Wall clock time and date at job start Wed Apr 1 2020 02:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99606 * 2 1 4 4 H 1.48494 * 109.46958 * 274.33318 * 3 2 1 5 5 H 1.48497 * 109.47030 * 34.33735 * 3 2 1 6 6 H 1.48500 * 109.46939 * 154.33575 * 3 2 1 7 7 C 1.38812 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99592 * 162.48105 * 7 2 1 9 9 N 1.36942 * 120.00185 * 342.48809 * 7 2 1 10 10 C 1.46931 * 120.56278 * 152.05410 * 9 7 2 11 11 C 1.53313 * 108.69657 * 125.78047 * 10 9 7 12 12 C 1.52277 * 109.41744 * 53.52628 * 11 10 9 13 13 C 1.54517 * 110.20734 * 177.79511 * 12 11 10 14 14 C 1.55242 * 101.43522 * 206.61112 * 13 12 11 15 15 N 1.47487 * 104.79379 * 36.66109 * 14 13 12 16 16 C 1.34780 * 125.66008 * 155.92687 * 15 14 13 17 17 O 1.21573 * 119.99408 * 179.69312 * 16 15 14 18 18 C 1.47703 * 120.00110 * 359.69506 * 16 15 14 19 19 C 1.41501 * 126.51682 * 180.29108 * 18 16 15 20 20 C 1.35365 * 105.50412 * 180.12746 * 19 18 16 21 21 C 1.50699 * 126.38758 * 179.86580 * 20 19 18 22 22 C 1.53002 * 117.49948 * 144.72276 * 21 20 19 23 23 C 1.53000 * 60.00106 * 107.48939 * 22 21 20 24 24 N 1.35038 * 107.22611 * 359.61507 * 20 19 18 25 25 H 0.97003 * 124.88353 * 180.22653 * 24 20 19 26 26 N 1.28463 * 110.22888 * 0.25254 * 24 20 19 27 27 C 1.47176 * 108.67475 * 335.66880 * 15 14 13 28 28 C 1.52271 * 111.26782 * 300.35344 * 12 11 10 29 29 C 1.46922 * 120.56099 * 332.08049 * 9 7 2 30 30 H 0.96993 * 120.00491 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.59948 * 6.01670 * 10 9 7 32 32 H 1.09000 * 109.72932 * 245.61659 * 10 9 7 33 33 H 1.09006 * 109.47922 * 293.54165 * 11 10 9 34 34 H 1.09002 * 109.49045 * 173.51518 * 11 10 9 35 35 H 1.08996 * 111.01446 * 324.83483 * 13 12 11 36 36 H 1.08996 * 111.01295 * 88.67841 * 13 12 11 37 37 H 1.09003 * 110.48381 * 277.80687 * 14 13 12 38 38 H 1.08995 * 110.33232 * 155.44525 * 14 13 12 39 39 H 1.08000 * 127.24980 * 0.04005 * 19 18 16 40 40 H 1.08994 * 115.56152 * 359.03129 * 21 20 19 41 41 H 1.09008 * 117.49473 * 359.97438 * 22 21 20 42 42 H 1.08996 * 117.49883 * 214.98667 * 22 21 20 43 43 H 1.08996 * 117.49779 * 107.49342 * 23 22 21 44 44 H 1.08996 * 117.49571 * 252.48689 * 23 22 21 45 45 H 1.09005 * 109.90826 * 121.10180 * 27 15 14 46 46 H 1.09006 * 109.90557 * 242.17423 * 27 15 14 47 47 H 1.09003 * 109.47739 * 179.61852 * 28 12 11 48 48 H 1.08994 * 109.48594 * 299.64746 * 28 12 11 49 49 H 1.09003 * 109.59967 * 353.97904 * 29 9 7 50 50 H 1.09003 * 109.59945 * 114.44233 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4059 2.0993 -1.3960 5 1 1.4963 2.6244 0.7897 6 1 3.5905 1.4156 0.6064 7 6 2.0103 -1.2021 0.0005 8 1 3.0528 -1.2238 -0.2810 9 7 1.3733 -2.3605 0.3579 10 6 1.8167 -3.6537 -0.1804 11 6 2.0933 -4.6045 0.9901 12 6 0.8685 -4.6658 1.8927 13 6 1.1072 -5.6622 3.0494 14 6 -0.3443 -6.1000 3.3830 15 7 -1.0301 -6.1558 2.0785 16 6 -2.1206 -6.8954 1.7951 17 8 -2.6070 -6.8590 0.6815 18 6 -2.7247 -7.7500 2.8374 19 6 -3.8596 -8.5822 2.6905 20 6 -4.0407 -9.1639 3.8993 21 6 -5.1267 -10.1418 4.2672 22 6 -4.7695 -11.2565 5.2525 23 6 -5.6619 -10.0971 5.6999 24 7 -3.0634 -8.7087 4.7125 25 1 -2.9501 -8.9653 5.6412 26 7 -2.3057 -7.8868 4.0796 27 6 -0.3297 -5.2649 1.1394 28 6 0.5211 -3.2906 2.4466 29 6 0.2344 -2.3311 1.2857 30 1 -0.4850 0.8399 0.0004 31 1 2.7282 -3.5146 -0.7617 32 1 1.0379 -4.0740 -0.8166 33 1 2.9475 -4.2397 1.5606 34 1 2.3118 -5.6008 0.6055 35 1 1.7080 -6.5091 2.7180 36 1 1.5707 -5.1669 3.9025 37 1 -0.8239 -5.3676 4.0324 38 1 -0.3446 -7.0830 3.8538 39 1 -4.4566 -8.7227 1.8015 40 1 -5.8341 -10.3797 3.4730 41 1 -3.7488 -11.2828 5.6342 42 1 -5.2418 -12.2279 5.1062 43 1 -6.7214 -10.3057 5.8482 44 1 -5.2286 -9.3607 6.3766 45 1 0.0202 -5.8345 0.2784 46 1 -1.0002 -4.4706 0.8112 47 1 -0.3616 -3.3669 3.0816 48 1 1.3588 -2.9124 3.0324 49 1 0.1027 -1.3200 1.6710 50 1 -0.6696 -2.6469 0.7650 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040861504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:32 Heat of formation + Delta-G solvation = 73.015183 kcal Electronic energy + Delta-G solvation = -30494.178187 eV Core-core repulsion = 26523.527723 eV Total energy + Delta-G solvation = -3970.650463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.81915 -41.49167 -39.66207 -38.07669 -37.40917 -34.82774 -33.13295 -32.63054 -31.65924 -31.55875 -30.58053 -28.31474 -26.64779 -25.04131 -24.30541 -23.85812 -23.48857 -23.27002 -22.22987 -22.06220 -19.97778 -19.73231 -18.86533 -18.43599 -17.70496 -17.32861 -16.84335 -16.67524 -16.41537 -16.32572 -15.72180 -15.40096 -15.21618 -15.05607 -14.82974 -14.66724 -14.41884 -14.39546 -13.84010 -13.74980 -13.40363 -13.13064 -13.05567 -12.99501 -12.76839 -12.56338 -12.46166 -12.39430 -12.18187 -12.05337 -11.95627 -11.86489 -11.77528 -11.49495 -11.43633 -11.23884 -11.07395 -10.94445 -10.51713 -10.50464 -9.78748 -9.69968 -8.64991 -7.85356 -5.30904 0.42163 0.95948 1.46666 1.47673 1.58356 1.68055 2.05948 2.25714 2.52456 3.00196 3.17226 3.28414 3.42639 3.56527 3.63128 3.73594 3.76920 3.83376 4.04061 4.05470 4.17235 4.25638 4.29646 4.43521 4.54219 4.55196 4.66054 4.69874 4.75195 4.75537 4.75870 4.78596 4.89929 4.96820 5.00947 5.04254 5.10779 5.13580 5.15115 5.19842 5.24532 5.29025 5.35734 5.39554 5.43649 5.52889 5.66453 5.78798 6.01817 6.40526 6.42236 6.73219 7.03575 7.16176 7.88376 8.40456 9.20725 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025603 B = 0.002197 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.348001 B =12744.010137 C =12929.747874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.056 4.056 3 Si 0.968 3.032 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.607 5.607 10 C 0.136 3.864 11 C -0.104 4.104 12 C -0.051 4.051 13 C -0.113 4.113 14 C 0.106 3.894 15 N -0.603 5.603 16 C 0.602 3.398 17 O -0.581 6.581 18 C -0.026 4.026 19 C -0.197 4.197 20 C 0.070 3.930 21 C -0.107 4.107 22 C -0.161 4.161 23 C -0.165 4.165 24 N -0.363 5.363 25 H 0.459 0.541 26 N -0.252 5.252 27 C 0.124 3.876 28 C -0.110 4.110 29 C 0.178 3.822 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.004 0.996 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.040 0.960 47 H 0.058 0.942 48 H 0.067 0.933 49 H 0.052 0.948 50 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 -25.171 17.581 31.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.388 4.388 8 H 0.087 0.913 9 N -0.331 5.331 10 C 0.011 3.989 11 C -0.143 4.143 12 C -0.052 4.052 13 C -0.151 4.151 14 C -0.016 4.016 15 N -0.334 5.334 16 C 0.391 3.609 17 O -0.460 6.460 18 C -0.185 4.185 19 C -0.225 4.225 20 C -0.056 4.056 21 C -0.127 4.127 22 C -0.199 4.199 23 C -0.202 4.202 24 N -0.080 5.080 25 H 0.307 0.693 26 N -0.090 5.090 27 C 0.001 3.999 28 C -0.149 4.149 29 C 0.052 3.948 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.022 0.978 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.117 0.883 45 H 0.078 0.922 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges -5.936 -24.665 17.656 30.909 hybrid contribution -0.653 1.181 -0.936 1.642 sum -6.589 -23.484 16.721 29.572 Atomic orbital electron populations 1.70222 1.06849 1.25716 1.55692 1.25847 0.95982 1.01703 1.01562 0.85251 0.78297 0.79565 0.77274 1.21524 1.22028 1.19042 1.19549 0.93052 0.86033 1.40211 0.91298 1.44309 1.36243 1.02212 1.50321 1.21119 0.97008 0.86268 0.94498 1.21781 0.96491 0.99414 0.96624 1.20882 0.93553 0.94867 0.95923 1.22929 0.95385 0.98617 0.98138 1.22695 0.91985 1.03352 0.83553 1.48502 1.27544 1.42641 1.14731 1.17011 0.79026 0.78921 0.85986 1.90766 1.63344 1.67874 1.23976 1.21528 1.00287 1.04465 0.92239 1.21569 0.99895 1.01438 0.99612 1.20707 0.94184 1.00560 0.90182 1.20657 0.97581 0.98280 0.96183 1.23216 1.01441 0.94634 1.00588 1.23213 1.01706 1.01203 0.94126 1.43336 1.19549 1.31160 1.13958 0.69275 1.73577 1.18506 1.10805 1.06070 1.21959 0.93743 0.91768 0.92402 1.21860 1.00796 0.94455 0.97822 1.20596 0.87538 0.97647 0.89015 0.94286 0.92576 0.97801 0.90797 0.90062 0.89075 0.87705 0.91318 0.87714 0.82268 0.84201 0.88147 0.86260 0.86356 0.88283 0.92175 0.94179 0.92325 0.91428 0.92969 0.99560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 11.20 21.65 0.24 -57.55 16 2 C -0.06 -3.22 4.90 84.86 0.42 -2.81 16 3 Si 0.97 45.89 29.59 68.60 2.03 47.92 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.26 -14.48 9.57 84.03 0.80 -13.68 16 8 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 9 N -0.61 -31.28 2.98 -698.60 -2.08 -33.37 16 10 C 0.14 5.80 6.24 86.40 0.54 6.34 16 11 C -0.10 -3.36 4.70 30.46 0.14 -3.22 16 12 C -0.05 -1.64 0.53 -51.91 -0.03 -1.67 16 13 C -0.11 -2.58 6.00 31.88 0.19 -2.39 16 14 C 0.11 2.62 5.85 86.96 0.51 3.13 16 15 N -0.60 -19.81 3.33 -815.36 -2.72 -22.52 16 16 C 0.60 21.60 7.86 86.74 0.68 22.28 16 17 O -0.58 -25.30 17.25 -3.94 -0.07 -25.37 16 18 C -0.03 -0.74 6.97 42.45 0.30 -0.44 16 19 C -0.20 -4.68 10.73 22.41 0.24 -4.44 16 20 C 0.07 1.10 6.64 41.40 0.28 1.38 16 21 C -0.11 -0.93 6.26 -11.54 -0.07 -1.00 16 22 C -0.16 -0.68 10.23 30.60 0.31 -0.37 16 23 C -0.17 -0.77 10.22 30.60 0.31 -0.45 16 24 N -0.36 -5.22 6.80 -47.93 -0.33 -5.54 16 25 H 0.46 2.92 8.96 -219.99 -1.97 0.95 16 26 N -0.25 -5.53 9.35 -48.18 -0.45 -5.99 16 27 C 0.12 4.53 5.05 86.48 0.44 4.97 16 28 C -0.11 -4.14 4.78 30.46 0.15 -3.99 16 29 C 0.18 8.92 5.03 86.40 0.43 9.35 16 30 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 31 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 32 H 0.00 0.18 7.47 -2.39 -0.02 0.16 16 33 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 35 H 0.09 1.82 8.01 -2.39 -0.02 1.80 16 36 H 0.10 2.01 8.01 -2.39 -0.02 1.99 16 37 H 0.07 1.71 7.74 -2.39 -0.02 1.69 16 38 H 0.10 2.27 6.19 -2.39 -0.01 2.26 16 39 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.12 0.32 8.14 -2.39 -0.02 0.31 16 44 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.06 2.25 7.59 -2.38 -0.02 2.24 16 46 H 0.04 1.79 6.08 -2.38 -0.01 1.77 16 47 H 0.06 2.07 7.47 -2.39 -0.02 2.05 16 48 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.05 2.97 6.02 -2.39 -0.01 2.95 16 50 H -0.01 -0.76 6.53 -2.39 -0.02 -0.77 16 Total: -1.00 -78.01 390.75 1.25 -76.75 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -1.01 Total: 12.67 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.64 Total: 13.00 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -5.33 Total: -124.97 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.07 Total: -25.37 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -78.01 1.25 -76.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040861504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.769 kcal (2) G-P(sol) polarization free energy of solvation -78.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds