Wall clock time and date at job start Wed Apr 1 2020 02:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48500 * 109.47282 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46872 * 300.00051 * 3 2 1 6 6 H 1.48504 * 109.46986 * 59.99788 * 3 2 1 7 7 C 1.38813 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00457 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.47169 * 125.59132 * 359.97438 * 9 7 2 11 11 C 1.54666 * 107.34941 * 179.11869 * 10 9 7 12 12 C 1.53314 * 102.71326 * 339.48831 * 11 10 9 13 13 C 1.53305 * 112.21573 * 155.00243 * 12 11 10 14 14 C 1.54663 * 102.71692 * 88.17714 * 13 12 11 15 15 N 1.47170 * 107.35036 * 20.50340 * 14 13 12 16 16 C 1.34774 * 125.59211 * 180.88336 * 15 14 13 17 17 O 1.21626 * 119.99646 * 174.96648 * 16 15 14 18 18 C 1.47158 * 120.00259 * 355.24255 * 16 15 14 19 19 C 1.38409 * 126.88447 * 5.44537 * 18 16 15 20 20 C 1.39671 * 105.35928 * 179.91585 * 19 18 16 21 21 N 1.30861 * 107.86552 * 0.35620 * 20 19 18 22 22 N 1.28449 * 110.92291 * 359.77085 * 21 20 19 23 23 C 1.46498 * 125.18615 * 180.02562 * 22 21 20 24 24 C 1.53772 * 113.61791 * 43.70390 * 23 22 21 25 25 C 1.53954 * 87.02229 * 220.04624 * 24 23 22 26 26 C 1.53779 * 87.10915 * 25.36109 * 25 24 23 27 27 C 1.47785 * 108.81183 * 1.15178 * 15 14 13 28 28 C 1.47784 * 125.59295 * 179.97438 * 9 7 2 29 29 H 0.97000 * 119.99660 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.87251 * 59.67549 * 10 9 7 31 31 H 1.08997 * 109.98185 * 298.62082 * 10 9 7 32 32 H 1.08994 * 110.76011 * 221.18403 * 11 10 9 33 33 H 1.09002 * 110.92114 * 97.86923 * 11 10 9 34 34 H 1.08997 * 110.76675 * 329.86711 * 13 12 11 35 35 H 1.09004 * 110.92256 * 206.55247 * 13 12 11 36 36 H 1.08998 * 109.87120 * 261.06368 * 14 13 12 37 37 H 1.08997 * 109.87009 * 139.94848 * 14 13 12 38 38 H 1.08001 * 127.31611 * 0.02562 * 19 18 16 39 39 H 1.08001 * 126.07021 * 180.10472 * 20 19 18 40 40 H 1.09008 * 112.84771 * 174.90136 * 23 22 21 41 41 H 1.09003 * 113.61738 * 334.56601 * 24 23 22 42 42 H 1.09000 * 113.61912 * 105.46899 * 24 23 22 43 43 H 1.08997 * 113.53962 * 270.81017 * 25 24 23 44 44 H 1.08998 * 113.74431 * 139.94279 * 25 24 23 45 45 H 1.09003 * 113.61612 * 220.08875 * 26 25 24 46 46 H 1.09001 * 113.68995 * 89.19914 * 26 25 24 47 47 H 1.08996 * 110.40568 * 96.37109 * 27 15 14 48 48 H 1.08999 * 110.40079 * 218.78906 * 27 15 14 49 49 H 1.08994 * 110.40312 * 83.35467 * 28 9 7 50 50 H 1.08998 * 110.40024 * 320.94101 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1391 -2.5315 0.0028 11 6 -0.4543 -4.0455 -0.0190 12 6 0.8470 -4.6534 -0.5551 13 6 1.0310 -6.1102 -0.1143 14 6 0.3033 -6.8976 -1.2290 15 7 0.2145 -6.0152 -2.4034 16 6 -0.3672 -6.3288 -3.5780 17 8 -0.4638 -5.4886 -4.4521 18 6 -0.8908 -7.6859 -3.8007 19 6 -0.9568 -8.7130 -2.8753 20 6 -1.5272 -9.7898 -3.5579 21 7 -1.7622 -9.4069 -4.7870 22 7 -1.4036 -8.1862 -4.9637 23 6 -1.5265 -7.4438 -6.2206 24 6 -2.8744 -7.6529 -6.9305 25 6 -2.0823 -7.6912 -8.2500 26 6 -0.8719 -8.1499 -7.4197 27 6 0.8735 -4.7311 -2.0856 28 6 1.9362 -3.7339 0.0017 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5589 -2.0529 -0.8819 31 1 -0.5569 -2.0790 0.9021 32 1 -1.2855 -4.2574 -0.6914 33 1 -0.6678 -4.4131 0.9847 34 1 0.5590 -6.2839 0.8527 35 1 2.0875 -6.3761 -0.0802 36 1 -0.6974 -7.1724 -0.8956 37 1 0.8709 -7.7934 -1.4807 38 1 -0.6370 -8.6868 -1.8441 39 1 -1.7336 -10.7666 -3.1458 40 1 -1.2425 -6.3959 -6.1227 41 1 -3.3562 -8.5988 -6.6829 42 1 -3.5478 -6.7997 -6.8491 43 1 -1.9514 -6.7107 -8.7078 44 1 -2.4387 -8.4429 -8.9543 45 1 0.0691 -7.6973 -7.7326 46 1 -0.8038 -9.2317 -7.3054 47 1 1.9005 -4.7305 -2.4507 48 1 0.3153 -3.9005 -2.5173 49 1 2.2017 -4.0306 1.0164 50 1 2.8151 -3.7524 -0.6427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041289281.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:20 Heat of formation + Delta-G solvation = 108.126249 kcal Electronic energy + Delta-G solvation = -30914.862767 eV Core-core repulsion = 26945.734833 eV Total energy + Delta-G solvation = -3969.127933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.73985 -40.22082 -38.70815 -38.28022 -35.80483 -32.90600 -31.90234 -31.23456 -30.50270 -29.10829 -28.33184 -26.10791 -26.04423 -25.55253 -24.39936 -22.99874 -21.93846 -21.85018 -20.33923 -20.12547 -19.16486 -18.86649 -17.45683 -16.73837 -16.51385 -16.24703 -15.81311 -15.58535 -15.32398 -14.84983 -14.59258 -14.20245 -13.89767 -13.87112 -13.78781 -13.29607 -13.02428 -12.85944 -12.78796 -12.56356 -12.48885 -12.02735 -11.98295 -11.70987 -11.52257 -11.40603 -11.21034 -11.06768 -10.93155 -10.88269 -10.78437 -10.71302 -10.25303 -10.05059 -10.01139 -9.87438 -9.76748 -9.62349 -9.31143 -9.12069 -8.61513 -8.59145 -6.83210 -5.70477 -3.04223 1.16788 2.19703 2.48567 3.02603 3.15211 3.40583 3.45975 3.48527 4.04796 4.20027 4.24889 4.45163 4.49921 4.51881 4.60166 4.68404 4.84191 4.92260 5.00739 5.23802 5.24312 5.28997 5.39093 5.40240 5.44427 5.48726 5.52019 5.55345 5.57226 5.58847 5.66602 5.79879 5.86488 5.90365 5.96755 6.02704 6.07236 6.15760 6.24462 6.31060 6.39261 6.49803 6.56206 6.64194 6.69777 6.76356 7.44273 7.56724 7.62446 7.83809 7.92069 8.07494 8.25592 9.22196 9.82382 10.47767 11.41086 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.002648 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.363918 B =10571.353884 C =11691.077015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.129 4.129 12 C -0.083 4.083 13 C -0.118 4.118 14 C 0.095 3.905 15 N -0.598 5.598 16 C 0.602 3.398 17 O -0.543 6.543 18 C -0.029 4.029 19 C -0.202 4.202 20 C -0.008 4.008 21 N -0.278 5.278 22 N -0.245 5.245 23 C 0.108 3.892 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.141 4.141 27 C 0.133 3.867 28 C 0.152 3.848 29 H 0.251 0.749 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.169 0.831 39 H 0.185 0.815 40 H 0.155 0.845 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.026 0.974 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.039 -21.422 -8.061 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.168 4.168 12 C -0.085 4.085 13 C -0.157 4.157 14 C -0.027 4.027 15 N -0.331 5.331 16 C 0.389 3.611 17 O -0.421 6.421 18 C -0.158 4.158 19 C -0.230 4.230 20 C -0.184 4.184 21 N -0.110 5.110 22 N -0.032 5.032 23 C 0.007 3.993 24 C -0.178 4.178 25 C -0.174 4.174 26 C -0.180 4.180 27 C 0.012 3.988 28 C 0.025 3.975 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.186 0.814 39 H 0.202 0.798 40 H 0.172 0.828 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.107 0.893 49 H 0.043 0.957 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.605 -21.029 -9.748 23.457 hybrid contribution 0.705 1.072 0.945 1.593 sum -2.900 -19.957 -8.803 22.004 Atomic orbital electron populations 1.69978 1.04867 1.24888 1.57093 1.24802 0.95707 0.97666 1.02270 0.86060 0.78707 0.83866 0.77214 1.20522 1.21784 1.21804 1.19084 0.90430 0.82359 1.43714 0.90392 1.44598 1.01572 0.99741 1.87301 1.21221 0.84239 0.88047 1.01114 1.22664 0.95009 0.99582 0.99499 1.21636 0.99134 0.94129 0.93591 1.22468 1.00978 0.94493 0.97735 1.22511 1.00889 0.93598 0.85745 1.48282 1.55531 1.17411 1.11885 1.16490 0.77869 0.85071 0.81656 1.90746 1.58393 1.49868 1.43112 1.21402 1.08848 0.96444 0.89072 1.22789 1.06665 0.92458 1.01134 1.23568 1.03986 1.00796 0.90057 1.73056 1.19892 0.96714 1.21348 1.45795 1.40865 1.07384 1.09168 1.23919 0.99587 0.97887 0.77885 1.23360 0.95551 1.03739 0.95156 1.22713 0.96051 1.02460 0.96155 1.23349 0.98791 1.01689 0.94121 1.22089 0.97301 0.84539 0.94879 1.21209 0.93390 0.85749 0.97125 0.93828 0.93629 0.93904 0.92257 0.92037 0.89630 0.90322 0.90762 0.90855 0.81355 0.79833 0.82800 0.88504 0.90282 0.89323 0.90217 0.90340 0.88809 0.91083 0.89314 0.95657 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.30 55.49 0.57 -26.46 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 7 C -0.23 -6.24 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.61 -14.95 3.41 -170.61 -0.58 -15.53 16 10 C 0.18 4.24 5.38 -2.80 -0.02 4.23 16 11 C -0.13 -2.30 5.92 -25.69 -0.15 -2.45 16 12 C -0.08 -1.32 0.62 -154.03 -0.10 -1.41 16 13 C -0.12 -1.34 5.97 -25.70 -0.15 -1.49 16 14 C 0.10 1.01 5.00 -2.80 -0.01 1.00 16 15 N -0.60 -8.59 3.34 -172.28 -0.58 -9.17 16 16 C 0.60 9.46 7.82 -12.64 -0.10 9.36 16 17 O -0.54 -10.05 14.74 5.25 0.08 -9.98 16 18 C -0.03 -0.40 6.92 -82.06 -0.57 -0.97 16 19 C -0.20 -2.19 9.43 -38.98 -0.37 -2.55 16 20 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 21 N -0.28 -3.42 11.14 30.59 0.34 -3.08 16 22 N -0.24 -3.21 3.46 -49.91 -0.17 -3.38 16 23 C 0.11 1.26 4.45 -67.12 -0.30 0.96 16 24 C -0.14 -1.34 7.76 -25.83 -0.20 -1.54 16 25 C -0.14 -1.05 8.09 -25.83 -0.21 -1.26 16 26 C -0.14 -1.33 7.80 -25.92 -0.20 -1.53 16 27 C 0.13 2.20 5.89 -3.20 -0.02 2.18 16 28 C 0.15 2.91 6.28 -3.32 -0.02 2.89 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.05 1.23 7.39 -51.93 -0.38 0.85 16 31 H 0.04 1.13 7.49 -51.93 -0.39 0.75 16 32 H 0.06 1.04 8.01 -51.93 -0.42 0.62 16 33 H 0.06 1.00 7.82 -51.93 -0.41 0.59 16 34 H 0.09 0.86 7.78 -51.93 -0.40 0.46 16 35 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 36 H 0.07 0.71 7.00 -51.93 -0.36 0.35 16 37 H 0.07 0.64 6.90 -51.93 -0.36 0.28 16 38 H 0.17 1.39 4.65 -52.49 -0.24 1.15 16 39 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.15 2.08 5.62 -51.92 -0.29 1.78 16 41 H 0.10 0.96 7.77 -51.93 -0.40 0.56 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.92 8.01 -51.93 -0.42 0.50 16 47 H 0.07 1.15 7.85 -51.93 -0.41 0.75 16 48 H 0.09 1.76 7.91 -51.93 -0.41 1.35 16 49 H 0.03 0.48 8.07 -51.93 -0.42 0.06 16 50 H 0.04 0.77 7.80 -51.93 -0.41 0.36 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -32.72 387.31 -10.20 -42.92 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.80 Total: 1.38 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.87 Total: 0.39 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.42 Total: -57.63 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.72 -10.20 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041289281.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.044 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds