Wall clock time and date at job start Wed Apr 1 2020 03:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38550 * 120.02092 * 2 1 4 4 C 1.40067 * 117.82380 * 180.23976 * 3 2 1 5 5 C 1.48130 * 121.15102 * 179.78956 * 4 3 2 6 6 O 1.21512 * 119.99937 * 32.53712 * 5 4 3 7 7 N 1.34782 * 120.00063 * 212.54341 * 5 4 3 8 8 C 1.46958 * 120.65190 * 6.78392 * 7 5 4 9 9 C 1.53193 * 108.88484 * 233.53084 * 8 7 5 10 10 C 1.53040 * 109.31368 * 305.44336 * 9 8 7 11 11 C 1.53038 * 109.54012 * 61.36615 * 10 9 8 12 12 C 1.46927 * 120.62900 * 186.96065 * 7 5 4 13 13 H 1.08998 * 109.58596 * 246.32507 * 12 7 5 14 14 C 1.52998 * 109.58583 * 6.60942 * 12 7 5 15 15 H 1.09004 * 110.64466 * 303.16429 * 14 12 7 16 16 C 1.55153 * 110.72197 * 66.31278 * 14 12 7 17 17 C 1.54910 * 101.58219 * 153.86565 * 16 14 12 18 18 N 1.47421 * 104.83264 * 322.98561 * 17 16 14 19 19 C 1.36936 * 125.65234 * 204.09539 * 18 17 16 20 20 H 1.07999 * 119.99913 * 172.67771 * 19 18 17 21 21 C 1.38813 * 119.99654 * 352.68136 * 19 18 17 22 22 N 1.31625 * 120.00042 * 323.49459 * 21 19 18 23 23 Si 1.86796 * 120.00024 * 143.49937 * 21 19 18 24 24 H 1.48500 * 109.47257 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47457 * 299.99914 * 23 21 19 26 26 H 1.48505 * 109.47300 * 59.99966 * 23 21 19 27 27 C 1.47025 * 108.70222 * 24.35681 * 18 17 16 28 28 C 1.39773 * 117.70419 * 359.51605 * 4 3 2 29 29 N 1.31895 * 119.65316 * 0.25161 * 28 4 3 30 30 N 1.28275 * 122.33521 * 359.97438 * 29 28 4 31 31 H 1.09005 * 109.47114 * 270.26199 * 1 2 3 32 32 H 1.09003 * 109.47423 * 30.25154 * 1 2 3 33 33 H 1.08993 * 109.47466 * 150.25775 * 1 2 3 34 34 H 1.07999 * 121.08591 * 0.03056 * 3 2 1 35 35 H 1.09000 * 109.46491 * 113.74661 * 8 7 5 36 36 H 1.08996 * 109.71576 * 353.45998 * 8 7 5 37 37 H 1.09001 * 109.49551 * 185.49721 * 9 8 7 38 38 H 1.08997 * 109.50111 * 65.39820 * 9 8 7 39 39 H 1.09006 * 109.45800 * 301.34695 * 10 9 8 40 40 H 1.09000 * 109.45696 * 181.38879 * 10 9 8 41 41 H 1.08993 * 109.50151 * 178.68541 * 11 10 9 42 42 H 1.09002 * 109.52488 * 58.59755 * 11 10 9 43 43 H 1.08997 * 111.00611 * 35.78278 * 16 14 12 44 44 H 1.09008 * 111.03394 * 271.95242 * 16 14 12 45 45 H 1.09004 * 110.36109 * 204.15192 * 17 16 14 46 46 H 1.08993 * 110.46316 * 81.87394 * 17 16 14 47 47 H 0.96997 * 119.99471 * 353.96779 * 22 21 19 48 48 H 1.09004 * 109.88235 * 118.12612 * 27 18 17 49 49 H 1.08994 * 109.88904 * 239.29696 * 27 18 17 50 50 H 1.07999 * 120.17306 * 180.22774 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5998 1.1459 -0.0052 5 6 4.4141 2.3833 -0.0102 6 8 4.0091 3.3794 0.5558 7 7 5.6041 2.4044 -0.6426 8 6 6.0411 1.2605 -1.4551 9 6 7.4276 0.8153 -0.9793 10 6 8.3822 2.0110 -1.0124 11 6 7.8727 3.0991 -0.0644 12 6 6.4912 3.5702 -0.5298 13 1 6.5793 4.0576 -1.5007 14 6 5.9155 4.5561 0.4887 15 1 4.9047 4.8522 0.2080 16 6 5.9325 3.9449 1.9147 17 6 5.9929 5.2164 2.7974 18 7 6.8612 6.1493 2.0565 19 6 7.5772 7.1797 2.6049 20 1 8.2767 7.7347 1.9974 21 6 7.4038 7.5109 3.9418 22 7 6.2098 7.4315 4.4900 23 14 8.8650 8.0695 4.9627 24 1 8.4179 8.3621 6.3482 25 1 9.8900 6.9953 4.9892 26 1 9.4487 9.2959 4.3620 27 6 6.8263 5.7941 0.6302 28 6 4.2017 -0.1155 0.0004 29 7 3.4482 -1.1981 0.0053 30 7 2.1667 -1.1420 0.0055 31 1 -0.3633 0.0047 1.0277 32 1 -0.3634 0.8877 -0.5177 33 1 -0.3634 -0.8922 -0.5098 34 1 1.6783 2.1452 0.0005 35 1 6.0921 1.5573 -2.5026 36 1 5.3347 0.4381 -1.3423 37 1 7.8035 0.0314 -1.6369 38 1 7.3576 0.4337 0.0393 39 1 8.4326 2.4074 -2.0265 40 1 9.3756 1.6913 -0.6977 41 1 8.5652 3.9407 -0.0708 42 1 7.7984 2.6966 0.9458 43 1 6.8159 3.3238 2.0630 44 1 5.0219 3.3778 2.1082 45 1 6.4285 4.9832 3.7691 46 1 4.9972 5.6420 2.9211 47 1 5.4368 7.2267 3.9410 48 1 6.4200 6.6236 0.0514 49 1 7.8312 5.5542 0.2831 50 1 5.2781 -0.2034 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039223005.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:37 Heat of formation + Delta-G solvation = 68.293990 kcal Electronic energy + Delta-G solvation = -31759.522856 eV Core-core repulsion = 27788.667666 eV Total energy + Delta-G solvation = -3970.855190 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.76719 -41.62730 -39.14090 -38.45953 -35.64306 -35.05911 -34.41484 -33.61354 -32.46736 -30.78165 -29.52358 -29.00464 -27.20439 -26.21853 -25.74827 -24.63315 -24.18427 -22.39999 -21.96852 -21.31588 -20.12507 -19.59238 -18.88161 -18.20849 -17.76099 -17.21182 -16.87456 -16.53280 -16.20739 -16.02963 -15.67808 -15.60767 -15.23241 -15.07554 -14.91722 -14.84026 -14.51986 -14.40318 -14.06261 -13.89407 -13.76715 -13.46146 -13.24642 -13.14297 -12.63968 -12.46982 -12.41939 -12.33087 -12.05556 -12.02892 -11.91749 -11.76937 -11.70231 -11.69244 -11.48877 -11.39645 -11.20751 -11.04492 -10.73917 -10.44189 -10.13578 -9.63877 -9.04451 -8.44607 -5.25284 -0.78180 -0.30649 1.47909 1.53833 1.62467 1.66093 1.82180 2.36187 2.62731 2.85608 3.02246 3.09057 3.25329 3.39009 3.49691 3.65658 3.71223 3.73429 3.83768 3.96873 4.04249 4.05972 4.13201 4.15229 4.27929 4.30314 4.42382 4.49638 4.56929 4.59972 4.63348 4.71672 4.75698 4.79073 4.81206 4.92063 4.94536 4.96370 5.06148 5.07674 5.17594 5.21627 5.22933 5.24160 5.27724 5.37977 5.48522 5.61595 5.67476 6.21037 6.25226 6.84760 6.93805 7.48707 7.70873 8.31967 8.90768 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014249 B = 0.003213 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.619959 B = 8712.762926 C = 9982.744124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.073 3.927 3 C -0.065 4.065 4 C -0.128 4.128 5 C 0.551 3.449 6 O -0.532 6.532 7 N -0.589 5.589 8 C 0.078 3.922 9 C -0.134 4.134 10 C -0.112 4.112 11 C -0.136 4.136 12 C 0.170 3.830 13 H 0.092 0.908 14 C -0.084 4.084 15 H 0.095 0.905 16 C -0.107 4.107 17 C 0.156 3.844 18 N -0.622 5.622 19 C -0.357 4.357 20 H 0.065 0.935 21 C -0.078 4.078 22 N -0.934 5.934 23 Si 1.110 2.890 24 H -0.292 1.292 25 H -0.281 1.281 26 H -0.272 1.272 27 C 0.132 3.868 28 C 0.056 3.944 29 N -0.258 5.258 30 N -0.257 5.257 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.170 0.830 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.012 0.988 46 H -0.015 1.015 47 H 0.250 0.750 48 H 0.004 0.996 49 H 0.043 0.957 50 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 -19.931 -17.356 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.072 4.072 3 C -0.095 4.095 4 C -0.142 4.142 5 C 0.338 3.662 6 O -0.411 6.411 7 N -0.321 5.321 8 C -0.043 4.043 9 C -0.172 4.172 10 C -0.150 4.150 11 C -0.174 4.174 12 C 0.068 3.932 13 H 0.109 0.891 14 C -0.103 4.103 15 H 0.113 0.887 16 C -0.145 4.145 17 C 0.030 3.970 18 N -0.349 5.349 19 C -0.484 4.484 20 H 0.083 0.917 21 C -0.274 4.274 22 N -0.576 5.576 23 Si 0.934 3.066 24 H -0.218 1.218 25 H -0.207 1.207 26 H -0.197 1.197 27 C 0.007 3.993 28 C -0.108 4.108 29 N -0.097 5.097 30 N -0.100 5.100 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.188 0.812 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.030 0.970 46 H 0.003 0.997 47 H 0.059 0.941 48 H 0.022 0.978 49 H 0.061 0.939 50 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.770 -20.564 -15.547 26.054 hybrid contribution -0.602 1.882 -1.035 2.231 sum -4.373 -18.682 -16.582 25.360 Atomic orbital electron populations 1.20872 0.84379 1.05670 1.05004 1.23404 1.00942 0.88946 0.93917 1.22711 0.92906 1.01431 0.92459 1.21291 0.95678 0.95164 1.02115 1.18211 0.81831 0.86877 0.79237 1.90850 1.71237 1.34217 1.44772 1.48011 1.16555 1.19001 1.48531 1.22669 0.97782 0.88050 0.95780 1.21982 0.93566 0.98728 1.02935 1.21501 0.99265 0.94538 0.99675 1.22107 0.94951 1.00105 1.00216 1.21118 0.89183 0.84350 0.98585 0.89063 1.22580 0.99303 0.93770 0.94615 0.88682 1.23050 1.01026 0.95673 0.94743 1.21286 0.91298 0.90132 0.94301 1.44896 1.54290 1.32562 1.03115 1.19974 1.18236 1.13163 0.97068 0.91728 1.27100 1.02913 1.00367 0.97025 1.70910 0.98522 1.47671 1.40481 0.82953 0.72636 0.76508 0.74545 1.21849 1.20721 1.19712 1.21639 0.97728 0.94957 0.84966 1.25100 1.03718 0.87974 0.94033 1.73032 0.99602 1.27388 1.09694 1.72766 1.02137 1.26088 1.09011 0.88560 0.87937 0.88965 0.81228 0.88794 0.87710 0.87263 0.91585 0.90345 0.90562 0.91126 0.92254 0.91374 0.90422 0.96997 0.99706 0.94077 0.97788 0.93930 0.77771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.19 71.23 0.73 -0.29 16 2 C 0.07 1.29 6.86 42.62 0.29 1.58 16 3 C -0.07 -1.23 9.48 22.79 0.22 -1.01 16 4 C -0.13 -2.67 5.48 -19.84 -0.11 -2.77 16 5 C 0.55 13.81 6.57 86.87 0.57 14.38 16 6 O -0.53 -17.82 10.46 -3.75 -0.04 -17.86 16 7 N -0.59 -12.14 2.96 -798.01 -2.36 -14.50 16 8 C 0.08 0.95 5.55 86.36 0.48 1.43 16 9 C -0.13 -1.39 5.75 30.67 0.18 -1.21 16 10 C -0.11 -1.57 5.88 30.62 0.18 -1.39 16 11 C -0.14 -3.10 4.79 30.67 0.15 -2.96 16 12 C 0.17 4.25 2.75 44.97 0.12 4.37 16 13 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 14 C -0.08 -3.03 2.06 -9.60 -0.02 -3.05 16 15 H 0.10 3.82 5.82 -11.58 -0.07 3.75 16 16 C -0.11 -4.33 5.37 31.99 0.17 -4.16 16 17 C 0.16 8.28 5.32 86.86 0.46 8.74 16 18 N -0.62 -34.25 3.36 -691.96 -2.32 -36.57 16 19 C -0.36 -21.48 9.95 84.03 0.84 -20.65 16 20 H 0.06 3.83 8.04 -2.91 -0.02 3.81 16 21 C -0.08 -4.73 4.91 84.86 0.42 -4.31 16 22 N -0.93 -61.15 12.77 21.65 0.28 -60.87 16 23 Si 1.11 53.37 30.04 68.60 2.06 55.43 16 24 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 C 0.13 5.80 6.67 86.73 0.58 6.38 16 28 C 0.06 1.04 8.77 85.05 0.75 1.79 16 29 N -0.26 -5.72 11.49 -56.52 -0.65 -6.37 16 30 N -0.26 -5.70 11.40 -47.69 -0.54 -6.24 16 31 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.10 0.63 8.09 -2.39 -0.02 0.61 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.17 2.81 8.05 -2.91 -0.02 2.79 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 1.14 3.55 -2.39 -0.01 1.14 16 37 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 39 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 1.84 6.40 -2.39 -0.02 1.82 16 42 H 0.06 1.58 5.71 -2.39 -0.01 1.57 16 43 H 0.07 2.59 5.49 -2.39 -0.01 2.58 16 44 H 0.08 3.13 5.55 -2.38 -0.01 3.12 16 45 H 0.01 0.69 7.63 -2.38 -0.02 0.67 16 46 H -0.01 -0.87 7.15 -2.39 -0.02 -0.89 16 47 H 0.25 16.93 6.55 -92.71 -0.61 16.33 16 48 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 49 H 0.04 1.73 5.93 -2.39 -0.01 1.71 16 50 H 0.21 2.75 5.10 -2.91 -0.01 2.74 16 Total: -1.00 -80.87 372.02 3.49 -77.38 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 1.08 Total: 12.73 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.99 Total: -3.12 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -5.60 Total: -124.55 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.04 Total: -17.86 kcal Atomic # 14 Polarization: 53.37 SS G_CDS: 2.06 Total: 55.43 kcal Total: -80.87 3.49 -77.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039223005.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.673 kcal (2) G-P(sol) polarization free energy of solvation -80.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds