Wall clock time and date at job start Wed Apr 1 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48505 * 109.47073 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47146 * 120.00154 * 3 2 1 6 6 H 1.48498 * 109.47363 * 240.00357 * 3 2 1 7 7 C 1.38813 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.46739 * 120.00217 * 180.02562 * 9 7 2 11 11 C 1.52962 * 109.20595 * 154.99908 * 10 9 7 12 12 C 1.53291 * 109.72662 * 178.69616 * 11 10 9 13 13 H 1.09258 * 110.56150 * 118.85675 * 12 11 10 14 14 C 1.53319 * 109.12780 * 240.61671 * 12 11 10 15 15 C 1.52682 * 110.01785 * 61.39640 * 14 12 11 16 16 C 1.52762 * 110.81906 * 57.87837 * 15 14 12 17 17 C 1.53389 * 109.88448 * 302.27571 * 16 15 14 18 18 H 1.09193 * 110.64323 * 176.62515 * 17 16 15 19 19 C 1.52892 * 109.21828 * 275.70200 * 10 9 7 20 20 N 1.47495 * 107.77095 * 55.81183 * 17 16 15 21 21 C 1.34614 * 122.00594 * 120.05926 * 20 17 16 22 22 O 1.21563 * 120.00209 * 174.68510 * 21 20 17 23 23 C 1.47713 * 119.99756 * 354.68493 * 21 20 17 24 24 C 1.41510 * 126.51478 * 185.01675 * 23 21 20 25 25 C 1.35366 * 105.49930 * 179.97438 * 24 23 21 26 26 C 1.50700 * 126.38296 * 180.02562 * 25 24 23 27 27 C 1.52994 * 117.50008 * 213.61992 * 26 25 24 28 28 C 1.52993 * 60.00292 * 252.51024 * 27 26 25 29 29 N 1.35037 * 107.23243 * 0.02562 * 25 24 23 30 30 H 0.96997 * 124.88607 * 180.02562 * 29 25 24 31 31 N 1.28466 * 110.22777 * 359.74569 * 29 25 24 32 32 H 0.96994 * 120.00509 * 179.97438 * 1 2 3 33 33 H 0.97006 * 119.99469 * 0.02562 * 9 7 2 34 34 H 1.09091 * 108.94473 * 35.36700 * 10 9 7 35 35 H 1.09304 * 109.30175 * 298.52685 * 11 10 9 36 36 H 1.08909 * 109.65350 * 58.01336 * 11 10 9 37 37 H 1.09184 * 109.45435 * 181.73863 * 14 12 11 38 38 H 1.09109 * 109.32573 * 301.13357 * 14 12 11 39 39 H 1.08925 * 109.79700 * 296.50970 * 15 14 12 40 40 H 1.09549 * 109.03663 * 177.76699 * 15 14 12 41 41 H 1.09126 * 109.63886 * 182.11063 * 16 15 14 42 42 H 1.09194 * 109.48446 * 62.26625 * 16 15 14 43 43 H 1.09041 * 109.76423 * 301.86161 * 19 10 9 44 44 H 1.09278 * 109.20973 * 61.29753 * 19 10 9 45 45 H 1.07998 * 127.25108 * 359.96443 * 24 23 21 46 46 H 1.08997 * 115.55052 * 359.33604 * 26 25 24 47 47 H 1.09006 * 117.49883 * 0.02562 * 27 26 25 48 48 H 1.09004 * 117.49866 * 145.02334 * 27 26 25 49 49 H 1.08993 * 117.50139 * 252.50699 * 28 27 26 50 50 H 1.09006 * 117.49679 * 107.48561 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0592 -3.6589 -0.0005 11 6 1.1770 -4.7492 0.6099 12 6 1.9202 -6.0897 0.5861 13 1 2.0606 -6.4687 1.6012 14 6 1.1219 -7.0918 -0.2560 15 6 1.0001 -6.5877 -1.6920 16 6 2.3801 -6.3628 -2.3074 17 6 3.1746 -5.3645 -1.4559 18 1 4.1848 -5.2398 -1.8513 19 6 2.4350 -4.0230 -1.4371 20 7 3.2224 -5.8866 -0.0773 21 6 4.3855 -6.1672 0.5395 22 8 4.3884 -6.5037 1.7076 23 6 5.6584 -6.0661 -0.2032 24 6 6.9423 -6.4211 0.2743 25 6 7.7928 -6.1591 -0.7457 26 6 9.2853 -6.3675 -0.7411 27 6 10.1390 -5.3800 -1.5391 28 6 9.9411 -6.8080 -2.0514 29 7 7.0546 -5.6761 -1.7680 30 1 7.4095 -5.4049 -2.6290 31 7 5.8137 -5.6327 -1.4383 32 1 -0.4850 -0.8400 -0.0004 33 1 0.3555 -2.3880 -0.0005 34 1 2.9650 -3.5450 0.5967 35 1 0.9406 -4.4858 1.6441 36 1 0.2506 -4.8308 0.0433 37 1 1.6309 -8.0578 -0.2511 38 1 0.1260 -7.2117 0.1733 39 1 0.4338 -5.6574 -1.7096 40 1 0.4624 -7.3332 -2.2881 41 1 2.2708 -5.9677 -3.3187 42 1 2.9199 -7.3111 -2.3477 43 1 1.5342 -4.0926 -2.0476 44 1 3.0835 -3.2450 -1.8473 45 1 7.1913 -6.8175 1.2476 46 1 9.7025 -6.7586 0.1868 47 1 9.6211 -4.5793 -2.0672 48 1 11.1181 -5.1211 -1.1362 49 1 10.7900 -7.4885 -1.9854 50 1 9.2930 -6.9470 -2.9167 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039295171.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:30 Heat of formation + Delta-G solvation = 89.584753 kcal Electronic energy + Delta-G solvation = -31485.435066 eV Core-core repulsion = 27515.503113 eV Total energy + Delta-G solvation = -3969.931953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.93320 -40.59136 -37.94618 -37.55085 -35.07229 -33.14944 -32.53427 -31.93708 -31.71436 -30.60625 -28.60412 -25.71674 -25.29172 -23.98905 -23.47340 -23.01745 -22.92501 -21.59336 -21.26765 -20.35990 -19.95105 -18.24855 -17.55002 -17.10383 -16.67805 -15.95522 -15.89099 -15.57616 -15.32198 -14.65436 -14.54591 -14.32189 -13.88767 -13.73707 -13.66715 -13.58192 -13.36223 -13.27335 -12.73705 -12.58861 -12.56363 -12.14280 -11.94913 -11.54789 -11.50830 -11.28530 -11.09357 -10.97777 -10.77566 -10.71712 -10.69618 -10.42716 -10.29095 -10.02652 -9.97721 -9.91357 -9.50460 -9.40541 -9.11819 -9.00047 -8.84957 -8.26899 -6.96484 -6.04280 -3.03054 1.47348 1.87837 2.56876 3.15271 3.41144 3.53808 3.54092 3.58040 3.75209 3.97081 4.24380 4.30191 4.42325 4.65912 4.68458 4.79209 4.95668 5.02503 5.07949 5.10619 5.22343 5.31621 5.33992 5.42272 5.43874 5.47477 5.51704 5.54476 5.57851 5.64493 5.73628 5.80853 5.89862 5.96102 5.97224 6.07263 6.12904 6.18917 6.23756 6.27650 6.35267 6.40910 6.51931 6.62161 6.74225 6.92559 6.99556 7.12590 7.62549 7.81188 7.87865 8.36697 8.81612 9.29453 10.15717 10.31716 11.44387 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009234 B = 0.003724 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.479627 B = 7516.418244 C = 9492.497845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.047 4.047 3 Si 1.078 2.922 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.324 4.324 8 H 0.062 0.938 9 N -0.737 5.737 10 C 0.196 3.804 11 C -0.136 4.136 12 C 0.146 3.854 13 H 0.100 0.900 14 C -0.123 4.123 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.109 3.891 18 H 0.139 0.861 19 C -0.141 4.141 20 N -0.583 5.583 21 C 0.604 3.396 22 O -0.542 6.542 23 C 0.005 3.995 24 C -0.170 4.170 25 C 0.047 3.953 26 C -0.086 4.086 27 C -0.174 4.174 28 C -0.174 4.174 29 N -0.385 5.385 30 H 0.441 0.559 31 N -0.252 5.252 32 H 0.254 0.746 33 H 0.365 0.635 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.163 0.837 46 H 0.133 0.867 47 H 0.095 0.905 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.284 -18.359 -6.611 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.244 4.244 3 Si 0.909 3.091 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.455 4.455 8 H 0.080 0.920 9 N -0.379 5.379 10 C 0.086 3.914 11 C -0.175 4.175 12 C 0.042 3.958 13 H 0.118 0.882 14 C -0.162 4.162 15 C -0.159 4.159 16 C -0.159 4.159 17 C 0.005 3.995 18 H 0.156 0.844 19 C -0.182 4.182 20 N -0.314 5.314 21 C 0.390 3.610 22 O -0.418 6.418 23 C -0.156 4.156 24 C -0.198 4.198 25 C -0.078 4.078 26 C -0.106 4.106 27 C -0.211 4.211 28 C -0.212 4.212 29 N -0.097 5.097 30 H 0.285 0.715 31 N -0.087 5.087 32 H 0.066 0.934 33 H 0.198 0.802 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.180 0.820 46 H 0.151 0.849 47 H 0.113 0.887 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.733 -16.432 -6.813 23.748 hybrid contribution 0.491 -1.749 0.025 1.817 sum 16.225 -18.181 -6.788 25.296 Atomic orbital electron populations 1.70872 1.05985 1.28353 1.53997 1.25709 0.97072 1.00835 1.00764 0.83268 0.74223 0.75799 0.75795 1.21051 1.22347 1.22415 1.20020 0.91871 0.85834 1.47799 0.92045 1.42519 1.04674 1.00796 1.89902 1.19851 0.94076 0.84946 0.92537 1.22315 0.99143 0.93987 1.02021 1.21554 0.81729 0.95523 0.96952 0.88172 1.21904 1.00134 0.98285 0.95834 1.21463 0.97225 1.01760 0.95418 1.21903 0.96018 0.99114 0.98889 1.22635 1.03324 0.93248 0.80312 0.84412 1.22666 0.99967 0.94437 1.01136 1.48265 1.04862 1.62447 1.15791 1.16820 0.81527 0.77331 0.85323 1.90762 1.86365 1.49397 1.15237 1.21981 0.95546 1.06294 0.91751 1.21405 0.90192 1.07623 1.00586 1.20420 0.93486 1.04128 0.89784 1.20525 0.86540 1.05517 0.97980 1.23104 1.01732 0.92975 1.03288 1.23093 1.03266 0.98172 0.96621 1.43412 1.04190 1.47389 1.14755 0.71519 1.73316 0.99021 1.20529 1.15788 0.93441 0.80175 0.93640 0.91478 0.91286 0.92061 0.90905 0.90882 0.92474 0.91149 0.92495 0.91888 0.91800 0.81961 0.84898 0.88674 0.87512 0.87591 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.76 13.70 55.49 0.76 -29.00 16 2 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 3 Si 1.08 26.66 29.92 -169.99 -5.09 21.57 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.30 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.32 -9.38 9.91 -15.06 -0.15 -9.53 16 8 H 0.06 1.79 7.83 -52.48 -0.41 1.37 16 9 N -0.74 -18.98 5.11 -53.31 -0.27 -19.25 16 10 C 0.20 4.15 2.51 -67.88 -0.17 3.98 16 11 C -0.14 -2.40 4.92 -26.60 -0.13 -2.53 16 12 C 0.15 2.28 3.46 -67.04 -0.23 2.05 16 13 H 0.10 1.63 7.21 -51.78 -0.37 1.26 16 14 C -0.12 -1.57 5.37 -26.73 -0.14 -1.71 16 15 C -0.12 -1.51 5.34 -27.02 -0.14 -1.66 16 16 C -0.12 -1.55 5.38 -26.65 -0.14 -1.70 16 17 C 0.11 1.67 3.34 -67.09 -0.22 1.45 16 18 H 0.14 2.09 4.02 -82.86 -0.33 1.76 16 19 C -0.14 -2.61 5.02 -26.69 -0.13 -2.75 16 20 N -0.58 -9.49 1.79 -157.37 -0.28 -9.77 16 21 C 0.60 10.56 7.73 -12.46 -0.10 10.46 16 22 O -0.54 -10.71 16.50 5.31 0.09 -10.62 16 23 C 0.00 0.07 6.93 -82.76 -0.57 -0.50 16 24 C -0.17 -2.15 10.73 -39.36 -0.42 -2.57 16 25 C 0.05 0.46 6.64 -82.21 -0.55 -0.08 16 26 C -0.09 -0.56 6.26 -91.77 -0.57 -1.13 16 27 C -0.17 -0.90 10.22 -26.74 -0.27 -1.17 16 28 C -0.17 -0.82 10.23 -26.73 -0.27 -1.10 16 29 N -0.38 -3.78 6.80 33.50 0.23 -3.55 16 30 H 0.44 2.86 8.96 -190.44 -1.71 1.15 16 31 N -0.25 -3.35 8.65 33.42 0.29 -3.06 16 32 H 0.25 7.87 6.77 -40.82 -0.28 7.59 16 33 H 0.37 9.63 6.62 -40.82 -0.27 9.36 16 34 H 0.05 1.09 7.81 -51.88 -0.41 0.69 16 35 H 0.07 1.24 8.17 -51.76 -0.42 0.82 16 36 H 0.07 1.15 6.38 -51.98 -0.33 0.82 16 37 H 0.06 0.76 8.16 -51.83 -0.42 0.33 16 38 H 0.07 0.82 8.15 -51.87 -0.42 0.40 16 39 H 0.07 1.01 5.27 -51.97 -0.27 0.74 16 40 H 0.06 0.62 8.19 -51.62 -0.42 0.19 16 41 H 0.07 0.84 8.15 -51.86 -0.42 0.41 16 42 H 0.06 0.70 8.16 -51.82 -0.42 0.28 16 43 H 0.06 1.15 6.36 -51.91 -0.33 0.82 16 44 H 0.06 1.31 8.17 -51.77 -0.42 0.89 16 45 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 46 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -35.30 386.43 -11.78 -47.08 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -9.00 Total: 10.74 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -4.33 Total: -9.96 kcal Atomic # 7 Polarization: -65.36 SS G_CDS: 0.72 Total: -64.63 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 26.66 SS G_CDS: -5.09 Total: 21.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.30 -11.78 -47.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039295171.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.667 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds