Wall clock time and date at job start Wed Apr 1 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00004 * 2 1 4 4 H 1.48491 * 109.47355 * 270.00554 * 3 2 1 5 5 H 1.48505 * 109.46872 * 30.00830 * 3 2 1 6 6 H 1.48502 * 109.47093 * 150.00475 * 3 2 1 7 7 C 1.38805 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00541 * 172.20676 * 7 2 1 9 9 N 1.36934 * 119.99844 * 352.47475 * 7 2 1 10 10 C 1.44795 * 120.17995 * 25.57330 * 9 7 2 11 11 C 1.50952 * 112.54406 * 264.66206 * 10 9 7 12 12 C 1.51318 * 113.25015 * 285.43154 * 11 10 9 13 13 H 1.08992 * 111.31628 * 185.13870 * 12 11 10 14 14 C 1.54712 * 106.48200 * 307.57014 * 12 11 10 15 15 C 1.54248 * 104.37627 * 89.11269 * 14 12 11 16 16 C 1.50875 * 105.27006 * 11.56571 * 15 14 12 17 17 H 1.08994 * 105.89854 * 122.19905 * 16 15 14 18 18 C 1.49813 * 120.18353 * 205.84378 * 9 7 2 19 19 N 1.48065 * 109.90606 * 7.86885 * 16 15 14 20 20 C 1.34780 * 127.83619 * 155.17023 * 19 16 15 21 21 O 1.21627 * 120.00011 * 184.60557 * 20 19 16 22 22 C 1.47166 * 119.99826 * 4.59753 * 20 19 16 23 23 C 1.38396 * 126.88653 * 354.09804 * 22 20 19 24 24 C 1.39673 * 105.35886 * 179.91410 * 23 22 20 25 25 N 1.30859 * 107.86012 * 0.35080 * 24 23 22 26 26 N 1.28439 * 110.93019 * 359.77707 * 25 24 23 27 27 C 1.46499 * 125.19315 * 180.02562 * 26 25 24 28 28 C 1.53778 * 113.61665 * 43.12975 * 27 26 25 29 29 C 1.53955 * 87.02400 * 220.05171 * 28 27 26 30 30 C 1.53788 * 87.11081 * 25.36116 * 29 28 27 31 31 H 0.97003 * 119.99751 * 359.97438 * 1 2 3 32 32 H 1.08999 * 108.92581 * 25.25995 * 10 9 7 33 33 H 1.08996 * 108.93428 * 143.84151 * 10 9 7 34 34 H 1.09006 * 108.80662 * 164.40980 * 11 10 9 35 35 H 1.08998 * 108.55591 * 46.28696 * 11 10 9 36 36 H 1.08997 * 110.45341 * 207.83437 * 14 12 11 37 37 H 1.09003 * 110.45480 * 330.26558 * 14 12 11 38 38 H 1.08994 * 110.27845 * 252.61409 * 15 14 12 39 39 H 1.08999 * 110.27958 * 130.51327 * 15 14 12 40 40 H 1.08997 * 109.55082 * 270.55929 * 18 9 7 41 41 H 1.09002 * 109.54556 * 30.83941 * 18 9 7 42 42 H 1.08005 * 127.32630 * 359.97438 * 23 22 20 43 43 H 1.08007 * 126.06962 * 180.14478 * 24 23 22 44 44 H 1.09000 * 112.84841 * 174.33206 * 27 26 25 45 45 H 1.08998 * 113.61318 * 334.56906 * 28 27 26 46 46 H 1.09000 * 113.61552 * 105.46909 * 28 27 26 47 47 H 1.08999 * 113.53807 * 270.81517 * 29 28 27 48 48 H 1.08992 * 113.74712 * 139.93953 * 29 28 27 49 49 H 1.08992 * 113.61782 * 220.09346 * 30 29 28 50 50 H 1.09003 * 113.61100 * 89.18544 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0828 -1.2064 -0.1274 9 7 1.3344 -2.3829 0.1542 10 6 -0.0597 -2.4789 -0.2250 11 6 -0.9930 -2.2593 0.9409 12 6 -1.0527 -3.4375 1.8885 13 1 -1.8003 -3.2829 2.6664 14 6 -1.3629 -4.6817 1.0228 15 6 0.0234 -5.2064 0.5957 16 6 1.0138 -4.4503 1.4464 17 1 1.5813 -5.2071 1.9879 18 6 2.0317 -3.5810 0.7225 19 7 0.2967 -3.6587 2.4719 20 6 0.7618 -3.2349 3.6637 21 8 0.0191 -2.6608 4.4371 22 6 2.1684 -3.4667 4.0293 23 6 3.1025 -4.1974 3.3159 24 6 4.2799 -4.1227 4.0635 25 7 4.0329 -3.4073 5.1310 26 7 2.8120 -3.0087 5.1437 27 6 2.2028 -2.1875 6.1929 28 6 3.0966 -1.0287 6.6651 29 6 2.6138 -1.3441 8.0926 30 6 2.3547 -2.7792 7.6043 31 1 -0.4850 0.8401 0.0004 32 1 -0.2711 -1.7292 -0.9875 33 1 -0.2452 -3.4681 -0.6432 34 1 -1.9953 -2.0676 0.5575 35 1 -0.6569 -1.3821 1.4939 36 1 -1.8898 -5.4331 1.6108 37 1 -1.9516 -4.4009 0.1494 38 1 0.1967 -4.9994 -0.4603 39 1 0.0984 -6.2764 0.7892 40 1 2.4911 -4.1522 -0.0841 41 1 2.7996 -3.2569 1.4250 42 1 2.9531 -4.7146 2.3796 43 1 5.2255 -4.5777 3.8078 44 1 1.1836 -1.8837 5.9542 45 1 4.1610 -1.2089 6.5145 46 1 2.7757 -0.0530 6.3002 47 1 1.7072 -0.8083 8.3738 48 1 3.3978 -1.2744 8.8465 49 1 1.4357 -3.2146 7.9964 50 1 3.2159 -3.4388 7.7108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039375935.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:46 Heat of formation + Delta-G solvation = 118.279905 kcal Electronic energy + Delta-G solvation = -33104.114813 eV Core-core repulsion = 29135.427175 eV Total energy + Delta-G solvation = -3968.687638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.63501 -41.63408 -39.50655 -39.21273 -36.47967 -34.61964 -33.20887 -32.69203 -32.27965 -31.34006 -28.93263 -27.44268 -26.81487 -26.43243 -25.60555 -24.57215 -23.22025 -22.28955 -22.07861 -21.06156 -20.29495 -19.85734 -18.71138 -18.35189 -17.70439 -17.16509 -16.95485 -16.60804 -16.38937 -16.26750 -15.78684 -15.47181 -15.10920 -14.89900 -14.77513 -14.39642 -14.28733 -13.97912 -13.74489 -13.64830 -13.56656 -13.31038 -13.11492 -12.90277 -12.86565 -12.67702 -12.39879 -12.25925 -12.07132 -12.02123 -11.91453 -11.80491 -11.74142 -11.65743 -11.54478 -11.39044 -10.98413 -10.82831 -10.24839 -10.21464 -9.89118 -9.50338 -8.52201 -7.77076 -5.23428 0.24551 1.29943 1.37125 1.40751 1.46315 1.67962 2.01210 2.26127 2.47181 3.23422 3.26380 3.37118 3.43210 3.56526 3.67908 3.71375 3.85455 3.87298 3.92158 4.10830 4.18870 4.30325 4.31969 4.48930 4.53043 4.57713 4.61963 4.67521 4.71965 4.78326 4.79407 4.80697 4.85818 4.90762 4.93229 5.00682 5.06820 5.09399 5.23983 5.28080 5.32453 5.35241 5.47577 5.54808 5.60509 5.66033 5.79933 5.93374 6.26550 6.46338 6.57014 6.98023 7.14080 7.28336 7.98306 8.40309 9.18555 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.005321 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.006308 B = 5260.810753 C = 6494.204363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.045 4.045 3 Si 0.945 3.055 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.283 1.283 7 C -0.248 4.248 8 H 0.062 0.938 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.115 4.115 12 C 0.127 3.873 13 H 0.066 0.934 14 C -0.113 4.113 15 C -0.112 4.112 16 C 0.109 3.891 17 H 0.092 0.908 18 C 0.116 3.884 19 N -0.577 5.577 20 C 0.603 3.397 21 O -0.595 6.595 22 C -0.055 4.055 23 C -0.191 4.191 24 C -0.007 4.007 25 N -0.289 5.289 26 N -0.254 5.254 27 C 0.090 3.910 28 C -0.142 4.142 29 C -0.116 4.116 30 C -0.127 4.127 31 H 0.240 0.760 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.190 0.810 43 H 0.223 0.777 44 H 0.123 0.877 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.082 0.918 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -13.602 8.003 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.241 4.241 3 Si 0.776 3.224 4 H -0.208 1.208 5 H -0.229 1.229 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.080 0.920 9 N -0.331 5.331 10 C 0.060 3.940 11 C -0.156 4.156 12 C 0.025 3.975 13 H 0.084 0.916 14 C -0.151 4.151 15 C -0.150 4.150 16 C 0.006 3.994 17 H 0.109 0.891 18 C -0.008 4.008 19 N -0.306 5.306 20 C 0.392 3.608 21 O -0.478 6.478 22 C -0.183 4.183 23 C -0.220 4.220 24 C -0.182 4.182 25 N -0.121 5.121 26 N -0.042 5.042 27 C -0.010 4.010 28 C -0.181 4.181 29 C -0.153 4.153 30 C -0.165 4.165 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.207 0.793 43 H 0.239 0.761 44 H 0.141 0.859 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.115 0.885 48 H 0.121 0.879 49 H 0.101 0.899 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.198 -12.645 9.548 16.164 hybrid contribution -0.216 1.662 -0.797 1.856 sum 2.982 -10.983 8.751 14.356 Atomic orbital electron populations 1.70306 1.05531 1.24066 1.56235 1.25625 0.96354 1.00019 1.02062 0.85591 0.77864 0.81484 0.77479 1.20790 1.22929 1.20875 1.19355 0.91749 0.84952 1.41858 0.92023 1.44448 1.08332 1.07840 1.72484 1.19912 0.82253 0.97374 0.94484 1.21738 0.99226 0.96235 0.98408 1.22093 0.83072 0.97888 0.94482 0.91554 1.22566 0.97841 0.95094 0.99648 1.21942 0.92519 1.00220 1.00296 1.21807 0.94979 0.92465 0.90176 0.89075 1.22266 0.94220 0.88417 0.95901 1.48573 1.15282 1.52160 1.14635 1.16643 0.85263 0.78174 0.80686 1.90639 1.59499 1.46014 1.51635 1.21407 0.95186 1.07714 0.93970 1.23132 0.92378 1.03774 1.02695 1.24198 1.00943 1.01410 0.91654 1.72981 0.98669 1.15619 1.24869 1.45866 1.06070 1.36146 1.16084 1.23951 0.98842 0.92796 0.85457 1.23383 1.00216 0.96678 0.97796 1.22685 1.02946 0.94545 0.95173 1.23278 1.03356 0.98675 0.91228 0.95020 0.93393 0.93638 0.93640 0.94693 0.89471 0.88861 0.89106 0.87086 0.92304 0.92832 0.79283 0.76079 0.85918 0.88803 0.91388 0.88508 0.87919 0.89927 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.84 7.95 21.65 0.17 -52.67 16 2 C -0.05 -2.56 5.39 84.86 0.46 -2.10 16 3 Si 0.95 46.76 29.56 68.60 2.03 48.78 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 5 H -0.30 -15.38 7.11 99.48 0.71 -14.67 16 6 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.25 -13.49 9.72 84.03 0.82 -12.68 16 8 H 0.06 3.33 7.84 -2.91 -0.02 3.30 16 9 N -0.61 -28.45 2.94 -702.98 -2.06 -30.52 16 10 C 0.19 8.30 4.49 86.03 0.39 8.68 16 11 C -0.12 -5.16 4.14 29.38 0.12 -5.04 16 12 C 0.13 4.69 3.85 44.61 0.17 4.86 16 13 H 0.07 2.59 7.97 -2.39 -0.02 2.57 16 14 C -0.11 -2.87 6.01 31.60 0.19 -2.68 16 15 C -0.11 -2.56 5.78 30.33 0.18 -2.39 16 16 C 0.11 3.25 1.94 43.73 0.08 3.34 16 17 H 0.09 2.24 5.43 -2.39 -0.01 2.23 16 18 C 0.12 4.19 5.36 85.46 0.46 4.65 16 19 N -0.58 -21.77 2.62 -774.35 -2.03 -23.80 16 20 C 0.60 25.59 7.86 86.59 0.68 26.27 16 21 O -0.59 -28.44 14.83 -4.12 -0.06 -28.50 16 22 C -0.06 -2.07 6.84 40.78 0.28 -1.79 16 23 C -0.19 -5.81 7.61 22.65 0.17 -5.64 16 24 C -0.01 -0.18 12.03 85.18 1.02 0.84 16 25 N -0.29 -9.22 11.14 -57.14 -0.64 -9.86 16 26 N -0.25 -8.98 3.46 -311.81 -1.08 -10.06 16 27 C 0.09 2.91 4.42 45.52 0.20 3.11 16 28 C -0.14 -3.89 7.76 31.18 0.24 -3.64 16 29 C -0.12 -2.32 8.09 31.18 0.25 -2.06 16 30 C -0.13 -3.05 7.80 31.13 0.24 -2.81 16 31 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 32 H 0.05 2.55 6.12 -2.39 -0.01 2.53 16 33 H 0.05 1.69 3.93 -2.39 -0.01 1.68 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.03 1.98 6.49 -2.39 -0.02 1.96 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 2.23 7.39 -2.39 -0.02 2.22 16 38 H 0.09 2.11 6.16 -2.39 -0.01 2.10 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.05 2.07 5.15 -2.39 -0.01 2.06 16 42 H 0.19 4.84 3.82 -2.91 -0.01 4.83 16 43 H 0.22 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.12 4.67 5.68 -2.39 -0.01 4.66 16 45 H 0.09 2.60 7.76 -2.39 -0.02 2.58 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 50 H 0.09 2.24 8.03 -2.39 -0.02 2.22 16 Total: -1.00 -73.17 366.19 3.26 -69.91 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.97 Total: 25.78 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.96 Total: 10.93 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -5.64 Total: -126.90 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.06 Total: -28.50 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -73.17 3.26 -69.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039375935.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.187 kcal (2) G-P(sol) polarization free energy of solvation -73.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds