Wall clock time and date at job start Wed Apr 1 2020 03:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38550 * 120.02092 * 2 1 4 4 C 1.40067 * 117.82380 * 180.23976 * 3 2 1 5 5 C 1.48130 * 121.15102 * 179.78956 * 4 3 2 6 6 O 1.21512 * 119.99937 * 32.53712 * 5 4 3 7 7 N 1.34782 * 120.00063 * 212.54341 * 5 4 3 8 8 C 1.46958 * 120.65190 * 6.78392 * 7 5 4 9 9 C 1.53193 * 108.88484 * 233.53084 * 8 7 5 10 10 C 1.53040 * 109.31368 * 305.44336 * 9 8 7 11 11 C 1.53038 * 109.54012 * 61.36615 * 10 9 8 12 12 C 1.46927 * 120.62900 * 186.96065 * 7 5 4 13 13 H 1.08998 * 109.58596 * 246.32507 * 12 7 5 14 14 C 1.52998 * 109.58583 * 6.60942 * 12 7 5 15 15 H 1.09004 * 110.64466 * 303.16429 * 14 12 7 16 16 C 1.55153 * 110.72197 * 66.31278 * 14 12 7 17 17 C 1.54910 * 101.58219 * 153.86565 * 16 14 12 18 18 N 1.47421 * 104.83264 * 322.98561 * 17 16 14 19 19 C 1.36936 * 125.65234 * 204.09539 * 18 17 16 20 20 H 1.07999 * 119.99913 * 172.67771 * 19 18 17 21 21 C 1.38813 * 119.99654 * 352.68136 * 19 18 17 22 22 N 1.31625 * 120.00042 * 323.49459 * 21 19 18 23 23 Si 1.86796 * 120.00024 * 143.49937 * 21 19 18 24 24 H 1.48500 * 109.47257 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47457 * 299.99914 * 23 21 19 26 26 H 1.48505 * 109.47300 * 59.99966 * 23 21 19 27 27 C 1.47025 * 108.70222 * 24.35681 * 18 17 16 28 28 C 1.39773 * 117.70419 * 359.51605 * 4 3 2 29 29 N 1.31895 * 119.65316 * 0.25161 * 28 4 3 30 30 N 1.28275 * 122.33521 * 359.97438 * 29 28 4 31 31 H 1.09005 * 109.47114 * 270.26199 * 1 2 3 32 32 H 1.09003 * 109.47423 * 30.25154 * 1 2 3 33 33 H 1.08993 * 109.47466 * 150.25775 * 1 2 3 34 34 H 1.07999 * 121.08591 * 0.03056 * 3 2 1 35 35 H 1.09000 * 109.46491 * 113.74661 * 8 7 5 36 36 H 1.08996 * 109.71576 * 353.45998 * 8 7 5 37 37 H 1.09001 * 109.49551 * 185.49721 * 9 8 7 38 38 H 1.08997 * 109.50111 * 65.39820 * 9 8 7 39 39 H 1.09006 * 109.45800 * 301.34695 * 10 9 8 40 40 H 1.09000 * 109.45696 * 181.38879 * 10 9 8 41 41 H 1.08993 * 109.50151 * 178.68541 * 11 10 9 42 42 H 1.09002 * 109.52488 * 58.59755 * 11 10 9 43 43 H 1.08997 * 111.00611 * 35.78278 * 16 14 12 44 44 H 1.09008 * 111.03394 * 271.95242 * 16 14 12 45 45 H 1.09004 * 110.36109 * 204.15192 * 17 16 14 46 46 H 1.08993 * 110.46316 * 81.87394 * 17 16 14 47 47 H 0.96997 * 119.99471 * 353.96779 * 22 21 19 48 48 H 1.09004 * 109.88235 * 118.12612 * 27 18 17 49 49 H 1.08994 * 109.88904 * 239.29696 * 27 18 17 50 50 H 1.07999 * 120.17306 * 180.22774 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0052 5 6 4.4141 2.3833 -0.0102 6 8 4.0091 3.3794 0.5558 7 7 5.6041 2.4044 -0.6426 8 6 6.0411 1.2605 -1.4551 9 6 7.4276 0.8153 -0.9793 10 6 8.3822 2.0110 -1.0124 11 6 7.8727 3.0991 -0.0644 12 6 6.4912 3.5702 -0.5298 13 1 6.5793 4.0576 -1.5007 14 6 5.9155 4.5561 0.4887 15 1 4.9047 4.8522 0.2080 16 6 5.9325 3.9449 1.9147 17 6 5.9929 5.2164 2.7974 18 7 6.8612 6.1493 2.0565 19 6 7.5772 7.1797 2.6049 20 1 8.2767 7.7347 1.9974 21 6 7.4038 7.5109 3.9418 22 7 6.2098 7.4315 4.4900 23 14 8.8650 8.0695 4.9627 24 1 8.4179 8.3621 6.3482 25 1 9.8900 6.9953 4.9892 26 1 9.4487 9.2959 4.3620 27 6 6.8263 5.7941 0.6302 28 6 4.2017 -0.1155 0.0004 29 7 3.4482 -1.1981 0.0053 30 7 2.1667 -1.1420 0.0055 31 1 -0.3633 0.0047 1.0277 32 1 -0.3634 0.8877 -0.5177 33 1 -0.3634 -0.8922 -0.5098 34 1 1.6783 2.1452 0.0005 35 1 6.0921 1.5573 -2.5026 36 1 5.3347 0.4381 -1.3423 37 1 7.8035 0.0314 -1.6369 38 1 7.3576 0.4337 0.0393 39 1 8.4326 2.4074 -2.0265 40 1 9.3756 1.6913 -0.6977 41 1 8.5652 3.9407 -0.0708 42 1 7.7984 2.6966 0.9458 43 1 6.8159 3.3238 2.0630 44 1 5.0219 3.3778 2.1082 45 1 6.4285 4.9832 3.7691 46 1 4.9972 5.6420 2.9211 47 1 5.4368 7.2267 3.9410 48 1 6.4200 6.6236 0.0514 49 1 7.8312 5.5542 0.2831 50 1 5.2781 -0.2034 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039223005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:38 Heat of formation + Delta-G solvation = 91.115263 kcal Electronic energy + Delta-G solvation = -31758.533252 eV Core-core repulsion = 27788.667666 eV Total energy + Delta-G solvation = -3969.865585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.87076 -40.62327 -37.78671 -37.19019 -34.53433 -34.10696 -33.05773 -32.62052 -31.03770 -29.00934 -28.67320 -27.67784 -26.11879 -25.00032 -24.26748 -23.78425 -23.00583 -21.29702 -20.44301 -19.87352 -19.10588 -18.02738 -17.46012 -17.31392 -16.91637 -16.12384 -15.55137 -15.41471 -15.10197 -14.81950 -14.66593 -14.18135 -14.06794 -13.93264 -13.69176 -13.55437 -13.36208 -13.26941 -13.00922 -12.86915 -12.80372 -12.29287 -12.15107 -11.72712 -11.46290 -11.38873 -11.14747 -10.85058 -10.76063 -10.68413 -10.56352 -10.45740 -10.27646 -10.16370 -10.08908 -9.97663 -9.90771 -9.82706 -9.57105 -8.93237 -8.60181 -8.20951 -6.84744 -6.08490 -2.93739 0.06058 0.44625 2.44054 2.59944 3.17915 3.54997 3.57580 3.60317 3.77896 3.86813 4.00880 4.15915 4.41976 4.46004 4.57964 4.65405 4.70282 4.72186 4.86491 4.94857 5.06793 5.08656 5.13764 5.23840 5.30336 5.32260 5.34051 5.42433 5.51443 5.56729 5.59473 5.66178 5.70787 5.76346 5.79353 5.91393 5.94602 5.97192 6.08194 6.28340 6.37321 6.47375 6.61955 6.71131 6.77828 7.08901 7.15538 7.17274 7.27484 7.89507 7.95040 8.28378 8.57958 9.10997 9.93390 10.52392 11.26992 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.003213 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.619959 B = 8712.762926 C = 9982.744124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.070 3.930 3 C -0.065 4.065 4 C -0.119 4.119 5 C 0.551 3.449 6 O -0.487 6.487 7 N -0.595 5.595 8 C 0.081 3.919 9 C -0.138 4.138 10 C -0.119 4.119 11 C -0.139 4.139 12 C 0.163 3.837 13 H 0.074 0.926 14 C -0.102 4.102 15 H 0.111 0.889 16 C -0.130 4.130 17 C 0.149 3.851 18 N -0.601 5.601 19 C -0.344 4.344 20 H 0.066 0.934 21 C -0.022 4.022 22 N -0.906 5.906 23 Si 1.050 2.950 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.294 1.294 27 C 0.138 3.862 28 C 0.048 3.952 29 N -0.238 5.238 30 N -0.234 5.234 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.161 0.839 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.019 0.981 47 H 0.269 0.731 48 H 0.016 0.984 49 H 0.024 0.976 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.306 -17.933 -15.273 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.075 4.075 3 C -0.095 4.095 4 C -0.134 4.134 5 C 0.337 3.663 6 O -0.362 6.362 7 N -0.328 5.328 8 C -0.042 4.042 9 C -0.176 4.176 10 C -0.156 4.156 11 C -0.177 4.177 12 C 0.061 3.939 13 H 0.092 0.908 14 C -0.120 4.120 15 H 0.128 0.872 16 C -0.167 4.167 17 C 0.024 3.976 18 N -0.328 5.328 19 C -0.471 4.471 20 H 0.084 0.916 21 C -0.224 4.224 22 N -0.546 5.546 23 Si 0.880 3.120 24 H -0.212 1.212 25 H -0.223 1.223 26 H -0.221 1.221 27 C 0.012 3.988 28 C -0.116 4.116 29 N -0.078 5.078 30 N -0.078 5.078 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.179 0.821 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.079 0.921 48 H 0.034 0.966 49 H 0.042 0.958 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.028 -18.512 -13.396 23.397 hybrid contribution -0.151 1.237 -1.617 2.042 sum -5.179 -17.275 -15.013 23.466 Atomic orbital electron populations 1.20726 0.86819 1.04338 1.04106 1.22950 0.99436 0.89856 0.95251 1.22477 0.93019 1.00716 0.93251 1.21425 0.95386 0.95765 1.00795 1.17922 0.81537 0.86842 0.79964 1.90867 1.70108 1.32562 1.42624 1.47953 1.17450 1.18626 1.48791 1.22388 0.97153 0.89210 0.95400 1.21960 0.94621 0.98699 1.02311 1.21530 0.98670 0.95333 1.00097 1.22175 0.96015 0.99358 1.00143 1.21303 0.88693 0.84428 0.99499 0.90825 1.22786 1.00679 0.94220 0.94357 0.87152 1.23220 1.00325 0.98297 0.94897 1.21426 0.93658 0.87894 0.94621 1.44588 1.54475 1.33000 1.00742 1.19663 1.18340 1.12624 0.96513 0.91575 1.25555 1.01393 1.00024 0.95421 1.70770 0.98189 1.44854 1.40755 0.83745 0.75997 0.75684 0.76613 1.21240 1.22321 1.22141 1.21417 0.95958 0.93690 0.87778 1.24887 1.02966 0.88847 0.94876 1.73079 0.99245 1.26697 1.08814 1.72821 1.01907 1.24955 1.08137 0.89407 0.89902 0.89651 0.82143 0.90800 0.88656 0.90360 0.91200 0.91825 0.91410 0.89580 0.90367 0.92491 0.90816 0.93595 0.96335 0.92052 0.96633 0.95823 0.79747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 10.19 36.00 0.37 -0.24 16 2 C 0.07 0.66 6.86 -82.45 -0.57 0.10 16 3 C -0.06 -0.65 9.48 -38.78 -0.37 -1.02 16 4 C -0.12 -1.32 5.48 -104.58 -0.57 -1.89 16 5 C 0.55 7.17 6.57 -12.20 -0.08 7.09 16 6 O -0.49 -8.04 10.46 5.35 0.06 -7.99 16 7 N -0.59 -6.76 2.96 -166.19 -0.49 -7.26 16 8 C 0.08 0.64 5.55 -3.69 -0.02 0.62 16 9 C -0.14 -1.00 5.75 -26.61 -0.15 -1.16 16 10 C -0.12 -1.05 5.88 -26.69 -0.16 -1.21 16 11 C -0.14 -1.73 4.79 -26.61 -0.13 -1.85 16 12 C 0.16 2.17 2.75 -67.60 -0.19 1.98 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.10 -1.82 2.06 -88.78 -0.18 -2.00 16 15 H 0.11 2.16 5.82 -52.51 -0.31 1.85 16 16 C -0.13 -2.54 5.37 -24.58 -0.13 -2.68 16 17 C 0.15 3.75 5.32 -2.53 -0.01 3.74 16 18 N -0.60 -15.94 3.36 -170.07 -0.57 -16.51 16 19 C -0.34 -10.10 9.95 -15.06 -0.15 -10.25 16 20 H 0.07 1.93 8.04 -52.49 -0.42 1.51 16 21 C -0.02 -0.64 4.91 -17.43 -0.09 -0.73 16 22 N -0.91 -28.39 12.77 55.49 0.71 -27.68 16 23 Si 1.05 26.06 30.04 -169.99 -5.11 20.95 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.30 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.14 2.97 6.67 -3.05 -0.02 2.95 16 28 C 0.05 0.49 8.77 -16.95 -0.15 0.35 16 29 N -0.24 -2.82 11.49 30.78 0.35 -2.47 16 30 N -0.23 -2.75 11.40 33.58 0.38 -2.37 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.16 1.40 8.05 -52.49 -0.42 0.97 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.69 3.55 -51.93 -0.18 0.50 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.19 6.40 -51.93 -0.33 0.85 16 42 H 0.08 1.10 5.71 -51.93 -0.30 0.80 16 43 H 0.06 1.08 5.49 -51.93 -0.29 0.79 16 44 H 0.07 1.44 5.55 -51.92 -0.29 1.15 16 45 H 0.05 1.26 7.63 -51.93 -0.40 0.87 16 46 H 0.02 0.51 7.15 -51.93 -0.37 0.14 16 47 H 0.27 8.56 6.55 -40.82 -0.27 8.29 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.02 0.49 5.93 -51.93 -0.31 0.18 16 50 H 0.19 1.50 5.10 -52.49 -0.27 1.23 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -35.11 372.02 -8.80 -43.91 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.14 Total: -0.01 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.60 Total: -6.19 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.38 Total: -56.28 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.06 Total: -7.99 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.11 Total: 20.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.11 -8.80 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039223005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.024 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds