Wall clock time and date at job start Wed Apr 1 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99606 * 2 1 4 4 H 1.48494 * 109.46958 * 274.33318 * 3 2 1 5 5 H 1.48497 * 109.47030 * 34.33735 * 3 2 1 6 6 H 1.48500 * 109.46939 * 154.33575 * 3 2 1 7 7 C 1.38812 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99592 * 162.48105 * 7 2 1 9 9 N 1.36942 * 120.00185 * 342.48809 * 7 2 1 10 10 C 1.46931 * 120.56278 * 152.05410 * 9 7 2 11 11 C 1.53313 * 108.69657 * 125.78047 * 10 9 7 12 12 C 1.52277 * 109.41744 * 53.52628 * 11 10 9 13 13 C 1.54517 * 110.20734 * 177.79511 * 12 11 10 14 14 C 1.55242 * 101.43522 * 206.61112 * 13 12 11 15 15 N 1.47487 * 104.79379 * 36.66109 * 14 13 12 16 16 C 1.34780 * 125.66008 * 155.92687 * 15 14 13 17 17 O 1.21573 * 119.99408 * 179.69312 * 16 15 14 18 18 C 1.47703 * 120.00110 * 359.69506 * 16 15 14 19 19 C 1.41501 * 126.51682 * 180.29108 * 18 16 15 20 20 C 1.35365 * 105.50412 * 180.12746 * 19 18 16 21 21 C 1.50699 * 126.38758 * 179.86580 * 20 19 18 22 22 C 1.53002 * 117.49948 * 144.72276 * 21 20 19 23 23 C 1.53000 * 60.00106 * 107.48939 * 22 21 20 24 24 N 1.35038 * 107.22611 * 359.61507 * 20 19 18 25 25 H 0.97003 * 124.88353 * 180.22653 * 24 20 19 26 26 N 1.28463 * 110.22888 * 0.25254 * 24 20 19 27 27 C 1.47176 * 108.67475 * 335.66880 * 15 14 13 28 28 C 1.52271 * 111.26782 * 300.35344 * 12 11 10 29 29 C 1.46922 * 120.56099 * 332.08049 * 9 7 2 30 30 H 0.96993 * 120.00491 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.59948 * 6.01670 * 10 9 7 32 32 H 1.09000 * 109.72932 * 245.61659 * 10 9 7 33 33 H 1.09006 * 109.47922 * 293.54165 * 11 10 9 34 34 H 1.09002 * 109.49045 * 173.51518 * 11 10 9 35 35 H 1.08996 * 111.01446 * 324.83483 * 13 12 11 36 36 H 1.08996 * 111.01295 * 88.67841 * 13 12 11 37 37 H 1.09003 * 110.48381 * 277.80687 * 14 13 12 38 38 H 1.08995 * 110.33232 * 155.44525 * 14 13 12 39 39 H 1.08000 * 127.24980 * 0.04005 * 19 18 16 40 40 H 1.08994 * 115.56152 * 359.03129 * 21 20 19 41 41 H 1.09008 * 117.49473 * 359.97438 * 22 21 20 42 42 H 1.08996 * 117.49883 * 214.98667 * 22 21 20 43 43 H 1.08996 * 117.49779 * 107.49342 * 23 22 21 44 44 H 1.08996 * 117.49571 * 252.48689 * 23 22 21 45 45 H 1.09005 * 109.90826 * 121.10180 * 27 15 14 46 46 H 1.09006 * 109.90557 * 242.17423 * 27 15 14 47 47 H 1.09003 * 109.47739 * 179.61852 * 28 12 11 48 48 H 1.08994 * 109.48594 * 299.64746 * 28 12 11 49 49 H 1.09003 * 109.59967 * 353.97904 * 29 9 7 50 50 H 1.09003 * 109.59945 * 114.44233 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4059 2.0993 -1.3960 5 1 1.4963 2.6244 0.7897 6 1 3.5905 1.4156 0.6064 7 6 2.0103 -1.2021 0.0005 8 1 3.0528 -1.2238 -0.2810 9 7 1.3733 -2.3605 0.3579 10 6 1.8167 -3.6537 -0.1804 11 6 2.0933 -4.6045 0.9901 12 6 0.8685 -4.6658 1.8927 13 6 1.1072 -5.6622 3.0494 14 6 -0.3443 -6.1000 3.3830 15 7 -1.0301 -6.1558 2.0785 16 6 -2.1206 -6.8954 1.7951 17 8 -2.6070 -6.8590 0.6815 18 6 -2.7247 -7.7500 2.8374 19 6 -3.8596 -8.5822 2.6905 20 6 -4.0407 -9.1639 3.8993 21 6 -5.1267 -10.1418 4.2672 22 6 -4.7695 -11.2565 5.2525 23 6 -5.6619 -10.0971 5.6999 24 7 -3.0634 -8.7087 4.7125 25 1 -2.9501 -8.9653 5.6412 26 7 -2.3057 -7.8868 4.0796 27 6 -0.3297 -5.2649 1.1394 28 6 0.5211 -3.2906 2.4466 29 6 0.2344 -2.3311 1.2857 30 1 -0.4850 0.8399 0.0004 31 1 2.7282 -3.5146 -0.7617 32 1 1.0379 -4.0740 -0.8166 33 1 2.9475 -4.2397 1.5606 34 1 2.3118 -5.6008 0.6055 35 1 1.7080 -6.5091 2.7180 36 1 1.5707 -5.1669 3.9025 37 1 -0.8239 -5.3676 4.0324 38 1 -0.3446 -7.0830 3.8538 39 1 -4.4566 -8.7227 1.8015 40 1 -5.8341 -10.3797 3.4730 41 1 -3.7488 -11.2828 5.6342 42 1 -5.2418 -12.2279 5.1062 43 1 -6.7214 -10.3057 5.8482 44 1 -5.2286 -9.3607 6.3766 45 1 0.0202 -5.8345 0.2784 46 1 -1.0002 -4.4706 0.8112 47 1 -0.3616 -3.3669 3.0816 48 1 1.3588 -2.9124 3.0324 49 1 0.1027 -1.3200 1.6710 50 1 -0.6696 -2.6469 0.7650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040861504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:34 Heat of formation + Delta-G solvation = 93.647323 kcal Electronic energy + Delta-G solvation = -30493.283510 eV Core-core repulsion = 26523.527723 eV Total energy + Delta-G solvation = -3969.755787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.97252 -40.13040 -38.24596 -37.63453 -35.76268 -33.12806 -32.02123 -31.16556 -30.65002 -29.93063 -29.15990 -26.79814 -25.00415 -24.02185 -23.12569 -23.00588 -22.44507 -22.10896 -21.32767 -20.59630 -18.82583 -18.13980 -18.07224 -16.86896 -16.45088 -16.16014 -15.88865 -15.53509 -15.13951 -14.83395 -14.47017 -13.96836 -13.87422 -13.73383 -13.64229 -13.12701 -13.09454 -12.85225 -12.71468 -12.43558 -12.22415 -12.18755 -11.94033 -11.61191 -11.59503 -11.30203 -11.14296 -11.08630 -10.94941 -10.74190 -10.65824 -10.38866 -10.19218 -10.08263 -9.95177 -9.76929 -9.58009 -9.44622 -9.31224 -9.06540 -8.43556 -8.33882 -6.59573 -5.73154 -3.15035 1.41122 1.80749 2.51717 3.14335 3.33694 3.40541 3.47793 3.48983 3.50068 3.90626 4.16871 4.24543 4.34539 4.54220 4.59096 4.78034 4.85262 4.99848 5.09377 5.17062 5.24335 5.37411 5.41535 5.43710 5.43843 5.46649 5.55249 5.66261 5.72621 5.76329 5.89969 6.03099 6.10707 6.12379 6.16163 6.19781 6.34585 6.37748 6.45836 6.55600 6.66283 6.71069 6.73648 6.83324 6.92230 7.05296 7.42045 7.57777 7.72431 7.72757 7.84849 8.31777 8.50842 9.27005 9.90988 10.47829 11.35063 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.002197 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.348001 B =12744.010137 C =12929.747874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.142 3.858 11 C -0.117 4.117 12 C -0.055 4.055 13 C -0.129 4.129 14 C 0.104 3.896 15 N -0.601 5.601 16 C 0.610 3.390 17 O -0.534 6.534 18 C 0.003 3.997 19 C -0.169 4.169 20 C 0.044 3.956 21 C -0.086 4.086 22 C -0.174 4.174 23 C -0.174 4.174 24 N -0.385 5.385 25 H 0.441 0.559 26 N -0.253 5.253 27 C 0.118 3.882 28 C -0.127 4.127 29 C 0.170 3.830 30 H 0.253 0.747 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.577 -22.658 14.354 27.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.198 4.198 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.157 4.157 12 C -0.056 4.056 13 C -0.167 4.167 14 C -0.019 4.019 15 N -0.334 5.334 16 C 0.396 3.604 17 O -0.409 6.409 18 C -0.158 4.158 19 C -0.197 4.197 20 C -0.081 4.081 21 C -0.105 4.105 22 C -0.211 4.211 23 C -0.211 4.211 24 N -0.098 5.098 25 H 0.285 0.715 26 N -0.088 5.088 27 C -0.003 4.003 28 C -0.166 4.166 29 C 0.044 3.956 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.181 0.819 40 H 0.151 0.849 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.174 -22.119 14.381 27.341 hybrid contribution -0.188 0.487 0.073 0.527 sum -7.362 -21.632 14.454 27.039 Atomic orbital electron populations 1.70041 1.05230 1.25406 1.53930 1.25037 0.95245 0.98374 1.01112 0.86318 0.79199 0.83911 0.77573 1.21530 1.21640 1.20493 1.19173 0.92691 0.84930 1.41204 0.91761 1.44035 1.36303 1.01349 1.49644 1.20953 0.97660 0.87034 0.92752 1.21917 0.96207 0.99219 0.98326 1.20972 0.94506 0.95469 0.94649 1.22950 0.95328 0.99178 0.99228 1.22530 0.92101 1.02232 0.84999 1.48402 1.27643 1.43404 1.13937 1.16487 0.79248 0.78930 0.85762 1.90812 1.62009 1.66230 1.21853 1.21924 0.98808 1.03196 0.91884 1.21442 0.99764 1.00380 0.98110 1.20422 0.94430 1.01740 0.91539 1.20528 0.97773 0.97521 0.94721 1.23099 1.00921 0.94499 1.02625 1.23097 1.00815 1.01206 0.96019 1.43281 1.20553 1.32705 1.13304 0.71507 1.73705 1.17954 1.10141 1.07013 1.22187 0.93825 0.92605 0.91717 1.22097 1.00115 0.94364 1.00001 1.20837 0.88715 0.98332 0.87734 0.93692 0.92798 0.96308 0.91807 0.92957 0.91077 0.90060 0.91472 0.89502 0.81889 0.84856 0.88796 0.87536 0.87509 0.88776 0.91477 0.90120 0.93276 0.92241 0.89423 0.96224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 11.20 55.49 0.62 -25.92 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.06 16 3 Si 0.90 21.87 29.59 -169.99 -5.03 16.85 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.89 9.57 -15.06 -0.14 -7.04 16 8 H 0.06 1.74 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -14.79 2.98 -172.16 -0.51 -15.30 16 10 C 0.14 3.00 6.24 -3.64 -0.02 2.97 16 11 C -0.12 -2.00 4.70 -26.94 -0.13 -2.13 16 12 C -0.06 -0.91 0.53 -154.09 -0.08 -0.99 16 13 C -0.13 -1.70 6.00 -24.75 -0.15 -1.85 16 14 C 0.10 1.40 5.85 -2.31 -0.01 1.39 16 15 N -0.60 -9.82 3.33 -171.69 -0.57 -10.39 16 16 C 0.61 10.53 7.86 -12.39 -0.10 10.43 16 17 O -0.53 -10.87 17.25 5.30 0.09 -10.78 16 18 C 0.00 0.04 6.97 -82.77 -0.58 -0.54 16 19 C -0.17 -2.00 10.73 -39.36 -0.42 -2.43 16 20 C 0.04 0.39 6.64 -82.21 -0.55 -0.16 16 21 C -0.09 -0.48 6.26 -91.77 -0.57 -1.05 16 22 C -0.17 -0.68 10.23 -26.73 -0.27 -0.95 16 23 C -0.17 -0.70 10.22 -26.73 -0.27 -0.97 16 24 N -0.38 -3.25 6.80 33.50 0.23 -3.03 16 25 H 0.44 2.19 8.96 -190.44 -1.71 0.48 16 26 N -0.25 -2.99 9.35 33.42 0.31 -2.68 16 27 C 0.12 2.10 5.05 -3.32 -0.02 2.08 16 28 C -0.13 -2.38 4.78 -26.94 -0.13 -2.51 16 29 C 0.17 4.05 5.03 -3.65 -0.02 4.03 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 32 H 0.02 0.41 7.47 -51.93 -0.39 0.02 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 36 H 0.08 0.98 8.01 -51.93 -0.42 0.57 16 37 H 0.07 0.91 7.74 -51.93 -0.40 0.51 16 38 H 0.09 1.07 6.19 -51.93 -0.32 0.75 16 39 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 0.34 8.14 -51.92 -0.42 -0.09 16 42 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 1.21 7.59 -51.93 -0.39 0.82 16 46 H 0.08 1.66 6.08 -51.93 -0.32 1.35 16 47 H 0.05 0.87 7.47 -51.93 -0.39 0.48 16 48 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.09 2.36 6.02 -51.93 -0.31 2.05 16 50 H 0.02 0.51 6.53 -51.93 -0.34 0.17 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -33.48 390.75 -11.69 -45.17 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -9.16 Total: -0.05 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -3.55 Total: 0.24 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.08 Total: -57.31 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.48 -11.69 -45.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040861504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.816 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds