 1.07907 1.24944 1.04325 0.88255 0.94914 1.23099 0.92740 1.01840 0.91888 1.21143 0.96036 0.94581 1.02921 1.18181 0.83707 0.83262 0.81192 1.90857 1.29373 1.79243 1.40626 1.48011 1.41748 1.10703 1.31693 1.22246 0.90944 1.02836 0.86414 1.21916 1.01732 0.96534 0.96727 1.21514 0.98078 0.97031 0.98626 1.21945 0.99159 1.02277 0.93687 1.21135 0.94168 0.82776 0.95276 0.89613 1.22507 0.96834 0.96306 0.94072 0.88677 1.23184 0.95540 1.00364 0.95240 1.22052 0.95111 0.90805 0.94108 1.44979 1.63196 1.24621 1.02800 1.18678 1.25775 0.92349 0.98987 0.91665 1.25526 1.00360 0.98705 0.98438 1.69922 1.48732 1.23787 1.18066 0.85998 0.77095 0.81135 0.78178 1.20313 1.23347 1.20356 1.21678 0.96666 0.95382 0.85337 0.89723 0.90550 0.89010 0.76345 0.79141 0.88032 0.89028 0.88025 0.92591 0.90462 0.90736 0.90674 0.92342 0.88163 0.91916 0.95043 0.97069 0.92885 0.94188 0.96130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.30 71.24 0.66 -1.38 16 2 C 0.10 2.24 6.90 42.91 0.30 2.53 16 3 N -0.27 -6.40 11.42 -46.95 -0.54 -6.94 16 4 N -0.26 -5.16 11.48 -57.34 -0.66 -5.82 16 5 C 0.04 0.44 11.30 84.74 0.96 1.40 16 6 C -0.07 -0.69 7.80 22.79 0.18 -0.51 16 7 C -0.13 -2.35 4.84 -19.83 -0.10 -2.45 16 8 C 0.55 11.66 6.10 86.87 0.53 12.19 16 9 O -0.52 -15.28 8.53 -3.75 -0.03 -15.31 16 10 N -0.59 -9.86 2.98 -798.91 -2.38 -12.24 16 11 C 0.10 0.81 5.34 86.36 0.46 1.27 16 12 C -0.13 -1.10 6.08 30.67 0.19 -0.91 16 13 C -0.12 -1.30 5.89 30.62 0.18 -1.12 16 14 C -0.13 -2.45 4.81 30.53 0.15 -2.30 16 15 C 0.17 3.63 2.46 44.83 0.11 3.74 16 16 H 0.09 1.77 7.89 -2.39 -0.02 1.75 16 17 C -0.08 -2.49 1.86 -9.61 -0.02 -2.51 16 18 H 0.10 3.33 5.98 -4.21 -0.03 3.30 16 19 C -0.11 -3.77 5.64 32.06 0.18 -3.59 16 20 C 0.10 4.90 4.68 86.93 0.41 5.30 16 21 N -0.63 -32.24 3.22 -691.57 -2.23 -34.47 16 22 C -0.23 -13.85 10.60 84.03 0.89 -12.95 16 23 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 24 C -0.04 -2.25 5.45 84.86 0.46 -1.78 16 25 N -0.96 -62.66 13.97 21.65 0.30 -62.36 16 26 Si 0.95 50.98 24.24 68.60 1.66 52.65 16 27 H -0.28 -14.29 6.46 99.48 0.64 -13.65 16 28 H -0.31 -16.29 7.11 99.48 0.71 -15.58 16 29 H -0.28 -14.88 6.43 99.48 0.64 -14.24 16 30 C 0.13 5.36 5.85 86.73 0.51 5.86 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.65 6.74 -2.39 -0.02 1.63 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.22 0.38 8.06 -2.91 -0.02 0.36 16 35 H 0.19 0.60 7.45 -2.91 -0.02 0.58 16 36 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.09 0.61 5.18 -2.39 -0.01 0.60 16 38 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 1.56 6.70 -2.38 -0.02 1.54 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.10 3.50 5.41 -19.65 -0.11 3.39 16 45 H 0.06 2.08 7.87 -2.39 -0.02 2.06 16 46 H 0.03 1.59 6.41 -2.38 -0.02 1.58 16 47 H 0.01 0.59 5.47 -2.38 -0.01 0.57 16 48 H 0.26 16.30 8.31 -92.70 -0.77 15.53 16 49 H 0.04 1.50 6.84 -2.39 -0.02 1.49 16 50 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -81.19 370.41 2.89 -78.30 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 0.72 Total: 3.40 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.04 Total: 2.80 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -5.50 Total: -121.83 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.03 Total: -15.31 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 1.66 Total: 52.65 kcal Total: -81.19 2.89 -78.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039216896.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.342 kcal (2) G-P(sol) polarization free energy of solvation -81.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds