Wall clock time and date at job start Wed Apr 1 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47206 * 274.33615 * 3 2 1 5 5 H 1.48502 * 109.47010 * 34.33378 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.33349 * 3 2 1 7 7 C 1.38815 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00398 * 162.48448 * 7 2 1 9 9 N 1.36942 * 119.99778 * 342.48563 * 7 2 1 10 10 C 1.46933 * 120.56041 * 152.05647 * 9 7 2 11 11 C 1.53320 * 108.69733 * 125.78334 * 10 9 7 12 12 C 1.52278 * 109.41531 * 53.52460 * 11 10 9 13 13 C 1.54516 * 110.20731 * 177.79064 * 12 11 10 14 14 C 1.55239 * 101.43540 * 206.61358 * 13 12 11 15 15 N 1.47477 * 104.79513 * 36.66031 * 14 13 12 16 16 C 1.34777 * 125.66445 * 155.92542 * 15 14 13 17 17 O 1.21283 * 120.00567 * 179.69545 * 16 15 14 18 18 C 1.50705 * 119.99393 * 359.42213 * 16 15 14 19 19 H 1.08999 * 115.55193 * 34.69289 * 18 16 15 20 20 C 1.52999 * 117.50144 * 249.01470 * 18 16 15 21 21 C 1.53003 * 117.49487 * 180.36017 * 18 16 15 22 22 H 1.08997 * 117.50272 * 359.97438 * 21 18 16 23 23 C 1.50697 * 117.49867 * 214.98201 * 21 18 16 24 24 C 1.34677 * 126.59030 * 325.02359 * 23 21 18 25 25 N 1.34128 * 108.01929 * 179.97438 * 24 23 21 26 26 C 1.30502 * 109.25855 * 0.02562 * 25 24 23 27 27 N 1.35043 * 108.69556 * 359.76660 * 26 25 24 28 28 H 0.97009 * 126.39226 * 180.26555 * 27 26 25 29 29 C 1.47176 * 108.67690 * 335.66827 * 15 14 13 30 30 C 1.52276 * 111.27046 * 300.35275 * 12 11 10 31 31 C 1.46922 * 120.56274 * 332.08151 * 9 7 2 32 32 H 0.97005 * 119.99399 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.60443 * 6.02117 * 10 9 7 34 34 H 1.09006 * 109.72925 * 245.61701 * 10 9 7 35 35 H 1.09003 * 109.47317 * 293.54410 * 11 10 9 36 36 H 1.08994 * 109.49261 * 173.51527 * 11 10 9 37 37 H 1.08997 * 111.01478 * 324.83892 * 13 12 11 38 38 H 1.09000 * 111.01390 * 88.71882 * 13 12 11 39 39 H 1.09000 * 110.48305 * 277.80396 * 14 13 12 40 40 H 1.09002 * 110.33148 * 155.44992 * 14 13 12 41 41 H 1.09004 * 117.49387 * 0.02562 * 20 18 16 42 42 H 1.08999 * 117.50050 * 144.99764 * 20 18 16 43 43 H 1.07999 * 125.98662 * 359.96216 * 24 23 21 44 44 H 1.08001 * 125.64785 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.90864 * 121.09878 * 29 15 14 46 46 H 1.08997 * 109.90839 * 242.17211 * 29 15 14 47 47 H 1.08993 * 109.48001 * 179.61897 * 30 12 11 48 48 H 1.09006 * 109.47896 * 299.65402 * 30 12 11 49 49 H 1.09000 * 109.59901 * 353.97549 * 31 9 7 50 50 H 1.08999 * 109.60209 * 114.28564 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4061 2.0993 -1.3961 5 1 1.4965 2.6244 0.7897 6 1 3.5906 1.4153 0.6064 7 6 2.0103 -1.2022 0.0005 8 1 3.0527 -1.2240 -0.2809 9 7 1.3732 -2.3605 0.3580 10 6 1.8166 -3.6537 -0.1803 11 6 2.0930 -4.6046 0.9902 12 6 0.8681 -4.6658 1.8928 13 6 1.1066 -5.6622 3.0494 14 6 -0.3450 -6.0998 3.3830 15 7 -1.0307 -6.1554 2.0785 16 6 -2.1212 -6.8949 1.7949 17 8 -2.6064 -6.8586 0.6839 18 6 -2.7340 -7.7715 2.8566 19 1 -2.6884 -7.3806 3.8730 20 6 -2.6167 -9.2863 2.6763 21 6 -3.9656 -8.5929 2.4701 22 1 -4.3329 -8.4990 1.4482 23 6 -5.0226 -8.8000 3.5241 24 6 -4.8185 -8.9547 4.8463 25 7 -6.0134 -9.1113 5.4351 26 6 -6.9502 -9.0601 4.5280 27 7 -6.3750 -8.8623 3.3223 28 1 -6.8345 -8.7807 2.4718 29 6 -0.3301 -5.2646 1.1394 30 6 0.5208 -3.2905 2.4467 31 6 0.2343 -2.3310 1.2857 32 1 -0.4849 0.8401 -0.0004 33 1 2.7281 -3.5148 -0.7615 34 1 1.0376 -4.0740 -0.8166 35 1 2.9472 -4.2397 1.5608 36 1 2.3114 -5.6008 0.6058 37 1 1.7074 -6.5091 2.7181 38 1 1.5695 -5.1668 3.9029 39 1 -0.8245 -5.3674 4.0324 40 1 -0.3454 -7.0829 3.8538 41 1 -2.0959 -9.6488 1.7900 42 1 -2.4938 -9.8920 3.5742 43 1 -3.8605 -8.9531 5.3449 44 1 -8.0102 -9.1557 4.7118 45 1 0.0198 -5.8342 0.2785 46 1 -1.0004 -4.4703 0.8112 47 1 -0.3619 -3.3666 3.0816 48 1 1.3587 -2.9123 3.0325 49 1 0.1027 -1.3199 1.6711 50 1 -0.6703 -2.6440 0.7644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040731788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:26 Heat of formation + Delta-G solvation = 73.519397 kcal Electronic energy + Delta-G solvation = -30378.104343 eV Core-core repulsion = 26407.475744 eV Total energy + Delta-G solvation = -3970.628599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.39111 -40.48429 -38.95835 -36.67031 -35.81334 -33.13652 -32.80005 -31.13177 -30.01099 -29.61110 -29.29115 -27.10156 -25.11320 -23.76066 -23.41429 -22.77903 -22.22172 -21.92289 -20.70804 -20.69238 -18.98351 -18.44953 -18.19669 -17.12811 -16.47148 -16.05629 -15.57682 -15.25768 -14.92840 -14.87092 -14.56833 -14.01150 -13.97948 -13.82762 -13.76939 -13.39421 -13.19861 -13.12582 -12.86631 -12.41583 -12.32016 -12.25724 -12.03402 -11.63818 -11.38637 -11.31561 -11.19504 -10.96525 -10.87652 -10.70770 -10.48077 -10.31393 -10.29780 -10.23689 -10.17858 -9.87030 -9.81591 -9.52703 -9.39815 -8.57629 -8.54320 -8.43148 -6.65761 -5.78684 -3.20695 1.58650 2.46202 2.68684 2.82171 3.04377 3.36888 3.44406 3.46498 3.69952 4.14736 4.39219 4.41205 4.49595 4.51500 4.66016 4.67852 4.80092 4.94398 5.01593 5.03317 5.20223 5.33377 5.33862 5.36580 5.41351 5.49368 5.55547 5.64116 5.65324 5.72559 5.91809 5.97734 5.98195 6.05576 6.10289 6.23275 6.29087 6.32166 6.37963 6.46937 6.59436 6.64828 6.74521 6.83793 6.97451 7.02532 7.34842 7.59086 7.66077 7.72936 7.79782 8.19136 8.45290 9.21481 9.85274 10.41780 11.29628 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.002239 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.540049 B =12503.512181 C =13048.602752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.143 3.857 11 C -0.117 4.117 12 C -0.055 4.055 13 C -0.127 4.127 14 C 0.100 3.900 15 N -0.609 5.609 16 C 0.554 3.446 17 O -0.543 6.543 18 C -0.166 4.166 19 H 0.128 0.872 20 C -0.131 4.131 21 C -0.058 4.058 22 H 0.125 0.875 23 C 0.013 3.987 24 C -0.023 4.023 25 N -0.493 5.493 26 C 0.183 3.817 27 N -0.564 5.564 28 H 0.421 0.579 29 C 0.118 3.882 30 C -0.127 4.127 31 C 0.169 3.831 32 H 0.253 0.747 33 H 0.054 0.946 34 H 0.018 0.982 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.168 0.832 44 H 0.209 0.791 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.088 0.912 50 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -20.068 9.365 23.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.157 4.157 12 C -0.056 4.056 13 C -0.165 4.165 14 C -0.023 4.023 15 N -0.342 5.342 16 C 0.342 3.658 17 O -0.421 6.421 18 C -0.188 4.188 19 H 0.146 0.854 20 C -0.169 4.169 21 C -0.078 4.078 22 H 0.143 0.857 23 C -0.103 4.103 24 C -0.171 4.171 25 N -0.212 5.212 26 C -0.100 4.100 27 N -0.167 5.167 28 H 0.259 0.741 29 C -0.004 4.004 30 C -0.166 4.166 31 C 0.044 3.956 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.185 0.815 44 H 0.226 0.774 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -7.615 -20.042 9.630 23.503 hybrid contribution 0.191 1.184 -1.173 1.677 sum -7.424 -18.857 8.457 21.960 Atomic orbital electron populations 1.70043 1.05267 1.25456 1.53876 1.25041 0.95250 0.98419 1.01007 0.86313 0.79217 0.83826 0.77610 1.21497 1.21597 1.20447 1.19174 0.92715 0.84904 1.41326 0.91723 1.44036 1.36299 1.01361 1.49634 1.20950 0.97659 0.87052 0.92738 1.21917 0.96204 0.99223 0.98341 1.20974 0.94561 0.95461 0.94610 1.22924 0.94876 0.99338 0.99373 1.22439 0.93185 1.01236 0.85469 1.48493 1.28003 1.44099 1.13597 1.19145 0.79146 0.79607 0.87871 1.90709 1.61700 1.66275 1.23436 1.22365 1.02103 0.94082 1.00251 0.85417 1.23148 0.97499 0.91727 1.04524 1.20145 0.86503 1.03609 0.97523 0.85684 1.20314 0.83516 1.10314 0.96111 1.22031 0.97106 1.07898 0.90103 1.70294 0.98968 1.19542 1.32358 1.24991 1.00116 1.05162 0.79751 1.43205 1.06670 1.55524 1.11278 0.74082 1.22159 0.93817 0.92639 0.91771 1.22099 1.00131 0.94359 1.00010 1.20828 0.88689 0.98389 0.87732 0.93664 0.92761 0.96415 0.91745 0.92964 0.90864 0.89877 0.91178 0.90808 0.87429 0.87098 0.81452 0.77444 0.91656 0.90307 0.93288 0.92157 0.89397 0.96312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.20 55.49 0.62 -25.55 16 2 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 3 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.81 9.57 -15.06 -0.14 -6.95 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 9 N -0.59 -14.44 2.98 -172.16 -0.51 -14.95 16 10 C 0.14 2.90 6.24 -3.64 -0.02 2.88 16 11 C -0.12 -1.90 4.70 -26.93 -0.13 -2.02 16 12 C -0.06 -0.84 0.53 -154.09 -0.08 -0.93 16 13 C -0.13 -1.45 6.00 -24.75 -0.15 -1.60 16 14 C 0.10 1.07 6.17 -2.32 -0.01 1.05 16 15 N -0.61 -8.49 3.33 -170.54 -0.57 -9.06 16 16 C 0.55 7.94 7.63 -10.98 -0.08 7.86 16 17 O -0.54 -9.89 16.59 5.55 0.09 -9.79 16 18 C -0.17 -1.67 4.78 -91.77 -0.44 -2.11 16 19 H 0.13 1.11 7.61 -51.93 -0.40 0.71 16 20 C -0.13 -1.03 9.76 -26.70 -0.26 -1.29 16 21 C -0.06 -0.54 5.85 -91.74 -0.54 -1.08 16 22 H 0.13 1.29 7.67 -51.93 -0.40 0.89 16 23 C 0.01 0.12 6.92 -81.60 -0.56 -0.44 16 24 C -0.02 -0.24 10.94 -17.81 -0.19 -0.43 16 25 N -0.49 -5.45 11.25 -14.66 -0.16 -5.61 16 26 C 0.18 1.45 13.04 -90.37 -1.18 0.27 16 27 N -0.56 -4.17 6.15 -10.30 -0.06 -4.23 16 28 H 0.42 1.92 8.96 -40.82 -0.37 1.56 16 29 C 0.12 1.93 5.05 -3.31 -0.02 1.91 16 30 C -0.13 -2.26 4.78 -26.94 -0.13 -2.39 16 31 C 0.17 3.93 5.03 -3.65 -0.02 3.91 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.02 0.38 7.47 -51.93 -0.39 -0.01 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.05 0.74 8.10 -51.93 -0.42 0.31 16 37 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 38 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 39 H 0.07 0.73 7.74 -51.93 -0.40 0.33 16 40 H 0.07 0.60 7.66 -51.93 -0.40 0.20 16 41 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.11 0.66 7.95 -51.93 -0.41 0.25 16 43 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.21 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.07 1.11 7.59 -51.93 -0.39 0.72 16 46 H 0.08 1.55 6.09 -51.93 -0.32 1.23 16 47 H 0.05 0.81 7.47 -51.93 -0.39 0.42 16 48 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 49 H 0.09 2.32 6.02 -51.93 -0.31 2.00 16 50 H 0.02 0.47 6.54 -51.93 -0.34 0.13 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -34.42 391.87 -11.60 -46.02 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.84 Total: 2.14 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.04 Total: -1.40 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.69 Total: -59.41 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.42 -11.60 -46.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040731788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.539 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds