Wall clock time and date at job start Wed Apr 1 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00004 * 2 1 4 4 H 1.48491 * 109.47355 * 270.00554 * 3 2 1 5 5 H 1.48505 * 109.46872 * 30.00830 * 3 2 1 6 6 H 1.48502 * 109.47093 * 150.00475 * 3 2 1 7 7 C 1.38805 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00541 * 172.20676 * 7 2 1 9 9 N 1.36934 * 119.99844 * 352.47475 * 7 2 1 10 10 C 1.44795 * 120.17995 * 25.57330 * 9 7 2 11 11 C 1.50952 * 112.54406 * 264.66206 * 10 9 7 12 12 C 1.51318 * 113.25015 * 285.43154 * 11 10 9 13 13 H 1.08992 * 111.31628 * 185.13870 * 12 11 10 14 14 C 1.54712 * 106.48200 * 307.57014 * 12 11 10 15 15 C 1.54248 * 104.37627 * 89.11269 * 14 12 11 16 16 C 1.50875 * 105.27006 * 11.56571 * 15 14 12 17 17 H 1.08994 * 105.89854 * 122.19905 * 16 15 14 18 18 C 1.49813 * 120.18353 * 205.84378 * 9 7 2 19 19 N 1.48065 * 109.90606 * 7.86885 * 16 15 14 20 20 C 1.34780 * 127.83619 * 155.17023 * 19 16 15 21 21 O 1.21627 * 120.00011 * 184.60557 * 20 19 16 22 22 C 1.47166 * 119.99826 * 4.59753 * 20 19 16 23 23 C 1.38396 * 126.88653 * 354.09804 * 22 20 19 24 24 C 1.39673 * 105.35886 * 179.91410 * 23 22 20 25 25 N 1.30859 * 107.86012 * 0.35080 * 24 23 22 26 26 N 1.28439 * 110.93019 * 359.77707 * 25 24 23 27 27 C 1.46499 * 125.19315 * 180.02562 * 26 25 24 28 28 C 1.53778 * 113.61665 * 43.12975 * 27 26 25 29 29 C 1.53955 * 87.02400 * 220.05171 * 28 27 26 30 30 C 1.53788 * 87.11081 * 25.36116 * 29 28 27 31 31 H 0.97003 * 119.99751 * 359.97438 * 1 2 3 32 32 H 1.08999 * 108.92581 * 25.25995 * 10 9 7 33 33 H 1.08996 * 108.93428 * 143.84151 * 10 9 7 34 34 H 1.09006 * 108.80662 * 164.40980 * 11 10 9 35 35 H 1.08998 * 108.55591 * 46.28696 * 11 10 9 36 36 H 1.08997 * 110.45341 * 207.83437 * 14 12 11 37 37 H 1.09003 * 110.45480 * 330.26558 * 14 12 11 38 38 H 1.08994 * 110.27845 * 252.61409 * 15 14 12 39 39 H 1.08999 * 110.27958 * 130.51327 * 15 14 12 40 40 H 1.08997 * 109.55082 * 270.55929 * 18 9 7 41 41 H 1.09002 * 109.54556 * 30.83941 * 18 9 7 42 42 H 1.08005 * 127.32630 * 359.97438 * 23 22 20 43 43 H 1.08007 * 126.06962 * 180.14478 * 24 23 22 44 44 H 1.09000 * 112.84841 * 174.33206 * 27 26 25 45 45 H 1.08998 * 113.61318 * 334.56906 * 28 27 26 46 46 H 1.09000 * 113.61552 * 105.46909 * 28 27 26 47 47 H 1.08999 * 113.53807 * 270.81517 * 29 28 27 48 48 H 1.08992 * 113.74712 * 139.93953 * 29 28 27 49 49 H 1.08992 * 113.61782 * 220.09346 * 30 29 28 50 50 H 1.09003 * 113.61100 * 89.18544 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0828 -1.2064 -0.1274 9 7 1.3344 -2.3829 0.1542 10 6 -0.0597 -2.4789 -0.2250 11 6 -0.9930 -2.2593 0.9409 12 6 -1.0527 -3.4375 1.8885 13 1 -1.8003 -3.2829 2.6664 14 6 -1.3629 -4.6817 1.0228 15 6 0.0234 -5.2064 0.5957 16 6 1.0138 -4.4503 1.4464 17 1 1.5813 -5.2071 1.9879 18 6 2.0317 -3.5810 0.7225 19 7 0.2967 -3.6587 2.4719 20 6 0.7618 -3.2349 3.6637 21 8 0.0191 -2.6608 4.4371 22 6 2.1684 -3.4667 4.0293 23 6 3.1025 -4.1974 3.3159 24 6 4.2799 -4.1227 4.0635 25 7 4.0329 -3.4073 5.1310 26 7 2.8120 -3.0087 5.1437 27 6 2.2028 -2.1875 6.1929 28 6 3.0966 -1.0287 6.6651 29 6 2.6138 -1.3441 8.0926 30 6 2.3547 -2.7792 7.6043 31 1 -0.4850 0.8401 0.0004 32 1 -0.2711 -1.7292 -0.9875 33 1 -0.2452 -3.4681 -0.6432 34 1 -1.9953 -2.0676 0.5575 35 1 -0.6569 -1.3821 1.4939 36 1 -1.8898 -5.4331 1.6108 37 1 -1.9516 -4.4009 0.1494 38 1 0.1967 -4.9994 -0.4603 39 1 0.0984 -6.2764 0.7892 40 1 2.4911 -4.1522 -0.0841 41 1 2.7996 -3.2569 1.4250 42 1 2.9531 -4.7146 2.3796 43 1 5.2255 -4.5777 3.8078 44 1 1.1836 -1.8837 5.9542 45 1 4.1610 -1.2089 6.5145 46 1 2.7757 -0.0530 6.3002 47 1 1.7072 -0.8083 8.3738 48 1 3.3978 -1.2744 8.8465 49 1 1.4357 -3.2146 7.9964 50 1 3.2159 -3.4388 7.7108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039375935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:47 Heat of formation + Delta-G solvation = 136.182146 kcal Electronic energy + Delta-G solvation = -33103.338513 eV Core-core repulsion = 29135.427175 eV Total energy + Delta-G solvation = -3967.911338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.36787 -40.19230 -38.41823 -37.66255 -34.67737 -33.14580 -31.60002 -31.43523 -30.58671 -29.99280 -27.21940 -25.97088 -25.77460 -25.25746 -23.89223 -23.01189 -21.95603 -20.91438 -20.80338 -19.56291 -18.87428 -18.60258 -17.20403 -16.62951 -16.25809 -15.71443 -15.52414 -15.43551 -14.95362 -14.68000 -14.26774 -14.01614 -13.69980 -13.29988 -13.21660 -13.01049 -12.76261 -12.72372 -12.58888 -12.39683 -12.24536 -12.03791 -11.41628 -11.38156 -11.22294 -11.03627 -10.95541 -10.82486 -10.70487 -10.66466 -10.58115 -10.38301 -10.27357 -10.05627 -9.95156 -9.71879 -9.48780 -9.13647 -8.88754 -8.62397 -8.35011 -7.97905 -6.62134 -5.70868 -3.19009 1.62158 2.58434 2.88942 3.36903 3.40286 3.45245 3.46956 3.70764 4.33527 4.46292 4.47832 4.63520 4.72711 4.81769 4.86949 5.01393 5.14422 5.20874 5.36675 5.39190 5.53558 5.54918 5.59597 5.66620 5.69332 5.74941 5.77899 5.82729 5.87234 5.91872 5.94126 6.04765 6.08272 6.13217 6.19175 6.24900 6.32865 6.41897 6.56956 6.61298 6.77495 6.78479 6.90980 7.04193 7.07154 7.25261 7.74155 7.84018 8.02841 8.11925 8.33487 8.49077 8.56322 9.32124 9.86298 10.39617 11.28363 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.005321 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.006308 B = 5260.810753 C = 6494.204363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.898 3.102 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.177 3.823 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.080 0.920 14 C -0.125 4.125 15 C -0.118 4.118 16 C 0.113 3.887 17 H 0.062 0.938 18 C 0.118 3.882 19 N -0.573 5.573 20 C 0.617 3.383 21 O -0.559 6.559 22 C -0.018 4.018 23 C -0.202 4.202 24 C -0.010 4.010 25 N -0.282 5.282 26 N -0.247 5.247 27 C 0.113 3.887 28 C -0.142 4.142 29 C -0.136 4.136 30 C -0.140 4.140 31 H 0.250 0.750 32 H 0.089 0.911 33 H 0.008 0.992 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.173 0.827 43 H 0.182 0.818 44 H 0.152 0.848 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.821 -10.555 7.896 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.052 3.948 11 C -0.172 4.172 12 C 0.031 3.969 13 H 0.098 0.902 14 C -0.163 4.163 15 C -0.156 4.156 16 C 0.009 3.991 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.304 5.304 20 C 0.405 3.595 21 O -0.439 6.439 22 C -0.147 4.147 23 C -0.230 4.230 24 C -0.186 4.186 25 N -0.115 5.115 26 N -0.034 5.034 27 C 0.012 3.988 28 C -0.180 4.180 29 C -0.174 4.174 30 C -0.178 4.178 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.026 0.974 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.084 0.916 42 H 0.190 0.810 43 H 0.199 0.801 44 H 0.169 0.831 45 H 0.115 0.885 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.795 -9.565 9.463 13.574 hybrid contribution 0.171 0.718 -0.737 1.043 sum 1.965 -8.847 8.726 12.581 Atomic orbital electron populations 1.70097 1.04891 1.24647 1.55066 1.25066 0.95626 0.97700 1.00876 0.86360 0.79162 0.84178 0.77520 1.21572 1.21691 1.20801 1.19151 0.91753 0.83484 1.42959 0.91630 1.44261 1.07974 1.07449 1.71753 1.20068 0.82485 0.96854 0.95417 1.21992 0.99687 0.96931 0.98593 1.22099 0.83039 0.96827 0.94964 0.90218 1.22611 0.96834 0.96925 0.99951 1.21863 0.94399 0.98253 1.01062 1.21619 0.94431 0.92749 0.90308 0.91983 1.22106 0.93889 0.89527 0.95253 1.48423 1.14866 1.52467 1.14668 1.16173 0.84439 0.78509 0.80346 1.90672 1.58402 1.44470 1.50363 1.21347 0.95494 1.05486 0.92335 1.22875 0.92709 1.04869 1.02551 1.23497 0.99871 1.02418 0.92772 1.72982 0.99142 1.15331 1.24008 1.45662 1.05814 1.35901 1.16001 1.23789 0.99711 0.91143 0.84163 1.23369 1.00897 0.97989 0.95724 1.22706 1.01940 0.96162 0.96547 1.23331 1.03050 0.97676 0.93722 0.93898 0.89287 0.97413 0.93554 0.88858 0.92209 0.89770 0.89209 0.91358 0.95071 0.91606 0.81032 0.80053 0.83068 0.88479 0.90367 0.89532 0.90394 0.90537 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.82 7.95 55.49 0.44 -24.38 16 2 C 0.00 0.13 5.39 -17.43 -0.09 0.03 16 3 Si 0.90 22.03 29.56 -169.99 -5.02 17.00 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.52 9.72 -15.06 -0.15 -6.67 16 8 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 9 N -0.59 -13.89 2.94 -173.55 -0.51 -14.40 16 10 C 0.18 3.96 4.49 -5.98 -0.03 3.93 16 11 C -0.13 -2.86 4.14 -28.61 -0.12 -2.98 16 12 C 0.13 2.47 3.85 -66.68 -0.26 2.21 16 13 H 0.08 1.51 7.97 -51.93 -0.41 1.10 16 14 C -0.12 -1.79 6.01 -25.18 -0.15 -1.94 16 15 C -0.12 -1.63 5.78 -27.14 -0.16 -1.78 16 16 C 0.11 1.86 1.94 -68.55 -0.13 1.73 16 17 H 0.06 0.90 5.43 -51.93 -0.28 0.62 16 18 C 0.12 2.25 5.36 -2.61 -0.01 2.24 16 19 N -0.57 -10.96 2.62 -158.73 -0.42 -11.38 16 20 C 0.62 12.78 7.86 -12.63 -0.10 12.68 16 21 O -0.56 -12.60 14.83 5.25 0.08 -12.53 16 22 C -0.02 -0.35 6.84 -82.06 -0.56 -0.91 16 23 C -0.20 -3.26 7.61 -38.99 -0.30 -3.56 16 24 C -0.01 -0.14 12.03 -17.43 -0.21 -0.35 16 25 N -0.28 -4.68 11.14 30.59 0.34 -4.34 16 26 N -0.25 -4.33 3.46 -49.91 -0.17 -4.51 16 27 C 0.11 1.76 4.42 -67.12 -0.30 1.47 16 28 C -0.14 -1.91 7.76 -25.83 -0.20 -2.11 16 29 C -0.14 -1.44 8.09 -25.82 -0.21 -1.65 16 30 C -0.14 -1.72 7.80 -25.91 -0.20 -1.92 16 31 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.09 2.30 6.12 -51.93 -0.32 1.99 16 33 H 0.01 0.16 3.93 -51.93 -0.20 -0.05 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 2.51 6.49 -51.93 -0.34 2.17 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.15 7.39 -51.93 -0.38 0.77 16 38 H 0.09 1.27 6.16 -51.93 -0.32 0.95 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.33 5.15 -51.93 -0.27 1.06 16 42 H 0.17 2.48 3.82 -52.48 -0.20 2.28 16 43 H 0.18 2.02 8.06 -52.48 -0.42 1.59 16 44 H 0.15 2.67 5.68 -51.93 -0.30 2.37 16 45 H 0.10 1.35 7.76 -51.93 -0.40 0.95 16 46 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 1.16 8.03 -51.93 -0.42 0.75 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -31.02 366.19 -10.11 -41.13 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.19 Total: 7.48 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -3.17 Total: 0.40 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.32 Total: -59.00 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.02 -10.11 -41.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039375935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.312 kcal (2) G-P(sol) polarization free energy of solvation -31.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds