Wall clock time and date at job start Wed Apr 1 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00240 * 2 1 4 4 H 1.48502 * 109.47206 * 274.33615 * 3 2 1 5 5 H 1.48502 * 109.47010 * 34.33378 * 3 2 1 6 6 H 1.48500 * 109.47132 * 154.33349 * 3 2 1 7 7 C 1.38815 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00398 * 162.48448 * 7 2 1 9 9 N 1.36942 * 119.99778 * 342.48563 * 7 2 1 10 10 C 1.46933 * 120.56041 * 152.05647 * 9 7 2 11 11 C 1.53320 * 108.69733 * 125.78334 * 10 9 7 12 12 C 1.52278 * 109.41531 * 53.52460 * 11 10 9 13 13 C 1.54516 * 110.20731 * 177.79064 * 12 11 10 14 14 C 1.55239 * 101.43540 * 206.61358 * 13 12 11 15 15 N 1.47477 * 104.79513 * 36.66031 * 14 13 12 16 16 C 1.34777 * 125.66445 * 155.92542 * 15 14 13 17 17 O 1.21283 * 120.00567 * 179.69545 * 16 15 14 18 18 C 1.50705 * 119.99393 * 359.42213 * 16 15 14 19 19 H 1.08999 * 115.55193 * 34.69289 * 18 16 15 20 20 C 1.52999 * 117.50144 * 249.01470 * 18 16 15 21 21 C 1.53003 * 117.49487 * 180.36017 * 18 16 15 22 22 H 1.08997 * 117.50272 * 359.97438 * 21 18 16 23 23 C 1.50697 * 117.49867 * 214.98201 * 21 18 16 24 24 C 1.34677 * 126.59030 * 325.02359 * 23 21 18 25 25 N 1.34128 * 108.01929 * 179.97438 * 24 23 21 26 26 C 1.30502 * 109.25855 * 0.02562 * 25 24 23 27 27 N 1.35043 * 108.69556 * 359.76660 * 26 25 24 28 28 H 0.97009 * 126.39226 * 180.26555 * 27 26 25 29 29 C 1.47176 * 108.67690 * 335.66827 * 15 14 13 30 30 C 1.52276 * 111.27046 * 300.35275 * 12 11 10 31 31 C 1.46922 * 120.56274 * 332.08151 * 9 7 2 32 32 H 0.97005 * 119.99399 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.60443 * 6.02117 * 10 9 7 34 34 H 1.09006 * 109.72925 * 245.61701 * 10 9 7 35 35 H 1.09003 * 109.47317 * 293.54410 * 11 10 9 36 36 H 1.08994 * 109.49261 * 173.51527 * 11 10 9 37 37 H 1.08997 * 111.01478 * 324.83892 * 13 12 11 38 38 H 1.09000 * 111.01390 * 88.71882 * 13 12 11 39 39 H 1.09000 * 110.48305 * 277.80396 * 14 13 12 40 40 H 1.09002 * 110.33148 * 155.44992 * 14 13 12 41 41 H 1.09004 * 117.49387 * 0.02562 * 20 18 16 42 42 H 1.08999 * 117.50050 * 144.99764 * 20 18 16 43 43 H 1.07999 * 125.98662 * 359.96216 * 24 23 21 44 44 H 1.08001 * 125.64785 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.90864 * 121.09878 * 29 15 14 46 46 H 1.08997 * 109.90839 * 242.17211 * 29 15 14 47 47 H 1.08993 * 109.48001 * 179.61897 * 30 12 11 48 48 H 1.09006 * 109.47896 * 299.65402 * 30 12 11 49 49 H 1.09000 * 109.59901 * 353.97549 * 31 9 7 50 50 H 1.08999 * 109.60209 * 114.28564 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4061 2.0993 -1.3961 5 1 1.4965 2.6244 0.7897 6 1 3.5906 1.4153 0.6064 7 6 2.0103 -1.2022 0.0005 8 1 3.0527 -1.2240 -0.2809 9 7 1.3732 -2.3605 0.3580 10 6 1.8166 -3.6537 -0.1803 11 6 2.0930 -4.6046 0.9902 12 6 0.8681 -4.6658 1.8928 13 6 1.1066 -5.6622 3.0494 14 6 -0.3450 -6.0998 3.3830 15 7 -1.0307 -6.1554 2.0785 16 6 -2.1212 -6.8949 1.7949 17 8 -2.6064 -6.8586 0.6839 18 6 -2.7340 -7.7715 2.8566 19 1 -2.6884 -7.3806 3.8730 20 6 -2.6167 -9.2863 2.6763 21 6 -3.9656 -8.5929 2.4701 22 1 -4.3329 -8.4990 1.4482 23 6 -5.0226 -8.8000 3.5241 24 6 -4.8185 -8.9547 4.8463 25 7 -6.0134 -9.1113 5.4351 26 6 -6.9502 -9.0601 4.5280 27 7 -6.3750 -8.8623 3.3223 28 1 -6.8345 -8.7807 2.4718 29 6 -0.3301 -5.2646 1.1394 30 6 0.5208 -3.2905 2.4467 31 6 0.2343 -2.3310 1.2857 32 1 -0.4849 0.8401 -0.0004 33 1 2.7281 -3.5148 -0.7615 34 1 1.0376 -4.0740 -0.8166 35 1 2.9472 -4.2397 1.5608 36 1 2.3114 -5.6008 0.6058 37 1 1.7074 -6.5091 2.7181 38 1 1.5695 -5.1668 3.9029 39 1 -0.8245 -5.3674 4.0324 40 1 -0.3454 -7.0829 3.8538 41 1 -2.0959 -9.6488 1.7900 42 1 -2.4938 -9.8920 3.5742 43 1 -3.8605 -8.9531 5.3449 44 1 -8.0102 -9.1557 4.7118 45 1 0.0198 -5.8342 0.2785 46 1 -1.0004 -4.4703 0.8112 47 1 -0.3619 -3.3666 3.0816 48 1 1.3587 -2.9123 3.0325 49 1 0.1027 -1.3199 1.6711 50 1 -0.6703 -2.6440 0.7644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040731788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:25 Heat of formation + Delta-G solvation = 52.615747 kcal Electronic energy + Delta-G solvation = -30379.010793 eV Core-core repulsion = 26407.475744 eV Total energy + Delta-G solvation = -3971.535049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.02090 -41.63506 -40.13945 -37.72684 -37.20291 -34.78118 -33.43938 -32.79406 -31.65591 -30.56003 -30.28686 -28.47123 -26.68173 -24.87229 -24.30992 -23.96857 -23.69551 -22.54710 -22.21001 -21.35419 -19.96679 -19.73330 -19.14311 -18.49749 -17.87657 -17.19396 -16.85572 -16.61453 -15.90372 -15.82128 -15.61611 -15.42300 -15.27837 -14.96891 -14.83076 -14.67044 -14.41610 -14.39110 -14.11353 -13.76212 -13.50183 -13.24496 -13.08019 -13.00516 -12.91143 -12.72857 -12.57531 -12.32416 -12.17554 -12.03819 -11.91031 -11.83375 -11.70361 -11.46310 -11.07455 -11.02831 -10.99351 -10.94733 -10.90613 -10.52822 -9.67919 -9.22486 -8.67113 -7.87760 -5.33230 0.94108 1.45217 1.46040 1.46500 1.56981 1.87855 2.16806 2.26033 2.50706 2.94431 3.25274 3.35467 3.61885 3.63976 3.65959 3.72732 3.81165 3.85151 3.92421 4.09481 4.11318 4.25354 4.29407 4.45412 4.46949 4.54114 4.59717 4.66375 4.68664 4.70946 4.74577 4.77213 4.86906 4.89545 4.97814 5.02949 5.04550 5.13296 5.18649 5.29090 5.32157 5.36660 5.39154 5.43773 5.51709 5.64600 5.74950 5.78012 6.38435 6.52002 6.53375 7.08950 7.10956 7.14281 7.86563 8.38041 9.18238 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019432 B = 0.002239 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.540049 B =12503.512181 C =13048.602752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.608 5.608 10 C 0.136 3.864 11 C -0.104 4.104 12 C -0.053 4.053 13 C -0.113 4.113 14 C 0.096 3.904 15 N -0.610 5.610 16 C 0.546 3.454 17 O -0.595 6.595 18 C -0.168 4.168 19 H 0.148 0.852 20 C -0.105 4.105 21 C -0.062 4.062 22 H 0.108 0.892 23 C 0.004 3.996 24 C -0.035 4.035 25 N -0.535 5.535 26 C 0.190 3.810 27 N -0.561 5.561 28 H 0.433 0.567 29 C 0.124 3.876 30 C -0.110 4.110 31 C 0.177 3.823 32 H 0.248 0.752 33 H 0.054 0.946 34 H 0.002 0.998 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.139 0.861 43 H 0.182 0.818 44 H 0.244 0.756 45 H 0.054 0.946 46 H 0.032 0.968 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.050 0.950 50 H -0.016 1.016 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 -22.434 11.920 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.795 3.205 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.087 0.913 9 N -0.332 5.332 10 C 0.011 3.989 11 C -0.143 4.143 12 C -0.054 4.054 13 C -0.151 4.151 14 C -0.025 4.025 15 N -0.342 5.342 16 C 0.337 3.663 17 O -0.477 6.477 18 C -0.189 4.189 19 H 0.166 0.834 20 C -0.143 4.143 21 C -0.082 4.082 22 H 0.126 0.874 23 C -0.112 4.112 24 C -0.183 4.183 25 N -0.254 5.254 26 C -0.093 4.093 27 N -0.164 5.164 28 H 0.273 0.727 29 C 0.001 3.999 30 C -0.149 4.149 31 C 0.052 3.948 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.020 0.980 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.157 0.843 43 H 0.199 0.801 44 H 0.260 0.740 45 H 0.073 0.927 46 H 0.051 0.949 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.002 0.998 Dipole moment (debyes) X Y Z Total from point charges -6.299 -22.440 12.203 26.309 hybrid contribution -0.289 1.903 -2.082 2.836 sum -6.588 -20.537 10.121 23.824 Atomic orbital electron populations 1.70224 1.06866 1.25718 1.55713 1.25837 0.95971 1.01695 1.01517 0.85261 0.78334 0.79566 0.77294 1.21528 1.21997 1.19008 1.19548 0.93049 0.86065 1.40248 0.91344 1.44320 1.36276 1.02202 1.50369 1.21120 0.96846 0.86340 0.94609 1.21777 0.96698 0.99292 0.96573 1.20883 0.93482 0.94921 0.96113 1.22905 0.95770 0.98558 0.97834 1.22724 0.92245 1.03732 0.83811 1.48610 1.28008 1.43132 1.14408 1.19972 0.78706 0.79505 0.88159 1.90682 1.63114 1.67964 1.25914 1.22300 1.02616 0.94659 0.99359 0.83390 1.23269 0.95459 0.89991 1.05546 1.20064 0.87130 1.04200 0.96798 0.87372 1.20293 0.84134 1.10969 0.95853 1.22336 0.97633 1.07944 0.90356 1.70293 0.99918 1.21438 1.33791 1.25706 1.01252 1.03121 0.79270 1.43263 1.06296 1.54936 1.11940 0.72732 1.21854 0.93644 0.91798 0.92573 1.21857 1.00859 0.94548 0.97673 1.20597 0.87412 0.97737 0.89099 0.94286 0.92772 0.98021 0.90945 0.90026 0.88808 0.87840 0.90628 0.86889 0.87643 0.84264 0.80071 0.74030 0.92734 0.94938 0.92023 0.91566 0.93118 0.99761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 11.20 21.65 0.24 -56.94 16 2 C -0.06 -3.14 4.90 84.86 0.42 -2.73 16 3 Si 0.97 45.35 29.59 68.60 2.03 47.38 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.26 -14.34 9.57 84.03 0.80 -13.53 16 8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -30.73 2.98 -698.60 -2.08 -32.82 16 10 C 0.14 5.64 6.24 86.40 0.54 6.18 16 11 C -0.10 -3.18 4.70 30.46 0.14 -3.03 16 12 C -0.05 -1.54 0.53 -51.91 -0.03 -1.57 16 13 C -0.11 -2.08 6.00 31.88 0.19 -1.89 16 14 C 0.10 1.68 6.17 86.96 0.54 2.22 16 15 N -0.61 -16.29 3.33 -811.84 -2.70 -18.99 16 16 C 0.55 15.42 7.63 87.66 0.67 16.09 16 17 O -0.60 -22.55 16.59 -3.04 -0.05 -22.60 16 18 C -0.17 -3.02 4.78 -11.54 -0.06 -3.08 16 19 H 0.15 2.06 7.61 -2.39 -0.02 2.05 16 20 C -0.11 -1.35 9.76 30.62 0.30 -1.05 16 21 C -0.06 -1.08 5.85 -11.52 -0.07 -1.15 16 22 H 0.11 2.27 7.67 -2.39 -0.02 2.25 16 23 C 0.00 0.06 6.92 40.95 0.28 0.35 16 24 C -0.04 -0.64 10.94 83.53 0.91 0.28 16 25 N -0.53 -10.90 11.25 -200.30 -2.25 -13.16 16 26 C 0.19 2.63 13.04 180.26 2.35 4.98 16 27 N -0.56 -7.45 6.15 -186.49 -1.15 -8.60 16 28 H 0.43 3.45 8.96 -92.70 -0.83 2.61 16 29 C 0.12 4.14 5.05 86.48 0.44 4.58 16 30 C -0.11 -3.90 4.78 30.46 0.15 -3.75 16 31 C 0.18 8.66 5.03 86.40 0.43 9.09 16 32 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 33 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 34 H 0.00 0.08 7.47 -2.38 -0.02 0.06 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 37 H 0.09 1.44 8.01 -2.39 -0.02 1.42 16 38 H 0.10 1.59 8.01 -2.39 -0.02 1.57 16 39 H 0.08 1.29 7.74 -2.39 -0.02 1.27 16 40 H 0.11 1.19 7.66 -2.39 -0.02 1.17 16 41 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.14 1.05 7.95 -2.39 -0.02 1.03 16 43 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 44 H 0.24 1.19 8.06 -2.91 -0.02 1.17 16 45 H 0.05 1.90 7.59 -2.39 -0.02 1.89 16 46 H 0.03 1.38 6.09 -2.39 -0.01 1.36 16 47 H 0.06 2.00 7.47 -2.39 -0.02 1.98 16 48 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 49 H 0.05 2.83 6.02 -2.39 -0.01 2.81 16 50 H -0.02 -0.85 6.54 -2.39 -0.02 -0.87 16 Total: -1.00 -80.98 391.87 2.17 -78.81 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.12 Total: 14.93 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 8.01 Total: 11.99 kcal Atomic # 7 Polarization: -122.56 SS G_CDS: -7.95 Total: -130.50 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.05 Total: -22.60 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -80.98 2.17 -78.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040731788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.424 kcal (2) G-P(sol) polarization free energy of solvation -80.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds