Wall clock time and date at job start Wed Apr 1 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48501 * 109.47154 * 269.99661 * 3 2 1 5 5 H 1.48493 * 109.47014 * 29.99739 * 3 2 1 6 6 H 1.48503 * 109.46971 * 149.99888 * 3 2 1 7 7 C 1.38816 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00078 * 190.29570 * 7 2 1 9 9 N 1.36935 * 119.99666 * 10.30723 * 7 2 1 10 10 C 1.44904 * 120.24087 * 204.34695 * 9 7 2 11 11 C 1.51657 * 112.60558 * 265.53548 * 10 9 7 12 12 C 1.51493 * 113.13046 * 285.36110 * 11 10 9 13 13 H 1.09005 * 111.52850 * 184.33687 * 12 11 10 14 14 C 1.54618 * 107.63276 * 307.03656 * 12 11 10 15 15 C 1.54347 * 103.01050 * 81.50272 * 14 12 11 16 16 C 1.52275 * 104.70846 * 23.93988 * 15 14 12 17 17 H 1.08994 * 108.73177 * 113.09175 * 16 15 14 18 18 C 1.53043 * 112.66935 * 233.67999 * 16 15 14 19 19 N 1.47917 * 109.56691 * 354.44776 * 16 15 14 20 20 C 1.34780 * 127.29559 * 164.43923 * 19 16 15 21 21 O 1.21275 * 120.00033 * 354.20260 * 20 19 16 22 22 C 1.50698 * 119.99885 * 174.21007 * 20 19 16 23 23 H 1.08998 * 109.71863 * 320.28257 * 22 20 19 24 24 C 1.53444 * 109.72197 * 199.66090 * 22 20 19 25 25 C 1.53170 * 109.17892 * 191.79637 * 24 22 20 26 26 C 1.53238 * 109.60208 * 69.37120 * 25 24 22 27 27 N 1.46595 * 108.80082 * 309.45328 * 26 25 24 28 28 N 1.39652 * 127.54568 * 197.34378 * 27 26 25 29 29 C 1.31033 * 108.12539 * 179.90009 * 28 27 26 30 30 C 1.40061 * 108.25062 * 0.02562 * 29 28 27 31 31 C 1.34743 * 107.79975 * 0.02562 * 30 29 28 32 32 H 0.96997 * 119.99737 * 0.02562 * 1 2 3 33 33 H 1.08994 * 108.85885 * 144.72699 * 10 9 7 34 34 H 1.09000 * 108.84879 * 26.33951 * 10 9 7 35 35 H 1.08996 * 108.75515 * 164.41445 * 11 10 9 36 36 H 1.09003 * 108.75574 * 46.30256 * 11 10 9 37 37 H 1.09004 * 110.70329 * 323.12184 * 14 12 11 38 38 H 1.08998 * 110.70901 * 199.88519 * 14 12 11 39 39 H 1.09004 * 110.39219 * 265.12754 * 15 14 12 40 40 H 1.08999 * 110.48763 * 142.79571 * 15 14 12 41 41 H 1.09000 * 109.59734 * 186.01145 * 18 16 15 42 42 H 1.09003 * 109.59258 * 306.47404 * 18 16 15 43 43 H 1.09002 * 109.51988 * 311.67449 * 24 22 20 44 44 H 1.09004 * 109.51354 * 71.84190 * 24 22 20 45 45 H 1.09005 * 109.43002 * 309.33591 * 25 24 22 46 46 H 1.09000 * 109.43555 * 189.40734 * 25 24 22 47 47 H 1.09000 * 109.58774 * 189.65675 * 26 25 24 48 48 H 1.08996 * 109.58406 * 69.24385 * 26 25 24 49 49 H 1.07994 * 125.87180 * 179.97438 * 29 28 27 50 50 H 1.08004 * 126.09601 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0773 -1.2096 0.1677 9 7 1.3421 -2.3786 -0.2111 10 6 1.8858 -3.6263 0.2861 11 6 2.7104 -4.3588 -0.7547 12 6 1.8664 -5.0224 -1.8235 13 1 2.4787 -5.6034 -2.5133 14 6 0.8182 -5.9073 -1.1102 15 6 -0.2809 -4.8969 -0.7187 16 6 -0.1154 -3.7455 -1.7013 17 1 -0.9899 -3.7112 -2.3509 18 6 0.0317 -2.3912 -1.0038 19 7 1.0850 -3.9743 -2.5348 20 6 1.4085 -3.3561 -3.6880 21 8 0.6270 -2.5844 -4.2022 22 6 2.7412 -3.6240 -4.3384 23 1 3.5157 -3.6940 -3.5747 24 6 3.0780 -2.4896 -5.3153 25 6 4.2717 -2.9075 -6.1794 26 6 3.8469 -4.0266 -7.1362 27 7 3.1743 -5.0769 -6.3658 28 7 2.9292 -6.3948 -6.7572 29 6 2.3069 -7.0022 -5.7770 30 6 2.1369 -6.0862 -4.7311 31 6 2.6766 -4.9139 -5.1184 32 1 -0.4849 0.8400 -0.0004 33 1 1.0631 -4.2689 0.5998 34 1 2.5155 -3.4163 1.1507 35 1 3.3072 -5.1220 -0.2554 36 1 3.3844 -3.6474 -1.2321 37 1 1.2470 -6.3734 -0.2230 38 1 0.4235 -6.6618 -1.7906 39 1 -0.1302 -4.5487 0.3032 40 1 -1.2680 -5.3470 -0.8239 41 1 0.0394 -1.5953 -1.7485 42 1 -0.8000 -2.2425 -0.3152 43 1 2.2176 -2.2920 -5.9546 44 1 3.3307 -1.5895 -4.7548 45 1 5.0767 -3.2650 -5.5373 46 1 4.6202 -2.0503 -6.7554 47 1 4.7272 -4.4409 -7.6277 48 1 3.1623 -3.6272 -7.8845 49 1 1.9804 -8.0316 -5.7761 50 1 1.6585 -6.2843 -3.7833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039396753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:16 Heat of formation + Delta-G solvation = 99.936072 kcal Electronic energy + Delta-G solvation = -33095.135359 eV Core-core repulsion = 29125.652273 eV Total energy + Delta-G solvation = -3969.483086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.73464 -40.23904 -38.11580 -36.17845 -34.43541 -32.96837 -32.24956 -31.17804 -30.86145 -30.29316 -28.32983 -27.09712 -25.66588 -24.93430 -23.76450 -22.39815 -21.78816 -21.30770 -20.68423 -19.54427 -19.03148 -18.15083 -17.54817 -16.58753 -16.29846 -15.86760 -15.49593 -15.07895 -14.76976 -14.54195 -14.33585 -14.12420 -13.83527 -13.75518 -13.39411 -13.18496 -12.87013 -12.78940 -12.50717 -12.29547 -12.21947 -12.07639 -11.64062 -11.54850 -11.44988 -11.25011 -11.16117 -11.07470 -10.95852 -10.81882 -10.69476 -10.63864 -10.37348 -10.10928 -10.03337 -9.69387 -9.56250 -9.10769 -9.01130 -8.54279 -8.49081 -8.00942 -6.64873 -5.71064 -3.12813 1.81009 2.39219 2.79059 3.06001 3.39449 3.41019 3.45914 3.47463 4.25168 4.46298 4.50390 4.52420 4.57449 4.80416 4.83344 4.95285 5.05103 5.15439 5.20338 5.24900 5.34060 5.38425 5.44162 5.50154 5.52996 5.57944 5.60130 5.67374 5.74501 5.76775 5.95165 5.97620 6.03517 6.09958 6.11720 6.18082 6.20753 6.36225 6.46828 6.54908 6.62160 6.63942 6.74529 6.78368 6.92455 7.07381 7.49150 7.64460 7.69433 7.83142 8.10125 8.43352 8.64922 9.19310 9.89169 10.45416 11.38649 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012536 B = 0.004687 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.092810 B = 5972.882866 C = 7328.723864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.006 3.994 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.062 0.938 9 N -0.592 5.592 10 C 0.134 3.866 11 C -0.158 4.158 12 C 0.121 3.879 13 H 0.092 0.908 14 C -0.126 4.126 15 C -0.135 4.135 16 C 0.115 3.885 17 H 0.065 0.935 18 C 0.174 3.826 19 N -0.588 5.588 20 C 0.555 3.445 21 O -0.537 6.537 22 C -0.041 4.041 23 H 0.113 0.887 24 C -0.113 4.113 25 C -0.135 4.135 26 C 0.132 3.868 27 N -0.365 5.365 28 N -0.297 5.297 29 C 0.045 3.955 30 C -0.273 4.273 31 C 0.103 3.897 32 H 0.252 0.748 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.084 0.916 49 H 0.183 0.817 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.078 -13.518 -7.913 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.316 5.316 10 C 0.006 3.994 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.109 0.891 14 C -0.164 4.164 15 C -0.172 4.172 16 C 0.011 3.989 17 H 0.084 0.916 18 C 0.051 3.949 19 N -0.321 5.321 20 C 0.342 3.658 21 O -0.414 6.414 22 C -0.064 4.064 23 H 0.130 0.870 24 C -0.151 4.151 25 C -0.173 4.173 26 C 0.011 3.989 27 N -0.149 5.149 28 N -0.118 5.118 29 C -0.141 4.141 30 C -0.302 4.302 31 C -0.025 4.025 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.110 0.890 48 H 0.102 0.898 49 H 0.200 0.800 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.101 -12.899 -9.545 17.167 hybrid contribution 0.303 1.012 0.719 1.278 sum 6.404 -11.886 -8.826 16.130 Atomic orbital electron populations 1.69947 1.05084 1.25181 1.54942 1.24960 0.95325 0.97907 1.01069 0.86340 0.78955 0.84187 0.77557 1.21670 1.21753 1.20660 1.19087 0.90683 0.84367 1.43603 0.92043 1.44906 1.24265 1.01397 1.61066 1.20602 0.96256 0.89025 0.93484 1.22248 0.99444 0.99645 0.98648 1.22146 0.93712 0.88704 0.93627 0.89071 1.22572 0.96266 0.97171 1.00393 1.22564 0.98348 0.94977 1.01299 1.22041 0.87213 0.97762 0.91855 0.91648 1.22163 0.88276 0.90719 0.93747 1.48823 1.23245 1.38803 1.21227 1.19207 0.87131 0.80070 0.79400 1.90688 1.51125 1.36403 1.63198 1.20117 0.97830 0.91155 0.97319 0.86964 1.21584 0.98501 0.97398 0.97592 1.21984 0.98973 0.97877 0.98462 1.21835 0.97398 0.85563 0.94098 1.48671 1.45367 1.08924 1.11915 1.77243 1.21954 0.89162 1.23469 1.23878 0.98549 1.00257 0.91378 1.21366 1.12875 0.92767 1.03223 1.20534 0.98609 0.96067 0.87307 0.93773 0.92528 0.93818 0.92429 0.92380 0.89963 0.91538 0.87876 0.91466 0.91572 0.92875 0.89638 0.89365 0.90530 0.88533 0.89020 0.89818 0.80033 0.82783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.33 10.82 55.49 0.60 -25.73 16 2 C 0.01 0.16 5.18 -17.43 -0.09 0.07 16 3 Si 0.90 22.04 29.57 -169.99 -5.03 17.01 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.65 9.64 -15.06 -0.15 -6.79 16 8 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 9 N -0.59 -14.00 3.00 -169.53 -0.51 -14.51 16 10 C 0.13 2.51 5.36 -5.58 -0.03 2.48 16 11 C -0.16 -2.45 5.15 -28.17 -0.15 -2.60 16 12 C 0.12 1.70 2.26 -66.55 -0.15 1.54 16 13 H 0.09 1.14 4.87 -51.93 -0.25 0.89 16 14 C -0.13 -1.49 6.07 -25.17 -0.15 -1.65 16 15 C -0.13 -1.94 5.76 -26.40 -0.15 -2.09 16 16 C 0.11 2.13 2.90 -67.50 -0.20 1.93 16 17 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 18 C 0.17 4.10 4.41 -0.20 0.00 4.10 16 19 N -0.59 -10.27 2.46 -156.05 -0.38 -10.66 16 20 C 0.56 10.49 6.62 -10.98 -0.07 10.42 16 21 O -0.54 -12.25 16.19 5.56 0.09 -12.16 16 22 C -0.04 -0.62 2.21 -92.61 -0.20 -0.83 16 23 H 0.11 1.61 7.66 -51.93 -0.40 1.21 16 24 C -0.11 -1.53 4.99 -26.41 -0.13 -1.66 16 25 C -0.13 -1.29 5.93 -26.52 -0.16 -1.45 16 26 C 0.13 1.36 7.28 -3.87 -0.03 1.33 16 27 N -0.37 -5.00 4.04 -56.95 -0.23 -5.23 16 28 N -0.30 -4.25 12.62 30.70 0.39 -3.87 16 29 C 0.04 0.56 12.03 -17.21 -0.21 0.36 16 30 C -0.27 -3.69 9.04 -40.14 -0.36 -4.06 16 31 C 0.10 1.47 6.04 -82.22 -0.50 0.98 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 0.97 3.46 -51.93 -0.18 0.79 16 34 H 0.04 0.85 7.97 -51.93 -0.41 0.44 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 37 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 38 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.10 1.60 4.94 -51.93 -0.26 1.34 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.85 7.31 -51.93 -0.38 1.47 16 42 H 0.05 1.35 7.63 -51.93 -0.40 0.95 16 43 H 0.08 1.30 7.46 -51.93 -0.39 0.91 16 44 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 50 H 0.15 1.94 5.24 -52.48 -0.28 1.67 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -33.64 370.63 -9.74 -43.38 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.53 Total: 4.09 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.72 Total: 2.09 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: -0.13 Total: -59.99 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.64 -9.74 -43.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039396753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.311 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds